Rorug05G0564800

Binds the poly(A) tail of mRNA

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Forward (+)
75607563 .. 75613270
5708 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0564800.1

Sequence Viewer

Length: 1551 bp
ATGGCAATGCAAGGATCTCTGTTTCTAGGCGTAGTGCTTCTACTTGTTGCAGGCTTTAGATTGACAAGCAGTGAACCTCTTACACCCAGTACTCCTATCTATGACACTGGTTTCCTCAACAGGACTAGTTTCCCAGCAGGTTTCATATTTGGGACAGCTTCAGCGTCGTATCAGTATGAAGGTGCTGCTAAAGAAGGTGGTAGAGGACCGAGCATATGGGATACCTACACCCACGAACATCCAGAAAGGATCACGGATGGAAGCAATGGAGATGTGGCTAATGATCAATATCACCACTATAAGGAAGATGTGGGGATTATGAAGAATATGAATTTGGATGCTTATAGGTTCTCTATCTCATGGTCAAGATTGTTACCAAATGGAAAGCTAAGTGGGGGAGTGAACAAGGAAGGAGTCAAGTACTACAACAATCTCATCAATGAGCTCCTAAGCAATGGTCTAAAGCCATTTGTGACCCTCTTTCATTGGGATCTTCCCCAAACTTTAGAAGACGAATATGGCGGTTTCTTAAGCCCTAACGTTGTCAAGCATTTTCGGGACTATGCGGAGCTGTGTTACAAGGAATTTGGTGATCGGGTAAAGCACTGGATCACGTTGAATGAGCCATGGACATACAGTAATGGTGGTTATGCAGTCGGGTCATTGGCACCAGGACGGTGTTCTGCGTGGCAGCAGCTAAATTGCACCGGCGGGGATTCGGGTACTGAACCATATTTGGTGGCACACCACCTACTCCTTTCTCATGCCGCTGCTGTAAAGTTGTACAAGCAGAAATATCAGGCATCTCAAAAAGGAGTTATAGGAGTTACCCTAGTGTCTCACTGGTTCATTCCAATTTCAGGGGCAAAGCACAACAAAAATGCTGCCTTACGATCTTTGGATTTTATGTTTGGATGGTTCATGGACCCTTTGACAAACGGAGACTATCCACACAGCATGCGATCTCTCGTCGGAAACCGATTACCCAAATTCACAAAAGAACAATCCAAGTTACTAATCGGATCATTTGATTTTCTTGGACTAAATTACTATACTACTTACTATGCAACATATACACCTCAGAACAATTCTTTAAATGCAAGCTACTTGACAGACGCTCGTGCTACTCAATCATTTGCGCTAAATGGCGTCCCCATTGGTCCACAGGCTGCTTCATCATGGCTATATGTTTATCCAAAAGGAATTAGAGACCTTTTACTCTACACAAAGACAAAGTATAATGATCCACTTATTTACATTACTGAGAATGGCATTGATGAGTTCAATGATCCCAAATTATCACTTGAGGAAGCCCTCTATGACACTCAGAGAGTTGACTATTACTTCCGCCACCTCTATTACCTTCAAAAAGCAATCAAGGAAGGTGTGAACTTGAAGGGCTACTTTGCATGGTCATTGCTAGACAACTTCGAATGGGCTTCGGGTTACACAGTTCGATTTGGTATCAACTATGTGGATTACAAAAATGGAAACAAAAGGCACCCAAAACTCTCGGCACATTGGTTCAAAAACTTCCTCAAGAAGTATTGA

Protein Analysis

516

Amino Acids

58.58

Weight (kDa)

8.53

Isoelectric Point (pI)

22.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_1 PF00232 42 - 514 6.5e-158 Glycosyl hydrolase family 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 128
AccB1I GGYRCC 2 cut(s) 667, 1500
AciI CCGC 5 cut(s) 522, 566, 711, 768, 1348
AclI AACGTT 1 cut(s) 540
AclWI GGATC 7 cut(s) 22, 257, 498, 617, 1030, 1238, 1283
AcsI RAATTY 3 cut(s) 331, 584, 989
AcuI CTGAAG 1 cut(s) 144
AcyI GRCGYC 1 cut(s) 1149
AfaI GTAC 4 cut(s) 91, 422, 724, 785
AfiI CCNNNNNNNGG 2 cut(s) 301, 860
AflII CTTAAG 1 cut(s) 529
AgsI TTSAA 5 cut(s) 619, 1285, 1367, 1396, 1528
AhlI ACTAGT 1 cut(s) 125
AjnI CCWGG 1 cut(s) 670
AjuI GAANNNNNNNTTGG 2 cut(s) 317, 349
AluBI AGCT 6 cut(s) 158, 388, 445, 571, 697, 1104
AluI AGCT 6 cut(s) 158, 388, 445, 571, 697, 1104
Alw21I GWGCWC 1 cut(s) 447
Alw26I GTCTC 3 cut(s) 843, 936, 1203
AlwI GGATC 7 cut(s) 22, 257, 498, 617, 1030, 1238, 1283
ApeKI GCWGC 6 cut(s) 185, 691, 694, 770, 884, 1169
ApoI RAATTY 3 cut(s) 331, 584, 989
AspLEI GCGC 1 cut(s) 1141
AspS9I GGNCC 3 cut(s) 206, 925, 1160
AsuHPI GGTGA 2 cut(s) 284, 602
AsuII TTCGAA 1 cut(s) 1431
AvaII GGWCC 3 cut(s) 206, 925, 1160
BanI GGYRCC 2 cut(s) 667, 1500
BanII GRGCYC 1 cut(s) 447
BauI CACGAG 1 cut(s) 1119
BbsI GAAGAC 1 cut(s) 516
Bbv12I GWGCWC 1 cut(s) 447
BbvI GCAGC 6 cut(s) 172, 703, 706, 757, 871, 1156
BccI CCATC 2 cut(s) 251, 909
BciT130I CCWGG 1 cut(s) 672
BciVI GTATCC 1 cut(s) 214
BclI TGATCA 1 cut(s) 283
BcoDI GTCTC 3 cut(s) 843, 936, 1203
BcuI ACTAGT 1 cut(s) 125
BfaI CTAG 4 cut(s) 26, 126, 833, 1421
BfrI CTTAAG 1 cut(s) 529
BfuAI ACCTGC 1 cut(s) 128
BfuI GTATCC 1 cut(s) 214
BisI GCNGC 7 cut(s) 186, 692, 695, 768, 771, 885, 1170
BlsI GCNGC 7 cut(s) 187, 693, 696, 769, 772, 886, 1171
BmcAI AGTACT 2 cut(s) 91, 422
Bme1390I CCNGG 1 cut(s) 672
Bme18I GGWCC 3 cut(s) 206, 925, 1160
BmgT120I GGNCC 3 cut(s) 206, 925, 1160
BmiI GGNNCC 3 cut(s) 669, 927, 1502
BmrFI CCNGG 1 cut(s) 672
BmrI ACTGGG 1 cut(s) 81
BmsI GCATC 2 cut(s) 328, 812
BmuI ACTGGG 1 cut(s) 81
BpiI GAAGAC 1 cut(s) 516
Bpu10I CCTNAGC 1 cut(s) 449
Bpu14I TTCGAA 1 cut(s) 1431
BpuEI CTTGAG 2 cut(s) 1325, 1523
BsaBI GATNNNNATC 1 cut(s) 288
BsaHI GRCGYC 1 cut(s) 1149
BsaI GGTCTC 1 cut(s) 1203
BsaJI CCNNGG 1 cut(s) 626
Bsc4I CCNNNNNNNGG 2 cut(s) 301, 860
Bse118I RCCGGY 1 cut(s) 707
Bse1I ACTGG 4 cut(s) 87, 112, 611, 848
Bse3DI GCAATG 4 cut(s) 12, 271, 460, 1415
Bse8I GATNNNNATC 1 cut(s) 288
BseBI CCWGG 1 cut(s) 672
BseDI CCNNGG 1 cut(s) 626
BseGI GGATG 4 cut(s) 238, 262, 343, 920
BseJI GATNNNNATC 1 cut(s) 288
BseLI CCNNNNNNNGG 2 cut(s) 301, 860
BseMI GCAATG 4 cut(s) 12, 271, 460, 1415
BseMII CTCAG 3 cut(s) 1094, 1254, 1340
BseNI ACTGG 4 cut(s) 87, 112, 611, 848
BseXI GCAGC 6 cut(s) 172, 703, 706, 757, 871, 1156
BseYI CCCAGC 1 cut(s) 133
BshNI GGYRCC 2 cut(s) 667, 1500
BsiHKAI GWGCWC 1 cut(s) 447
BsiSI CCGG 1 cut(s) 708
BslFI GGGAC 3 cut(s) 166, 572, 1136
BslI CCNNNNNNNGG 2 cut(s) 301, 860
BsmAI GTCTC 3 cut(s) 843, 936, 1203
BsmFI GGGAC 3 cut(s) 166, 572, 1136
Bso31I GGTCTC 1 cut(s) 1203
Bsp119I TTCGAA 1 cut(s) 1431
Bsp1286I GDGCHC 1 cut(s) 447
Bsp1407I TGTACA 1 cut(s) 783
Bsp19I CCATGG 1 cut(s) 626
BspACI CCGC 5 cut(s) 522, 566, 711, 768, 1348
BspCNI CTCAG 3 cut(s) 1093, 1255, 1339
BspLI GGNNCC 3 cut(s) 669, 927, 1502
BspMI ACCTGC 1 cut(s) 128
BspPI GGATC 7 cut(s) 22, 257, 498, 617, 1030, 1238, 1283
BspT104I TTCGAA 1 cut(s) 1431
BspT107I GGYRCC 2 cut(s) 667, 1500
BspTI CTTAAG 1 cut(s) 529
BspTNI GGTCTC 1 cut(s) 1203
BsrDI GCAATG 4 cut(s) 12, 271, 460, 1415
BsrFI RCCGGY 1 cut(s) 707
BsrGI TGTACA 1 cut(s) 783
BsrI ACTGG 4 cut(s) 87, 112, 611, 848
BssAI RCCGGY 1 cut(s) 707
BssECI CCNNGG 1 cut(s) 626
BssNI GRCGYC 1 cut(s) 1149
BssSI CACGAG 1 cut(s) 1119
BssT1I CCWWGG 1 cut(s) 626
Bst2BI CACGAG 1 cut(s) 1119
Bst2UI CCWGG 1 cut(s) 672
Bst4CI ACNGT 3 cut(s) 638, 678, 1453
BstACI GRCGYC 1 cut(s) 1149
BstAFI CTTAAG 1 cut(s) 529
BstAUI TGTACA 1 cut(s) 783
BstBI TTCGAA 1 cut(s) 1431
BstC8I GCNNGC 3 cut(s) 52, 959, 1102
BstDEI CTNAG 5 cut(s) 389, 449, 1080, 1263, 1326
BstDSI CCRYGG 1 cut(s) 626
BstF5I GGATG 4 cut(s) 238, 262, 343, 920
BstHHI GCGC 1 cut(s) 1141
BstMAI GTCTC 3 cut(s) 843, 936, 1203
BstNI CCWGG 1 cut(s) 672
BstNSI RCATGY 1 cut(s) 961
BstSCI CCNGG 1 cut(s) 670
BstV1I GCAGC 6 cut(s) 172, 703, 706, 757, 871, 1156
BstV2I GAAGAC 1 cut(s) 516
BstX2I RGATCY 2 cut(s) 14, 490
BstYI RGATCY 2 cut(s) 14, 490
BsuI GTATCC 1 cut(s) 214
BtgI CCRYGG 1 cut(s) 626
BtsCI GGATG 4 cut(s) 238, 262, 343, 920
BtsI GCAGTG 1 cut(s) 76
BtsIMutI CAGTG 4 cut(s) 76, 105, 604, 841
BveI ACCTGC 1 cut(s) 128
Cac8I GCNNGC 3 cut(s) 52, 959, 1102
CfoI GCGC 1 cut(s) 1141
Cfr10I RCCGGY 1 cut(s) 707
Cfr13I GGNCC 3 cut(s) 206, 925, 1160
CseI GACGC 3 cut(s) 153, 1124, 1138
Csp6I GTAC 4 cut(s) 90, 421, 723, 784
CviAII CATG 7 cut(s) 360, 627, 764, 922, 958, 1179, 1410
CviQI GTAC 4 cut(s) 90, 421, 723, 784
DdeI CTNAG 5 cut(s) 389, 449, 1080, 1263, 1326
DraI TTTAAA 1 cut(s) 1095
EciI GGCGGA 1 cut(s) 1337
Ecl136II GAGCTC 1 cut(s) 445
Eco130I CCWWGG 1 cut(s) 626
Eco24I GRGCYC 1 cut(s) 447
Eco31I GGTCTC 1 cut(s) 1203
Eco47I GGWCC 3 cut(s) 206, 925, 1160
Eco53kI GAGCTC 1 cut(s) 445
Eco57I CTGAAG 1 cut(s) 144
EcoICRI GAGCTC 1 cut(s) 445
EcoRII CCWGG 1 cut(s) 670
EcoT14I CCWWGG 1 cut(s) 626
EcoT38I GRGCYC 1 cut(s) 447
ErhI CCWWGG 1 cut(s) 626
FaeI CATG 7 cut(s) 363, 630, 767, 925, 961, 1182, 1413
FalI AAGNNNNNCTT 2 cut(s) 1388, 1420
FaqI GGGAC 3 cut(s) 166, 572, 1136
FatI CATG 7 cut(s) 359, 626, 763, 921, 957, 1178, 1409
FauI CCCGC 1 cut(s) 704
FauNDI CATATG 1 cut(s) 215
FbaI TGATCA 1 cut(s) 283
Fnu4HI GCNGC 7 cut(s) 186, 692, 695, 768, 771, 885, 1170
FokI GGATG 4 cut(s) 225, 269, 350, 927
FriOI GRGCYC 1 cut(s) 447
Fsp4HI GCNGC 7 cut(s) 186, 692, 695, 768, 771, 885, 1170
FspBI CTAG 4 cut(s) 26, 126, 833, 1421
GlaI GCGC 1 cut(s) 1140
GluI GCNGC 7 cut(s) 186, 692, 695, 768, 771, 885, 1170
GsaI CCCAGC 1 cut(s) 137
HapII CCGG 1 cut(s) 708
HgaI GACGC 3 cut(s) 153, 1124, 1138
HhaI GCGC 1 cut(s) 1141
Hin1I GRCGYC 1 cut(s) 1149
Hin1II CATG 7 cut(s) 363, 630, 767, 925, 961, 1182, 1413
Hin6I GCGC 1 cut(s) 1139
HinP1I GCGC 1 cut(s) 1139
HincII GTYRAC 1 cut(s) 1336
HindII GTYRAC 1 cut(s) 1336
HinfI GANTC 2 cut(s) 414, 716
HpaII CCGG 1 cut(s) 708
HphI GGTGA 2 cut(s) 284, 602
Hpy166II GTNNAC 5 cut(s) 74, 403, 1163, 1336, 1390
Hpy188I TCNGA 4 cut(s) 974, 1022, 1083, 1329
Hpy188III TCNNGA 4 cut(s) 242, 366, 557, 1540
Hpy8I GTNNAC 5 cut(s) 74, 403, 1163, 1336, 1390
Hpy99I CGWCG 2 cut(s) 169, 974
HpyAV CCTTC 6 cut(s) 173, 188, 404, 1373, 1376, 1390
HpyCH4III ACNGT 3 cut(s) 638, 678, 1453
HpyCH4IV ACGT 2 cut(s) 540, 614
HpyCH4V TGCA 7 cut(s) 10, 50, 653, 705, 1067, 1100, 1409
HpyF3I CTNAG 5 cut(s) 389, 449, 1080, 1263, 1326
HpySE526I ACGT 2 cut(s) 540, 614
Hsp92I GRCGYC 1 cut(s) 1149
Hsp92II CATG 7 cut(s) 363, 630, 767, 925, 961, 1182, 1413
HspAI GCGC 1 cut(s) 1139
Ksp22I TGATCA 1 cut(s) 283
LmnI GCTCC 2 cut(s) 450, 568
Lsp1109I GCAGC 6 cut(s) 172, 703, 706, 757, 871, 1156
LweI GCATC 2 cut(s) 328, 812
MaeI CTAG 4 cut(s) 26, 126, 833, 1421
MaeII ACGT 2 cut(s) 540, 614
MaeIII GTNAC 6 cut(s) 372, 472, 575, 826, 1011, 1445
MboII GAAGA 4 cut(s) 317, 334, 485, 521
MflI RGATCY 2 cut(s) 14, 490
MhlI GDGCHC 1 cut(s) 447
MluCI AATT 9 cut(s) 331, 584, 700, 855, 989, 1045, 1087, 1203, 1295
MlyI GAGTC 1 cut(s) 423
MmeI TCCRAC 1 cut(s) 952
MnlI CCTC 9 cut(s) 87, 125, 197, 488, 1089, 1300, 1325, 1364, 1547
MseI TTAA 2 cut(s) 530, 1094
MspA1I CMGCKG 1 cut(s) 770
MspCI CTTAAG 1 cut(s) 529
MspI CCGG 1 cut(s) 708
MspR9I CCNGG 1 cut(s) 672
MvaI CCWGG 1 cut(s) 672
NcoI CCATGG 1 cut(s) 626
NdeI CATATG 1 cut(s) 215
NlaIII CATG 7 cut(s) 363, 630, 767, 925, 961, 1182, 1413
NlaIV GGNNCC 3 cut(s) 669, 927, 1502
NmeAIII GCCGAG 1 cut(s) 1493
NmuCI GTSAC 1 cut(s) 472
NspI RCATGY 1 cut(s) 961
NspV TTCGAA 1 cut(s) 1431
PaeI GCATGC 1 cut(s) 961
PfeI GAWTC 1 cut(s) 716
PkrI GCNGC 7 cut(s) 187, 693, 696, 769, 772, 886, 1171
PleI GAGTC 1 cut(s) 422
PpsI GAGTC 1 cut(s) 422
Psp124BI GAGCTC 1 cut(s) 447
Psp1406I AACGTT 1 cut(s) 540
Psp6I CCWGG 1 cut(s) 670
PspFI CCCAGC 1 cut(s) 133
PspGI CCWGG 1 cut(s) 670
PspN4I GGNNCC 3 cut(s) 669, 927, 1502
PspPI GGNCC 3 cut(s) 206, 925, 1160
PsuI RGATCY 2 cut(s) 14, 490
RsaI GTAC 4 cut(s) 91, 422, 724, 785
RsaNI GTAC 4 cut(s) 90, 421, 723, 784
SacI GAGCTC 1 cut(s) 447
SaqAI TTAA 2 cut(s) 530, 1094
SatI GCNGC 7 cut(s) 186, 692, 695, 768, 771, 885, 1170
Sau96I GGNCC 3 cut(s) 206, 925, 1160
ScaI AGTACT 2 cut(s) 91, 422
SchI GAGTC 1 cut(s) 423
ScrFI CCNGG 1 cut(s) 672
SduI GDGCHC 1 cut(s) 447
SfaNI GCATC 2 cut(s) 328, 812
SfuI TTCGAA 1 cut(s) 1431
SgrAI CRCCGGYG 1 cut(s) 707
SinI GGWCC 3 cut(s) 206, 925, 1160
SmlI CTYRAG 3 cut(s) 529, 1304, 1538
SmoI CTYRAG 3 cut(s) 529, 1304, 1538
SpeI ACTAGT 1 cut(s) 125
SphI GCATGC 1 cut(s) 961
Sse9I AATT 9 cut(s) 331, 584, 700, 855, 989, 1045, 1087, 1203, 1295
SsiI CCGC 5 cut(s) 522, 566, 711, 768, 1348
SspMI CTAG 4 cut(s) 26, 126, 833, 1421
SstI GAGCTC 1 cut(s) 447
StyD4I CCNGG 1 cut(s) 670
StyI CCWWGG 1 cut(s) 626
TaaI ACNGT 3 cut(s) 638, 678, 1453
TaiI ACGT 2 cut(s) 543, 617
TaqI TCGA 2 cut(s) 1431, 1456
TaqII GACCGA 1 cut(s) 223
TasI AATT 9 cut(s) 331, 584, 700, 855, 989, 1045, 1087, 1203, 1295
TatI WGTACW 3 cut(s) 89, 420, 783
TauI GCSGC 1 cut(s) 770
TfiI GAWTC 1 cut(s) 716
Tru1I TTAA 2 cut(s) 530, 1094
Tru9I TTAA 2 cut(s) 530, 1094
TscAI CASTG 4 cut(s) 76, 112, 611, 848
TseFI GTSAC 1 cut(s) 472
TseI GCWGC 6 cut(s) 185, 691, 694, 770, 884, 1169
Tsp45I GTSAC 1 cut(s) 472
TspDTI ATGAA 8 cut(s) 133, 192, 335, 344, 473, 838, 910, 1164
TspGWI ACGGA 2 cut(s) 269, 954
TspRI CASTG 4 cut(s) 76, 112, 611, 848
Vha464I CTTAAG 1 cut(s) 529
VpaK11BI GGWCC 3 cut(s) 206, 925, 1160
XapI RAATTY 3 cut(s) 331, 584, 989
XceI RCATGY 1 cut(s) 961
XspI CTAG 4 cut(s) 26, 126, 833, 1421
ZrmI AGTACT 2 cut(s) 91, 422
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.