Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0002657

Physical Location & Seq

Genomic Coordinates Reverse (-)

17747945 .. 17753389

Gene Structure 5445 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1085100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1977 bp

ATGGCGCAAGTTCAGCAGGTCCCGGCTCAGAATGCGAACGCGGCAGCAGCGGCGGCTGCGGCGAACGGTGGCGGAGGAGCCAACCAGTTCGTGACGACGTCGCTTTACGTTGGCGATCTTGACCCCAACGTCACCGATTCGCAGCTCTACGACCTGTTCTACCAGCTGGGTCAGGTGGTTTCGGTTAGGGTTTGCAGGGACTTGTCCACCCGGAGGTCGCTTGGCTATGGCTATGTGAATTTCGCCAACCCACAAGATGCTGCTAGGGCTTTGGATGTGTTGAACTTTTCTCCTGTGAATGGAAGGCCCATTAGGATTATGTACTCTCATCGTGATCCTAGTATTCGCAAAAGTGGGTCTGGCAACATATTTATTAAGAATTTGGACAAAGCTATTGATCACAAAGCCTTGCATGATACATTTTCTGCATTTGGAAACATCCTTTCTTGCAAGGTGGCTACAGACTCCGTTGGCCAGTCAAAAGGCTATGGCTTTGTACAATTTGACAATGAAGAAGCTGCCCAAAAGGCTATAGAGAAGTTGAATGGTATGCTTTTAAACGATAAGCAAGTTTTTGTTGGTCCTTTCCTCCGGAAGCAGGAAAGGGACAGTACTGCTGACAAGTCAAGATTCAACAATGTTTATGTAAAGAATCTATCAGAGTCAACTACTGAGGAAGATTTGAAAAAAGTTTTTTCTGAATTTGGGATAACCACTAGTGAAGTTGTGATGAGGGATGGAGATGGAAAATCGAAGTGCTTTGGGTTTGTCAATTTTGAAAGGGCTGAAGATGCTGCTAGAGCTGTTGAGGCTCTGAATGGAAAGAAATTTGATGATAAGGAGTGGTATGTTGGGAAGGCCCAGAAGAAATCTGAAAGGGAAAATGAATTGAAACAACGATTTGAACAGAGTATGAAAGAGGCAGCAGACAAGTATCAAGGCGCGAACTTGTATGTTAAAAATTTGGATGATACTATAGCTGATGATAAACTTCAGGAGCTATTCTCTCCATTTGGGACTATTACCTCATGCAAGGTCATGCGAGACCCTAGTGGAGTTAGTAGGGGATCAGGTTTTGTTGCATTCTCAACTCCTGAAGAGGCAAATAGAGCTCTATTGGAGATGAATGGAAAGATGATTGTAAGCAAACCTCTGTATGTTGCACTTGCACAACGAAAAGAAGATAGAAGAGCAAGGCTACAGGCTCAGTTTTCTCAAATGCGGCCAGTTGCAATGGCACCTCCAGTTGCTTCTCGTATGCCAATGTACCCTCCTGGTGGTCCAGGTCTTGGACAACAAATATTCTATGGTCAAGGCCCACCTGCTATCATTCCCTCCCAGCCTGGATTTGGGTATCAGCAGCAGCTTGTTCCTGGTATGAGGCCTGGTGGGGCTCCAATGCCAAATTTCTTTGTGCCAATGGTTCAGCAGGGGCAGCAAGGGCAGCGTCCTGGTGGCAGACGTGGAGGTTCTGTCCAGCAAAACCAGCAACCAGTTCCCATGATGCAACAGCAGATGCTACCAAGGGGGCGTGTCTACCGCTACCCATCTGGTCGAGGTATACCTGATGGTCCCATGCCTGGTGTTGCTGGAGGCATGTTTTCTGTTCCATATGACATCAGCGGCGGTGGTGGCATGCCTATCCGTGATGCAGCACTGTCTCAGCCAACAATTCCAATAGGGGCTTTGGCTACTGCTCTTGCAAATGCCACACCAGAGCAGCAAAGAACGATGCTGGGTGAGAATCTTTACCCACTCGTGGAACAGCTGGAACCTGACAATGCAGCAAAGGTTACCGGCATGCTTCTGGAGATGGATCAGACTGAAGTTCTTCATTTGCTCGAGTCGCCTGAAGCTTTGAAGGCAAAGGTAGCTGAGGCTATGGATGTTCTGAGGAACGTTGCTCAGCAACAGCAAGCTGGCAATGCAGCTGATCAACTTGGCTCATTGTCACTCAATGAAAACCTTGTTTCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003743 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006412 GO:0006413 GO:0006417 GO:0006446 GO:0006518 GO:0006807 GO:0006950 GO:0006970 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009628 GO:0009651 GO:0009889 GO:0009894 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010608 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031326 GO:0031329 GO:0032268 GO:0034248 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051246 GO:0051252 GO:0060211 GO:0060255 GO:0061013 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:1900151 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1903311 GO:2000112

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 ko03018 map03013 map03015 map03018

Pfam Domains

Protein Families

PABP RRM_1

Protein Analysis

659

Amino Acids

71.62

Weight (kDa)

8.1

Isoelectric Point (pI)

42.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	35 - 105	8.2e-20	RNA recognition motif
RRM_1	PF00076	123 - 190	4.6e-21	RNA recognition motif
RRM_1	PF00076	214 - 282	3.2e-22	RNA recognition motif
RRM_1	PF00076	317 - 385	7.2e-19	RNA recognition motif
MLLE	PF00658	566 - 631	4.5e-30	MLLE domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0002657)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49760 AT1G49760 AT4G34110
fragaria_vesca	FvH4_2g05720 FvH4_2g05720 FvH4_2g05720 FvH4_2g05720 FvH4_2g34040 FvH4_2g34040 FvH4_2g34040 FvH4_6g37220
malus_domestica	MD00G1138300.v1.1 MD05G1085100.v1.1 MD08G1096400.v1.1 MD15G1079100.v1.1
prunus_persica	Prupe.1G432200_v2.0.a1 Prupe.1G432200_v2.0.a1 Prupe.8G129400_v2.0.a1 Prupe.8G129400_v2.0.a1
pyrus_communis	pycom05g08430 pycom08g07840 pycom10g07970 pycom15g07370
rosa_chinensis	RchiOBHm_Chr6g0256591 RchiOBHm_Chr6g0308331
rosa_laevigata	RLG00000010649 RLG00000014752
rosa_multiflora	Rmu_sc0003012.1_g000007
rosa_roxburghii	Rroxscaffold_7G00160250 Rroxscaffold_7G00209190
rosa_rugosa	Rorug05G0564800 Rorug06G0366200 Rorug06G0366200
rosa_samantha	Rh6AG082800 Rh6AG475400 Rh6BG077400 Rh6CG072000 Rh6DG477300
rosa_wichuraiana	Rw6G007450 Rw6G041440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1330
AasI	GACNNNNNNGTC	1 cut(s)	128
AatII	GACGTC	1 cut(s)	101
Acc36I	ACCTGC	2 cut(s)	7, 1330
AccB1I	GGYRCC	1 cut(s)	1237
AccB7I	CCANNNNNTGG	1 cut(s)	1289
AccI	GTMKAC	2 cut(s)	1536, 1561
AccII	CGCG	2 cut(s)	41, 944
AccIII	TCCGGA	1 cut(s)	591
AciI	CCGC	9 cut(s)	41, 50, 53, 59, 72, 1222, 1540, 1623, 1626
AclI	AACGTT	1 cut(s)	1899
AclWI	GGATC	3 cut(s)	329, 1075, 1824
AcoI	YGGCCR	2 cut(s)	472, 1223
AcsI	RAATTY	6 cut(s)	238, 379, 701, 827, 961, 1405
AcuI	CTGAAG	5 cut(s)	807, 977, 1116, 1845, 1872
AcyI	GRCGYC	1 cut(s)	98
AfaI	GTAC	4 cut(s)	323, 498, 613, 1268
AfiI	CCNNNNNNNGG	8 cut(s)	213, 299, 598, 1277, 1289, 1349, 1580, 1759
AgsI	TTSAA	8 cut(s)	283, 544, 634, 685, 779, 892, 905, 1861
AhlI	ACTAGT	1 cut(s)	716
AjiI	CACGTC	1 cut(s)	1463
AjnI	CCWGG	7 cut(s)	1273, 1282, 1342, 1372, 1384, 1450, 1579
Alw21I	GWGCWC	1 cut(s)	1114
Alw26I	GTCTC	2 cut(s)	1038, 1665
AlwI	GGATC	3 cut(s)	329, 1075, 1824
Ama87I	CYCGRG	1 cut(s)	1841
Aor13HI	TCCGGA	1 cut(s)	591
AoxI	GGCC	6 cut(s)	305, 472, 858, 1223, 1315, 1382
ApoI	RAATTY	6 cut(s)	238, 379, 701, 827, 961, 1405
Asp700I	GAANNNNTTC	1 cut(s)	1830
AspLEI	GCGC	2 cut(s)	7, 944
AspS9I	GGNCC	7 cut(s)	19, 306, 581, 859, 1280, 1316, 1571
AsuC2I	CCSGG	2 cut(s)	23, 211
AsuHPI	GGTGA	2 cut(s)	124, 1751
AvaI	CYCGRG	1 cut(s)	1841
AvaII	GGWCC	4 cut(s)	19, 581, 1280, 1571
BalI	TGGCCA	1 cut(s)	474
BanI	GGYRCC	1 cut(s)	1237
BanII	GRGCYC	2 cut(s)	1114, 1396
BauI	CACGAG	1 cut(s)	1757
Bbv12I	GWGCWC	1 cut(s)	1114
BbvCI	CCTCAGC	1 cut(s)	1875
BccI	CCATC	5 cut(s)	731, 737, 1555, 1562, 1807
BciT130I	CCWGG	7 cut(s)	1275, 1284, 1344, 1374, 1386, 1452, 1581
BclI	TGATCA	2 cut(s)	397, 1933
BcnI	CCSGG	2 cut(s)	23, 211
BcoDI	GTCTC	2 cut(s)	1038, 1665
BcuI	ACTAGT	1 cut(s)	716
BfaI	CTAG	5 cut(s)	264, 339, 717, 798, 1050
BfmI	CTRYAG	4 cut(s)	459, 531, 975, 1199
BfuAI	ACCTGC	2 cut(s)	7, 1330
BglI	GCCNNNNNGGC	1 cut(s)	527
BlpI	GCTNAGC	1 cut(s)	1905
BmcAI	AGTACT	1 cut(s)	613
Bme1390I	CCNGG	9 cut(s)	23, 211, 1275, 1284, 1344, 1374, 1386, 1452, 1581
Bme18I	GGWCC	4 cut(s)	19, 581, 1280, 1571
BmeT110I	CYCGRG	1 cut(s)	1841
BmgBI	CACGTC	1 cut(s)	1463
BmgT120I	GGNCC	7 cut(s)	19, 306, 581, 859, 1280, 1316, 1571
BmiI	GGNNCC	6 cut(s)	21, 79, 1239, 1395, 1573, 1773
BmrFI	CCNGG	9 cut(s)	23, 211, 1275, 1284, 1344, 1374, 1386, 1452, 1581
BmsI	GCATC	6 cut(s)	247, 781, 1494, 1506, 1639, 1722
BplI	GAGNNNNNCTC	2 cut(s)	989, 1021
BpmI	CTGGAG	3 cut(s)	1227, 1611, 1829
Bpu10I	CCTNAGC	1 cut(s)	1875
Bpu1102I	GCTNAGC	1 cut(s)	1905
BpuMI	CCSGG	2 cut(s)	23, 211
BsaHI	GRCGYC	1 cut(s)	98
BsaI	GGTCTC	1 cut(s)	1038
BsaJI	CCNNGG	1 cut(s)	1523
BsaWI	WCCGGW	1 cut(s)	591
BsaXI	ACNNNNNCTCC	2 cut(s)	1458, 1488
Bsc4I	CCNNNNNNNGG	8 cut(s)	213, 299, 598, 1277, 1289, 1349, 1580, 1759
Bse118I	RCCGGY	1 cut(s)	1796
Bse1I	ACTGG	5 cut(s)	85, 475, 1226, 1244, 1493
Bse3DI	GCAATG	2 cut(s)	1239, 1930
BseAI	TCCGGA	1 cut(s)	591
BseBI	CCWGG	7 cut(s)	1275, 1284, 1344, 1374, 1386, 1452, 1581
BseDI	CCNNGG	1 cut(s)	1523
BseGI	GGATG	5 cut(s)	280, 438, 742, 973, 1891
BseLI	CCNNNNNNNGG	8 cut(s)	213, 299, 598, 1277, 1289, 1349, 1580, 1759
BseMI	GCAATG	2 cut(s)	1239, 1930
BseMII	CTCAG	7 cut(s)	41, 663, 1220, 1676, 1866, 1883, 1919
BseNI	ACTGG	5 cut(s)	85, 475, 1226, 1244, 1493
BseRI	GAGGAG	1 cut(s)	90
BseYI	CCCAGC	3 cut(s)	166, 1338, 1735
Bsh1236I	CGCG	2 cut(s)	41, 944
BshFI	GGCC	6 cut(s)	307, 474, 860, 1225, 1317, 1384
BshNI	GGYRCC	1 cut(s)	1237
BsiHKAI	GWGCWC	1 cut(s)	1114
BsiHKCI	CYCGRG	1 cut(s)	1841
BsiSI	CCGG	4 cut(s)	23, 211, 592, 1797
BslFI	GGGAC	5 cut(s)	5, 212, 620, 1030, 1557
BslI	CCNNNNNNNGG	8 cut(s)	213, 299, 598, 1277, 1289, 1349, 1580, 1759
BsmAI	GTCTC	2 cut(s)	1038, 1665
BsmFI	GGGAC	5 cut(s)	5, 212, 620, 1030, 1557
BsmI	GAATGC	2 cut(s)	37, 1082
BsnI	GGCC	6 cut(s)	307, 474, 860, 1225, 1317, 1384
Bso31I	GGTCTC	1 cut(s)	1038
BsoBI	CYCGRG	1 cut(s)	1841
Bsp1286I	GDGCHC	2 cut(s)	1114, 1396
Bsp13I	TCCGGA	1 cut(s)	591
Bsp1407I	TGTACA	1 cut(s)	496
Bsp143I	GATC	6 cut(s)	115, 334, 397, 1067, 1816, 1933
Bsp1720I	GCTNAGC	1 cut(s)	1905
BspACI	CCGC	9 cut(s)	41, 50, 53, 59, 72, 1222, 1540, 1623, 1626
BspANI	GGCC	6 cut(s)	307, 474, 860, 1225, 1317, 1384
BspCNI	CTCAG	7 cut(s)	40, 664, 1219, 1675, 1867, 1884, 1918
BspEI	TCCGGA	1 cut(s)	591
BspFNI	CGCG	2 cut(s)	41, 944
BspLI	GGNNCC	6 cut(s)	21, 79, 1239, 1395, 1573, 1773
BspMI	ACCTGC	2 cut(s)	7, 1330
BspPI	GGATC	3 cut(s)	329, 1075, 1824
BspQI	GCTCTTC	1 cut(s)	1183
BspT107I	GGYRCC	1 cut(s)	1237
BspTNI	GGTCTC	1 cut(s)	1038
BsrDI	GCAATG	2 cut(s)	1239, 1930
BsrFI	RCCGGY	1 cut(s)	1796
BsrGI	TGTACA	1 cut(s)	496
BsrI	ACTGG	5 cut(s)	85, 475, 1226, 1244, 1493
BssAI	RCCGGY	1 cut(s)	1796
BssECI	CCNNGG	1 cut(s)	1523
BssMI	GATC	6 cut(s)	115, 334, 397, 1067, 1816, 1933
BssNAI	GTATAC	1 cut(s)	1562
BssNI	GRCGYC	1 cut(s)	98
BssSI	CACGAG	1 cut(s)	1757
BssT1I	CCWWGG	1 cut(s)	1523
Bst1107I	GTATAC	1 cut(s)	1562
Bst2BI	CACGAG	1 cut(s)	1757
Bst2UI	CCWGG	7 cut(s)	1275, 1284, 1344, 1374, 1386, 1452, 1581
Bst4CI	ACNGT	3 cut(s)	68, 611, 1659
Bst6I	CTCTTC	2 cut(s)	1092, 1183
BstACI	GRCGYC	1 cut(s)	98
BstAUI	TGTACA	1 cut(s)	496
BstC8I	GCNNGC	4 cut(s)	1637, 1802, 1917, 1921
BstDEI	CTNAG	7 cut(s)	27, 672, 1206, 1662, 1875, 1892, 1905
BstEII	GGTNACC	1 cut(s)	1792
BstF5I	GGATG	5 cut(s)	280, 438, 742, 973, 1891
BstFNI	CGCG	2 cut(s)	41, 944
BstHHI	GCGC	2 cut(s)	7, 944
BstKTI	GATC	6 cut(s)	118, 337, 400, 1070, 1819, 1936
BstMAI	GTCTC	2 cut(s)	1038, 1665
BstMBI	GATC	6 cut(s)	115, 334, 397, 1067, 1816, 1933
BstNI	CCWGG	7 cut(s)	1275, 1284, 1344, 1374, 1386, 1452, 1581
BstNSI	RCATGY	3 cut(s)	1600, 1639, 1804
BstPI	GGTNACC	1 cut(s)	1792
BstSCI	CCNGG	9 cut(s)	21, 209, 1273, 1282, 1342, 1372, 1384, 1450, 1579
BstSFI	CTRYAG	4 cut(s)	459, 531, 975, 1199
BstUI	CGCG	2 cut(s)	41, 944
BstZ17I	GTATAC	1 cut(s)	1562
BsuRI	GGCC	6 cut(s)	307, 474, 860, 1225, 1317, 1384
BtrI	CACGTC	1 cut(s)	1463
BtsCI	GGATG	5 cut(s)	280, 438, 742, 973, 1891
BtsIMutI	CAGTG	1 cut(s)	1655
BveI	ACCTGC	2 cut(s)	7, 1330
Cac8I	GCNNGC	4 cut(s)	1637, 1802, 1917, 1921
CfoI	GCGC	2 cut(s)	7, 944
Cfr10I	RCCGGY	1 cut(s)	1796
Cfr13I	GGNCC	7 cut(s)	19, 306, 581, 859, 1280, 1316, 1571
CseI	GACGC	1 cut(s)	1436
Csp6I	GTAC	4 cut(s)	322, 497, 612, 1267
CviAII	CATG	8 cut(s)	413, 1029, 1039, 1501, 1576, 1597, 1636, 1801
CviQI	GTAC	4 cut(s)	322, 497, 612, 1267
DdeI	CTNAG	7 cut(s)	27, 672, 1206, 1662, 1875, 1892, 1905
DpnI	GATC	6 cut(s)	117, 336, 399, 1069, 1818, 1935
DpnII	GATC	6 cut(s)	115, 334, 397, 1067, 1816, 1933
DraI	TTTAAA	1 cut(s)	558
DrdI	GACNNNNNNGTC	1 cut(s)	128
DseDI	GACNNNNNNGTC	1 cut(s)	128
EaeI	YGGCCR	2 cut(s)	472, 1223
Eam1104I	CTCTTC	2 cut(s)	1092, 1183
EarI	CTCTTC	2 cut(s)	1092, 1183
EciI	GGCGGA	1 cut(s)	87
Ecl136II	GAGCTC	1 cut(s)	1112
Eco130I	CCWWGG	1 cut(s)	1523
Eco147I	AGGCCT	1 cut(s)	1384
Eco24I	GRGCYC	2 cut(s)	1114, 1396
Eco31I	GGTCTC	1 cut(s)	1038
Eco47I	GGWCC	4 cut(s)	19, 581, 1280, 1571
Eco53kI	GAGCTC	1 cut(s)	1112
Eco57I	CTGAAG	5 cut(s)	807, 977, 1116, 1845, 1872
Eco88I	CYCGRG	1 cut(s)	1841
Eco91I	GGTNACC	1 cut(s)	1792
EcoICRI	GAGCTC	1 cut(s)	1112
EcoO109I	RGGNCCY	1 cut(s)	19
EcoO65I	GGTNACC	1 cut(s)	1792
EcoRII	CCWGG	7 cut(s)	1273, 1282, 1342, 1372, 1384, 1450, 1579
EcoT14I	CCWWGG	1 cut(s)	1523
EcoT38I	GRGCYC	2 cut(s)	1114, 1396
ErhI	CCWWGG	1 cut(s)	1523
FaeI	CATG	8 cut(s)	416, 1032, 1042, 1504, 1579, 1600, 1639, 1804
FaqI	GGGAC	5 cut(s)	5, 212, 620, 1030, 1557
FatI	CATG	8 cut(s)	412, 1028, 1038, 1500, 1575, 1596, 1635, 1800
FauNDI	CATATG	1 cut(s)	1612
FbaI	TGATCA	2 cut(s)	397, 1933
FblI	GTMKAC	2 cut(s)	1536, 1561
FokI	GGATG	5 cut(s)	287, 425, 749, 980, 1898
FriOI	GRGCYC	2 cut(s)	1114, 1396
FspBI	CTAG	5 cut(s)	264, 339, 717, 798, 1050
GlaI	GCGC	2 cut(s)	6, 943
GsaI	CCCAGC	3 cut(s)	170, 1342, 1739
GsuI	CTGGAG	3 cut(s)	1227, 1611, 1829
HaeIII	GGCC	6 cut(s)	307, 474, 860, 1225, 1317, 1384
HapII	CCGG	4 cut(s)	23, 211, 592, 1797
HgaI	GACGC	1 cut(s)	1436
HhaI	GCGC	2 cut(s)	7, 944
Hin1I	GRCGYC	1 cut(s)	98
Hin1II	CATG	8 cut(s)	416, 1032, 1042, 1504, 1579, 1600, 1639, 1804
Hin6I	GCGC	2 cut(s)	5, 942
HinP1I	GCGC	2 cut(s)	5, 942
HincII	GTYRAC	1 cut(s)	666
HindII	GTYRAC	1 cut(s)	666
HindIII	AAGCTT	1 cut(s)	1854
HinfI	GANTC	7 cut(s)	137, 464, 630, 652, 662, 1744, 1844
HpaII	CCGG	4 cut(s)	23, 211, 592, 1797
HphI	GGTGA	2 cut(s)	124, 1751
Hpy166II	GTNNAC	4 cut(s)	207, 666, 1537, 1562
Hpy188I	TCNGA	7 cut(s)	30, 661, 700, 816, 874, 1821, 1893
Hpy188III	TCNNGA	9 cut(s)	91, 119, 332, 592, 627, 995, 1094, 1808, 1974
Hpy8I	GTNNAC	4 cut(s)	207, 666, 1537, 1562
Hpy99I	CGWCG	2 cut(s)	100, 103
HpyAV	CCTTC	3 cut(s)	297, 850, 1855
HpyCH4III	ACNGT	3 cut(s)	68, 611, 1659
HpyCH4IV	ACGT	5 cut(s)	98, 108, 129, 1462, 1899
HpyF3I	CTNAG	7 cut(s)	27, 672, 1206, 1662, 1875, 1892, 1905
HpySE526I	ACGT	5 cut(s)	98, 108, 129, 1462, 1899
Hsp92I	GRCGYC	1 cut(s)	98
Hsp92II	CATG	8 cut(s)	416, 1032, 1042, 1504, 1579, 1600, 1639, 1804
HspAI	GCGC	2 cut(s)	5, 942
Kpn2I	TCCGGA	1 cut(s)	591
Ksp22I	TGATCA	2 cut(s)	397, 1933
Kzo9I	GATC	6 cut(s)	115, 334, 397, 1067, 1816, 1933
LguI	GCTCTTC	1 cut(s)	1183
LmnI	GCTCC	3 cut(s)	77, 997, 1399
LweI	GCATC	6 cut(s)	247, 781, 1494, 1506, 1639, 1722
MaeI	CTAG	5 cut(s)	264, 339, 717, 798, 1050
MaeII	ACGT	5 cut(s)	98, 108, 129, 1462, 1899
MaeIII	GTNAC	4 cut(s)	91, 130, 1792, 1950
MalI	GATC	6 cut(s)	117, 336, 399, 1069, 1818, 1935
MboI	GATC	6 cut(s)	115, 334, 397, 1067, 1816, 1933
MboII	GAAGA	8 cut(s)	524, 689, 800, 877, 1109, 1193, 1200, 1823
MhlI	GDGCHC	2 cut(s)	1114, 1396
MlsI	TGGCCA	1 cut(s)	474
MluNI	TGGCCA	1 cut(s)	474
MlyI	GAGTC	3 cut(s)	458, 671, 1853
Mox20I	TGGCCA	1 cut(s)	474
MroI	TCCGGA	1 cut(s)	591
MroXI	GAANNNNTTC	1 cut(s)	1830
MscI	TGGCCA	1 cut(s)	474
MseI	TTAA	3 cut(s)	375, 557, 957
Msp20I	TGGCCA	1 cut(s)	474
MspA1I	CMGCKG	5 cut(s)	50, 166, 1623, 1768, 1931
MspI	CCGG	4 cut(s)	23, 211, 592, 1797
MspR9I	CCNGG	9 cut(s)	23, 211, 1275, 1284, 1344, 1374, 1386, 1452, 1581
Mva1269I	GAATGC	2 cut(s)	37, 1082
MvaI	CCWGG	7 cut(s)	1275, 1284, 1344, 1374, 1386, 1452, 1581
MvnI	CGCG	2 cut(s)	41, 944
NciI	CCSGG	2 cut(s)	23, 211
NdeI	CATATG	1 cut(s)	1612
NdeII	GATC	6 cut(s)	115, 334, 397, 1067, 1816, 1933
NlaIII	CATG	8 cut(s)	416, 1032, 1042, 1504, 1579, 1600, 1639, 1804
NlaIV	GGNNCC	6 cut(s)	21, 79, 1239, 1395, 1573, 1773
NmuCI	GTSAC	3 cut(s)	91, 130, 1950
NspI	RCATGY	3 cut(s)	1600, 1639, 1804
PaeI	GCATGC	2 cut(s)	1639, 1804
PaeR7I	CTCGAG	1 cut(s)	1841
PaqCI	CACCTGC	1 cut(s)	1330
PceI	AGGCCT	1 cut(s)	1384
PciSI	GCTCTTC	1 cut(s)	1183
PctI	GAATGC	2 cut(s)	37, 1082
PdmI	GAANNNNTTC	1 cut(s)	1830
PfeI	GAWTC	4 cut(s)	137, 630, 652, 1744
PflFI	GACNNNGTC	1 cut(s)	97
PflMI	CCANNNNNTGG	1 cut(s)	1289
PleI	GAGTC	3 cut(s)	458, 670, 1852
PpsI	GAGTC	3 cut(s)	458, 670, 1852
PpuMI	RGGWCCY	1 cut(s)	19
Psp124BI	GAGCTC	1 cut(s)	1114
Psp1406I	AACGTT	1 cut(s)	1899
Psp5II	RGGWCCY	1 cut(s)	19
Psp6I	CCWGG	7 cut(s)	1273, 1282, 1342, 1372, 1384, 1450, 1579
PspEI	GGTNACC	1 cut(s)	1792
PspFI	CCCAGC	3 cut(s)	166, 1338, 1735
PspGI	CCWGG	7 cut(s)	1273, 1282, 1342, 1372, 1384, 1450, 1579
PspN4I	GGNNCC	6 cut(s)	21, 79, 1239, 1395, 1573, 1773
PspPI	GGNCC	7 cut(s)	19, 306, 581, 859, 1280, 1316, 1571
PspPPI	RGGWCCY	1 cut(s)	19
PspXI	VCTCGAGB	1 cut(s)	1841
PsyI	GACNNNGTC	1 cut(s)	97
PvuII	CAGCTG	3 cut(s)	166, 1768, 1931
RsaI	GTAC	4 cut(s)	323, 498, 613, 1268
RsaNI	GTAC	4 cut(s)	322, 497, 612, 1267
SacI	GAGCTC	1 cut(s)	1114
SapI	GCTCTTC	1 cut(s)	1183
SaqAI	TTAA	3 cut(s)	375, 557, 957
Sau3AI	GATC	6 cut(s)	115, 334, 397, 1067, 1816, 1933
Sau96I	GGNCC	7 cut(s)	19, 306, 581, 859, 1280, 1316, 1571
ScaI	AGTACT	1 cut(s)	613
SchI	GAGTC	3 cut(s)	458, 671, 1853
ScrFI	CCNGG	9 cut(s)	23, 211, 1275, 1284, 1344, 1374, 1386, 1452, 1581
SduI	GDGCHC	2 cut(s)	1114, 1396
SfaNI	GCATC	6 cut(s)	247, 781, 1494, 1506, 1639, 1722
SfcI	CTRYAG	4 cut(s)	459, 531, 975, 1199
Sfr274I	CTCGAG	1 cut(s)	1841
SinI	GGWCC	4 cut(s)	19, 581, 1280, 1571
SlaI	CTCGAG	1 cut(s)	1841
SmlI	CTYRAG	1 cut(s)	1841
SmoI	CTYRAG	1 cut(s)	1841
SpeI	ACTAGT	1 cut(s)	716
SphI	GCATGC	2 cut(s)	1639, 1804
SseBI	AGGCCT	1 cut(s)	1384
SsiI	CCGC	9 cut(s)	41, 50, 53, 59, 72, 1222, 1540, 1623, 1626
SspI	AATATT	1 cut(s)	1302
SspMI	CTAG	5 cut(s)	264, 339, 717, 798, 1050
SstI	GAGCTC	1 cut(s)	1114
StuI	AGGCCT	1 cut(s)	1384
StyD4I	CCNGG	9 cut(s)	21, 209, 1273, 1282, 1342, 1372, 1384, 1450, 1579
StyI	CCWWGG	1 cut(s)	1523
TaaI	ACNGT	3 cut(s)	68, 611, 1659
TaiI	ACGT	5 cut(s)	101, 111, 132, 1465, 1902
TaqI	TCGA	3 cut(s)	752, 1555, 1842
TatI	WGTACW	3 cut(s)	321, 496, 611
TauI	GCSGC	6 cut(s)	44, 53, 56, 62, 1225, 1626
TfiI	GAWTC	4 cut(s)	137, 630, 652, 1744
Tru1I	TTAA	3 cut(s)	375, 557, 957
Tru9I	TTAA	3 cut(s)	375, 557, 957
TscAI	CASTG	1 cut(s)	1662
TseFI	GTSAC	3 cut(s)	91, 130, 1950
Tsp45I	GTSAC	3 cut(s)	91, 130, 1950
TspDTI	ATGAA	6 cut(s)	525, 900, 929, 1139, 1823, 1974
TspGWI	ACGGA	2 cut(s)	457, 1634
TspRI	CASTG	1 cut(s)	1662
Tth111I	GACNNNGTC	1 cut(s)	97
Van91I	CCANNNNNTGG	1 cut(s)	1289
VpaK11BI	GGWCC	4 cut(s)	19, 581, 1280, 1571
XapI	RAATTY	6 cut(s)	238, 379, 701, 827, 961, 1405
XceI	RCATGY	3 cut(s)	1600, 1639, 1804
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1346
XhoI	CTCGAG	1 cut(s)	1841
XmiI	GTMKAC	2 cut(s)	1536, 1561
XmnI	GAANNNNTTC	1 cut(s)	1830
XspI	CTAG	5 cut(s)	264, 339, 717, 798, 1050
ZraI	GACGTC	1 cut(s)	99
ZrmI	AGTACT	1 cut(s)	613

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.