Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002826

Physical Location & Seq

Genomic Coordinates Reverse (-)

16726948 .. 16728531

Gene Structure 1584 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G35150.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGGAAGAAAGTAAAAGGAATTTATTAGATGAAGAAGCGAAAGCTTCTTTAGACATATGGAGATATGTTTTTGGGTTTGCAGATATTGCAGCTGCAAAGTGTGCCATTGATCTCAAAATACCAGAAGCCATTGAAAACCATCCTTCGTCACAGCCCGTGACACTATCCGAACTCTCCTCTGCCGTCTCTGCTTCTCCTTCACATCTCCGCCGTATAATGCGGTTTCTTGTGCACCAAGGACTCTTCAAAGAAGTCCCCACAAAAGATGGTTTAGCCACTGGCTACACTAACACGCCACTCTCTCGCCGTATGATGATCACAAAACTGCATGGTAAGGACTTGTGGGCGTTCGCACAGGATAATCTGTGCCACAGCCAGCTGATCAACGAGGCCATGGCTTGTGATGCAAGGCGCGTGGTGCCACGTGTAGCTGGAGCTTGTCAAGGCTTGTTTGACGGCGTGGCTACGGTGGTTGACGTAGGAGGAGGTACCGGAGAGACGATGGGAATACTTGTAAAGGAGTTTCCTTGGATCAAAGGATTTAACTTTGACCTTCCTCATGTTATTGAAGTTGCTCAAGTCTTGGACGGTGTTGAGAATGTTGAGGGCGATATGTTTGATTCTATTCCGGCAAGCGACGCTGTTATCATCAAGTGGGTGTTACACGATTGGGGAGACAAAGATTGCATAAAGATATTGAAGAATTGCAAAGAAGCTGTTCTACCAAATATCGGCAAAGTGTTGATAGTGGAGTGTGTTATCGGAGAGAAGAAAAACACGATGATAGCGGAAGAAAGAGATGACAAGTTAGAGCACGTGAGATTGCAGCTTGACATGGTGATGATGGTTCACACAAGCACAGGCAAAGAACGAACTTTGAAAGAATGGGACTTTGTTCTTACAGAAGCTGGCTTTGCTCGATATGAGGTTAGAGACTTTGATGATGTTCAGTCTCTTATCATCGCATATCGATCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0008757 GO:0009058 GO:0009987 GO:0010817 GO:0016740 GO:0016741 GO:0017096 GO:0017144 GO:0018130 GO:0019438 GO:0030186 GO:0030187 GO:0032259 GO:0034641 GO:0034754 GO:0042430 GO:0042435 GO:0042445 GO:0042446 GO:0043603 GO:0043604 GO:0044237 GO:0044249 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0065007 GO:0065008 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dimerisation Methyltransf_2

Protein Analysis

325

Amino Acids

36.26

Weight (kDa)

5.28

Isoelectric Point (pI)

35.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dimerisation	PF08100	20 - 105	4.1e-21	O-methyltransferase dimerisation domain
Methyltransf_2	PF00891	105 - 306	3e-45	O-methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002826)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35150 AT4G35160
fragaria_vesca	FvH4_2g15840 FvH4_2g15880 FvH4_2g15880
malus_domestica	MD05G1127400.v1.1 MD05G1127600.v1.1 MD05G1127900.v1.1 MD05G1128000.v1.1 MD05G1128100.v1.1
prunus_persica	Prupe.8G171000_v2.0.a1 Prupe.8G171100_v2.0.a1 Prupe.8G171400_v2.0.a1 Prupe.8G171900_v2.0.a1 Prupe.8G172000_v2.0.a1
pyrus_communis	pycom05g12360 pycom05g12370 pycom05g12400
rosa_chinensis	RchiOBHm_Chr6g0279261 RchiOBHm_Chr6g0279331 RchiOBHm_Chr6g0279441
rosa_laevigata	RLG00000013151 RLG00000013152
rosa_multiflora	Rmu_sc0009584.1_g000002 Rmu_sc0026652.1_g000001
rosa_roxburghii	Rroxscaffold_7G00188960 Rroxscaffold_7G00188980 Rroxscaffold_7G00189010
rosa_rugosa	Rorug06G0124200 Rorug06G0124200
rosa_samantha	Rh6AG232600 Rh6AG232800 Rh6AG233200 Rh6BG237200 Rh6BG237500 Rh6CG239300 Rh6CG239700
rosa_wichuraiana	Rw6G020330 Rw6G020360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	488
AccB1I	GGYRCC	2 cut(s)	418, 488
AccII	CGCG	1 cut(s)	414
AciI	CCGC	3 cut(s)	208, 220, 788
AclWI	GGATC	1 cut(s)	539
AcsI	RAATTY	1 cut(s)	19
AcvI	CACGTG	2 cut(s)	425, 817
AfaI	GTAC	1 cut(s)	490
AfiI	CCNNNNNNNGG	1 cut(s)	731
AflIII	ACRYGT	1 cut(s)	424
AgsI	TTSAA	5 cut(s)	134, 247, 569, 700, 880
AluBI	AGCT	8 cut(s)	44, 92, 379, 431, 437, 716, 829, 908
AluI	AGCT	8 cut(s)	44, 92, 379, 431, 437, 716, 829, 908
Alw21I	GWGCWC	2 cut(s)	234, 816
Alw26I	GTCTC	5 cut(s)	190, 491, 669, 927, 957
Alw44I	GTGCAC	1 cut(s)	230
AlwI	GGATC	1 cut(s)	539
AlwNI	CAGNNNCTG	1 cut(s)	908
AoxI	GGCC	1 cut(s)	390
ApaLI	GTGCAC	1 cut(s)	230
ApeKI	GCWGC	3 cut(s)	89, 92, 826
ApoI	RAATTY	1 cut(s)	19
Asp700I	GAANNNNTTC	1 cut(s)	717
Asp718I	GGTACC	1 cut(s)	488
AspLEI	GCGC	1 cut(s)	414
AsuHPI	GGTGA	1 cut(s)	850
BaeGI	GKGCMC	1 cut(s)	234
BanI	GGYRCC	2 cut(s)	418, 488
BarI	GAAGNNNNNNTAC	2 cut(s)	705, 737
BbrPI	CACGTG	2 cut(s)	425, 817
Bbv12I	GWGCWC	2 cut(s)	234, 816
BbvI	GCAGC	3 cut(s)	79, 101, 838
BccI	CCATC	4 cut(s)	147, 260, 496, 838
BceAI	ACGGC	4 cut(s)	167, 195, 291, 472
BclI	TGATCA	2 cut(s)	315, 381
BcoDI	GTCTC	5 cut(s)	190, 491, 669, 927, 957
BisI	GCNGC	3 cut(s)	90, 93, 827
BlsI	GCNGC	3 cut(s)	91, 94, 828
BmiI	GGNNCC	2 cut(s)	420, 490
BmsI	GCATC	1 cut(s)	394
BpmI	CTGGAG	1 cut(s)	453
BpuEI	CTTGAG	1 cut(s)	561
Bsa29I	ATCGAT	1 cut(s)	970
BsaAI	YACGTR	2 cut(s)	425, 817
BsaJI	CCNNGG	3 cut(s)	235, 393, 527
BsaWI	WCCGGW	1 cut(s)	491
Bsc4I	CCNNNNNNNGG	1 cut(s)	731
Bse1I	ACTGG	1 cut(s)	283
BseCI	ATCGAT	1 cut(s)	970
BseDI	CCNNGG	3 cut(s)	235, 393, 527
BseGI	GGATG	1 cut(s)	139
BseLI	CCNNNNNNNGG	1 cut(s)	731
BseNI	ACTGG	1 cut(s)	283
BseRI	GAGGAG	2 cut(s)	166, 498
BseSI	GKGCMC	1 cut(s)	234
BseXI	GCAGC	3 cut(s)	79, 101, 838
Bsh1236I	CGCG	1 cut(s)	414
BshFI	GGCC	1 cut(s)	392
BshNI	GGYRCC	2 cut(s)	418, 488
BshVI	ATCGAT	1 cut(s)	970
BsiHKAI	GWGCWC	2 cut(s)	234, 816
BsiSI	CCGG	2 cut(s)	492, 629
BslFI	GGGAC	2 cut(s)	239, 902
BslI	CCNNNNNNNGG	1 cut(s)	731
BsmAI	GTCTC	5 cut(s)	190, 491, 669, 927, 957
BsmBI	CGTCTC	2 cut(s)	190, 491
BsmFI	GGGAC	2 cut(s)	239, 902
BsnI	GGCC	1 cut(s)	392
Bsp1286I	GDGCHC	2 cut(s)	234, 816
Bsp143I	GATC	5 cut(s)	109, 315, 381, 531, 971
Bsp19I	CCATGG	1 cut(s)	393
BspACI	CCGC	3 cut(s)	208, 220, 788
BspANI	GGCC	1 cut(s)	392
BspDI	ATCGAT	1 cut(s)	970
BspFNI	CGCG	1 cut(s)	414
BspLI	GGNNCC	2 cut(s)	420, 490
BspPI	GGATC	1 cut(s)	539
BspT107I	GGYRCC	2 cut(s)	418, 488
BsrI	ACTGG	1 cut(s)	283
BssECI	CCNNGG	3 cut(s)	235, 393, 527
BssMI	GATC	5 cut(s)	109, 315, 381, 531, 971
BssT1I	CCWWGG	3 cut(s)	235, 393, 527
Bst4CI	ACNGT	2 cut(s)	469, 590
Bst6I	CTCTTC	1 cut(s)	248
BstAPI	GCANNNNNTGC	2 cut(s)	86, 101
BstBAI	YACGTR	2 cut(s)	425, 817
BstC8I	GCNNGC	3 cut(s)	377, 634, 910
BstDSI	CCRYGG	1 cut(s)	393
BstF5I	GGATG	1 cut(s)	139
BstFNI	CGCG	1 cut(s)	414
BstHHI	GCGC	1 cut(s)	414
BstKTI	GATC	5 cut(s)	112, 318, 384, 534, 974
BstMAI	GTCTC	5 cut(s)	190, 491, 669, 927, 957
BstMBI	GATC	5 cut(s)	109, 315, 381, 531, 971
BstMWI	GCNNNNNNNGC	7 cut(s)	86, 101, 188, 404, 418, 638, 914
BstSLI	GKGCMC	1 cut(s)	234
BstUI	CGCG	1 cut(s)	414
BstV1I	GCAGC	3 cut(s)	79, 101, 838
Bsu15I	ATCGAT	1 cut(s)	970
BsuRI	GGCC	1 cut(s)	392
BsuTUI	ATCGAT	1 cut(s)	970
BtgI	CCRYGG	1 cut(s)	393
BtgZI	GCGATG	1 cut(s)	946
BtsCI	GGATG	1 cut(s)	139
BtsIMutI	CAGTG	1 cut(s)	276
Cac8I	GCNNGC	3 cut(s)	377, 634, 910
CaiI	CAGNNNCTG	1 cut(s)	908
CfoI	GCGC	1 cut(s)	414
ClaI	ATCGAT	1 cut(s)	970
CseI	GACGC	1 cut(s)	647
Csp6I	GTAC	1 cut(s)	489
CspCI	CAANNNNNGTGG	2 cut(s)	396, 431
CviAII	CATG	4 cut(s)	329, 394, 560, 835
CviQI	GTAC	1 cut(s)	489
DpnI	GATC	5 cut(s)	111, 317, 383, 533, 973
DpnII	GATC	5 cut(s)	109, 315, 381, 531, 971
Eam1104I	CTCTTC	1 cut(s)	248
EarI	CTCTTC	1 cut(s)	248
EciI	GGCGGA	1 cut(s)	197
Eco130I	CCWWGG	3 cut(s)	235, 393, 527
Eco72I	CACGTG	2 cut(s)	425, 817
EcoT14I	CCWWGG	3 cut(s)	235, 393, 527
ErhI	CCWWGG	3 cut(s)	235, 393, 527
Esp3I	CGTCTC	2 cut(s)	190, 491
FaeI	CATG	4 cut(s)	332, 397, 563, 838
FaqI	GGGAC	2 cut(s)	239, 902
FatI	CATG	4 cut(s)	328, 393, 559, 834
FauNDI	CATATG	1 cut(s)	56
FbaI	TGATCA	2 cut(s)	315, 381
Fnu4HI	GCNGC	3 cut(s)	90, 93, 827
FokI	GGATG	1 cut(s)	126
Fsp4HI	GCNGC	3 cut(s)	90, 93, 827
GlaI	GCGC	1 cut(s)	413
GluI	GCNGC	3 cut(s)	90, 93, 827
GsuI	CTGGAG	1 cut(s)	453
HaeIII	GGCC	1 cut(s)	392
HapII	CCGG	2 cut(s)	492, 629
HgaI	GACGC	1 cut(s)	647
HhaI	GCGC	1 cut(s)	414
Hin1II	CATG	4 cut(s)	332, 397, 563, 838
Hin6I	GCGC	1 cut(s)	412
HinP1I	GCGC	1 cut(s)	412
HincII	GTYRAC	1 cut(s)	475
HindII	GTYRAC	1 cut(s)	475
HindIII	AAGCTT	1 cut(s)	42
HinfI	GANTC	2 cut(s)	240, 620
HpaII	CCGG	2 cut(s)	492, 629
HphI	GGTGA	1 cut(s)	850
Hpy166II	GTNNAC	3 cut(s)	232, 475, 850
Hpy188I	TCNGA	2 cut(s)	169, 764
Hpy8I	GTNNAC	3 cut(s)	232, 475, 850
Hpy99I	CGWCG	1 cut(s)	641
HpyAV	CCTTC	3 cut(s)	153, 207, 563
HpyCH4III	ACNGT	2 cut(s)	469, 590
HpyCH4IV	ACGT	3 cut(s)	424, 477, 816
HpyCH4V	TGCA	9 cut(s)	80, 89, 95, 232, 328, 407, 687, 708, 826
HpyF10VI	GCNNNNNNNGC	7 cut(s)	86, 101, 188, 404, 418, 638, 914
HpySE526I	ACGT	3 cut(s)	424, 477, 816
Hsp92II	CATG	4 cut(s)	332, 397, 563, 838
HspAI	GCGC	1 cut(s)	412
KpnI	GGTACC	1 cut(s)	492
Ksp22I	TGATCA	2 cut(s)	315, 381
Kzo9I	GATC	5 cut(s)	109, 315, 381, 531, 971
LmnI	GCTCC	1 cut(s)	434
LpnPI	CCDG	9 cut(s)	135, 264, 341, 389, 417, 505, 642, 846, 894
Lsp1109I	GCAGC	3 cut(s)	79, 101, 838
LweI	GCATC	1 cut(s)	394
MaeII	ACGT	3 cut(s)	424, 477, 816
MaeIII	GTNAC	3 cut(s)	147, 157, 660
MalI	GATC	5 cut(s)	111, 317, 383, 533, 973
MboI	GATC	5 cut(s)	109, 315, 381, 531, 971
MboII	GAAGA	6 cut(s)	17, 44, 235, 712, 781, 803
MhlI	GDGCHC	2 cut(s)	234, 816
MluCI	AATT	2 cut(s)	19, 703
MlyI	GAGTC	1 cut(s)	234
MnlI	CCTC	7 cut(s)	187, 382, 476, 479, 567, 598, 919
MroXI	GAANNNNTTC	1 cut(s)	717
MseI	TTAA	2 cut(s)	543, 976
MslI	CAYNNNNRTG	1 cut(s)	839
MspA1I	CMGCKG	2 cut(s)	92, 379
MspI	CCGG	2 cut(s)	492, 629
MvnI	CGCG	1 cut(s)	414
MwoI	GCNNNNNNNGC	7 cut(s)	86, 101, 188, 404, 418, 638, 914
NcoI	CCATGG	1 cut(s)	393
NdeI	CATATG	1 cut(s)	56
NdeII	GATC	5 cut(s)	109, 315, 381, 531, 971
NlaIII	CATG	4 cut(s)	332, 397, 563, 838
NlaIV	GGNNCC	2 cut(s)	420, 490
NmuCI	GTSAC	2 cut(s)	147, 157
PdmI	GAANNNNTTC	1 cut(s)	717
PfeI	GAWTC	1 cut(s)	620
PkrI	GCNGC	3 cut(s)	91, 94, 828
PleI	GAGTC	1 cut(s)	234
PmaCI	CACGTG	2 cut(s)	425, 817
PmlI	CACGTG	2 cut(s)	425, 817
PpsI	GAGTC	1 cut(s)	234
Ppu21I	YACGTR	2 cut(s)	425, 817
PspCI	CACGTG	2 cut(s)	425, 817
PspN4I	GGNNCC	2 cut(s)	420, 490
PstNI	CAGNNNCTG	1 cut(s)	908
PvuII	CAGCTG	2 cut(s)	92, 379
RsaI	GTAC	1 cut(s)	490
RsaNI	GTAC	1 cut(s)	489
RseI	CAYNNNNRTG	1 cut(s)	839
SaqAI	TTAA	2 cut(s)	543, 976
SatI	GCNGC	3 cut(s)	90, 93, 827
Sau3AI	GATC	5 cut(s)	109, 315, 381, 531, 971
SchI	GAGTC	1 cut(s)	234
SduI	GDGCHC	2 cut(s)	234, 816
SfaNI	GCATC	1 cut(s)	394
SmiMI	CAYNNNNRTG	1 cut(s)	839
SmlI	CTYRAG	1 cut(s)	576
SmoI	CTYRAG	1 cut(s)	576
Sse9I	AATT	2 cut(s)	19, 703
SsiI	CCGC	3 cut(s)	208, 220, 788
StyI	CCWWGG	3 cut(s)	235, 393, 527
TaaI	ACNGT	2 cut(s)	469, 590
TaiI	ACGT	3 cut(s)	427, 480, 819
TaqI	TCGA	2 cut(s)	919, 970
TasI	AATT	2 cut(s)	19, 703
TfiI	GAWTC	1 cut(s)	620
Tru1I	TTAA	2 cut(s)	543, 976
Tru9I	TTAA	2 cut(s)	543, 976
TscAI	CASTG	1 cut(s)	283
TseFI	GTSAC	2 cut(s)	147, 157
TseI	GCWGC	3 cut(s)	89, 92, 826
Tsp45I	GTSAC	2 cut(s)	147, 157
TspDTI	ATGAA	1 cut(s)	45
TspRI	CASTG	1 cut(s)	283
VneI	GTGCAC	1 cut(s)	230
XapI	RAATTY	1 cut(s)	19
XmnI	GAANNNNTTC	1 cut(s)	717

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.