Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002826

Physical Location & Seq

Genomic Coordinates Reverse (-)

16730703 .. 16732923

Gene Structure 2221 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G35160.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1149 bp

ATGTCTTCAGATCAACTAAGCAAATTCCTTGATAGAAACAAAATGGAAGACAATAAAAGAAAAGTATTAGATGAAGAAGCGAAAGCTTCTCTAGACATATGGAAGTATGTCTTTGGGTTTGCAGATATAGCAGCTGCAAAGTGTGCCATTGATCTTAAAATACCAGAAGCCATTGAAAACCATCCTTCTTCACAGCCCGTAACACTAGCCGAACTCTCCTCCGCCGTCTCCGCCTCTCCCTCGCATCTCCGCCGTATAATGAGGTTTCTTGTACACCAAGGAATCTTTAAAGAAATCCCCACAAAAGATGGTTTAGCTACAGGCTACGTTAATACGCCACTCTCTCGCCGTTTGATGATCACAAGACGTGATGGAAAATCGCTGGCTCCTTTTGTTCTCTTCGAAACAACTCCCGAGATGCTCGCTCCATGGTTGAGACTTAGCTCAGTCGTTTCTTCGCCGGTCAACGGTTCAACTCCACCACCGTTTGATGCAGTGCACGGTAAGGACGTGTGGTCGTTCGCGCAGGATAATCCCTTCCTCAGCGATATGATCAATGAGGCCATGGCTTGTGATGCAAGGCGCGTGGTGCCACGTGTAGCCGGAGCTTGTCACGGCTTGTTTGATGGCGTGACTACGATGGTTGACGTAGGAGGTGGTACGGGAGAGACGATGGGGATGCTTGTGAAGGAGTTTCCTTGGATCAAAGGATTTAACTTTGATCTTCCTCATGTCATTGAAGTTGCTGAAGTCTTGGACGGTGTTGAGAATGTTGAGGGCGATATGTTTGATTCTATTCCGGCTTGCGACGCCATTTTCATCAAGTGGGTGTTACACGATTGGGGAGACAAAGATTGCATAAAGATATTGAAGAATTGCAAAGAAGCGGTCCCTCCAAATATCGGAAAAGTGTTGATAGTGGAATCGGTGATCGGAGAGAATAAAAAGACGATGATAGTGGACGAACGAGATGAAAAGTTAGAGCACGTGAGATTGATGCTTGATATGGTGATGATGGCTCACACAAGCACAGGCAAAGAACGGACTTTGAAAGAATGGGACTTTGTTCTTAAAGAAGCTGGCTTTGCTCGATATGAGGTTAGGGACATTGATGATGTTCAGAGTCTTATAATCGCGTATCGGTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0008757 GO:0009058 GO:0009987 GO:0010817 GO:0016740 GO:0016741 GO:0017096 GO:0017144 GO:0018130 GO:0019438 GO:0030186 GO:0030187 GO:0032259 GO:0034641 GO:0034754 GO:0042430 GO:0042435 GO:0042445 GO:0042446 GO:0043603 GO:0043604 GO:0044237 GO:0044249 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0065007 GO:0065008 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dimerisation Methyltransf_2

Protein Analysis

382

Amino Acids

42.61

Weight (kDa)

5.32

Isoelectric Point (pI)

41.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dimerisation	PF08100	34 - 119	3.3e-20	O-methyltransferase dimerisation domain
Methyltransf_2	PF00891	161 - 363	5.6e-47	O-methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002826)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35150 AT4G35160
fragaria_vesca	FvH4_2g15840 FvH4_2g15880 FvH4_2g15880
malus_domestica	MD05G1127400.v1.1 MD05G1127600.v1.1 MD05G1127900.v1.1 MD05G1128000.v1.1 MD05G1128100.v1.1
prunus_persica	Prupe.8G171000_v2.0.a1 Prupe.8G171100_v2.0.a1 Prupe.8G171400_v2.0.a1 Prupe.8G171900_v2.0.a1 Prupe.8G172000_v2.0.a1
pyrus_communis	pycom05g12360 pycom05g12370 pycom05g12400
rosa_chinensis	RchiOBHm_Chr6g0279261 RchiOBHm_Chr6g0279331 RchiOBHm_Chr6g0279441
rosa_laevigata	RLG00000013151 RLG00000013152
rosa_multiflora	Rmu_sc0009584.1_g000002 Rmu_sc0026652.1_g000001
rosa_roxburghii	Rroxscaffold_7G00188960 Rroxscaffold_7G00188980 Rroxscaffold_7G00189010
rosa_rugosa	Rorug06G0124200 Rorug06G0124200
rosa_samantha	Rh6AG232600 Rh6AG232800 Rh6AG233200 Rh6BG237200 Rh6BG237500 Rh6CG239300 Rh6CG239700
rosa_wichuraiana	Rw6G020330 Rw6G020360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1130
AccB1I	GGYRCC	1 cut(s)	589
AccII	CGCG	3 cut(s)	524, 585, 1136
AciI	CCGC	4 cut(s)	222, 231, 250, 887
AclWI	GGATC	1 cut(s)	710
AcsI	RAATTY	1 cut(s)	23
AcuI	CTGAAG	1 cut(s)	768
AcvI	CACGTG	2 cut(s)	596, 988
AcyI	GRCGYC	1 cut(s)	810
AfaI	GTAC	2 cut(s)	273, 661
AfiI	CCNNNNNNNGG	2 cut(s)	467, 902
AflIII	ACRYGT	2 cut(s)	510, 595
AgsI	TTSAA	5 cut(s)	176, 474, 740, 871, 1051
AhdI	GACNNNNNGTC	1 cut(s)	514
AjiI	CACGTC	2 cut(s)	368, 511
AluBI	AGCT	6 cut(s)	86, 134, 317, 444, 608, 1079
AluI	AGCT	6 cut(s)	86, 134, 317, 444, 608, 1079
Alw21I	GWGCWC	2 cut(s)	501, 987
Alw26I	GTCTC	4 cut(s)	232, 430, 662, 840
Alw44I	GTGCAC	1 cut(s)	497
AlwI	GGATC	1 cut(s)	710
Ama87I	CYCGRG	1 cut(s)	413
AoxI	GGCC	1 cut(s)	561
ApaLI	GTGCAC	1 cut(s)	497
ApeKI	GCWGC	2 cut(s)	131, 134
ApoI	RAATTY	1 cut(s)	23
ArsI	GACNNNNNNTTYG	2 cut(s)	873, 905
AspLEI	GCGC	2 cut(s)	526, 585
AspS9I	GGNCC	1 cut(s)	889
AsuHPI	GGTGA	2 cut(s)	940, 1021
AsuII	TTCGAA	1 cut(s)	402
AvaI	CYCGRG	1 cut(s)	413
AvaII	GGWCC	1 cut(s)	889
BaeGI	GKGCMC	1 cut(s)	501
BanI	GGYRCC	1 cut(s)	589
BbrPI	CACGTG	2 cut(s)	596, 988
BbsI	GAAGAC	1 cut(s)	54
Bbv12I	GWGCWC	2 cut(s)	501, 987
BbvCI	CCTCAGC	1 cut(s)	542
BbvI	GCAGC	2 cut(s)	121, 143
BccI	CCATC	7 cut(s)	189, 302, 365, 620, 634, 667, 1009
BceAI	ACGGC	4 cut(s)	209, 237, 333, 631
BcgI	CGANNNNNNTGC	2 cut(s)	661, 695
BclI	TGATCA	2 cut(s)	357, 552
BcoDI	GTCTC	4 cut(s)	232, 430, 662, 840
BfaI	CTAG	2 cut(s)	92, 206
BfmI	CTRYAG	1 cut(s)	318
BisI	GCNGC	2 cut(s)	132, 135
BlsI	GCNGC	2 cut(s)	133, 136
Bme18I	GGWCC	1 cut(s)	889
BmeRI	GACNNNNNGTC	1 cut(s)	514
BmeT110I	CYCGRG	1 cut(s)	413
BmgBI	CACGTC	2 cut(s)	368, 511
BmgT120I	GGNCC	1 cut(s)	889
BmiI	GGNNCC	3 cut(s)	387, 591, 891
BmsI	GCATC	6 cut(s)	253, 408, 481, 565, 669, 987
BpiI	GAAGAC	1 cut(s)	54
Bpu10I	CCTNAGC	1 cut(s)	542
Bpu14I	TTCGAA	1 cut(s)	402
BsaAI	YACGTR	2 cut(s)	596, 988
BsaHI	GRCGYC	1 cut(s)	810
BsaJI	CCNNGG	4 cut(s)	277, 428, 564, 698
Bsc4I	CCNNNNNNNGG	2 cut(s)	467, 902
Bse118I	RCCGGY	1 cut(s)	460
BseDI	CCNNGG	4 cut(s)	277, 428, 564, 698
BseGI	GGATG	2 cut(s)	181, 684
BseLI	CCNNNNNNNGG	2 cut(s)	467, 902
BseMII	CTCAG	2 cut(s)	459, 556
BseRI	GAGGAG	1 cut(s)	208
BseSI	GKGCMC	1 cut(s)	501
BseXI	GCAGC	2 cut(s)	121, 143
Bsh1236I	CGCG	3 cut(s)	524, 585, 1136
BshFI	GGCC	1 cut(s)	563
BshNI	GGYRCC	1 cut(s)	589
BsiHKAI	GWGCWC	2 cut(s)	501, 987
BsiHKCI	CYCGRG	1 cut(s)	413
BsiSI	CCGG	3 cut(s)	461, 603, 800
BslFI	GGGAC	3 cut(s)	875, 1073, 1118
BslI	CCNNNNNNNGG	2 cut(s)	467, 902
BsmAI	GTCTC	4 cut(s)	232, 430, 662, 840
BsmBI	CGTCTC	2 cut(s)	232, 662
BsmFI	GGGAC	3 cut(s)	875, 1073, 1118
BsnI	GGCC	1 cut(s)	563
BsoBI	CYCGRG	1 cut(s)	413
Bsp119I	TTCGAA	1 cut(s)	402
Bsp1286I	GDGCHC	2 cut(s)	501, 987
Bsp1407I	TGTACA	1 cut(s)	271
Bsp143I	GATC	7 cut(s)	10, 151, 357, 552, 702, 721, 930
Bsp19I	CCATGG	2 cut(s)	428, 564
BspACI	CCGC	4 cut(s)	222, 231, 250, 887
BspANI	GGCC	1 cut(s)	563
BspCNI	CTCAG	2 cut(s)	458, 555
BspFNI	CGCG	3 cut(s)	524, 585, 1136
BspLI	GGNNCC	3 cut(s)	387, 591, 891
BspPI	GGATC	1 cut(s)	710
BspT104I	TTCGAA	1 cut(s)	402
BspT107I	GGYRCC	1 cut(s)	589
BsrFI	RCCGGY	1 cut(s)	460
BsrGI	TGTACA	1 cut(s)	271
BssAI	RCCGGY	1 cut(s)	460
BssECI	CCNNGG	4 cut(s)	277, 428, 564, 698
BssMI	GATC	7 cut(s)	10, 151, 357, 552, 702, 721, 930
BssNI	GRCGYC	1 cut(s)	810
BssT1I	CCWWGG	4 cut(s)	277, 428, 564, 698
Bst4CI	ACNGT	4 cut(s)	470, 486, 503, 761
Bst6I	CTCTTC	1 cut(s)	404
BstACI	GRCGYC	1 cut(s)	810
BstAPI	GCANNNNNTGC	1 cut(s)	143
BstAUI	TGTACA	1 cut(s)	271
BstBAI	YACGTR	2 cut(s)	596, 988
BstBI	TTCGAA	1 cut(s)	402
BstC8I	GCNNGC	4 cut(s)	384, 423, 805, 1081
BstDEI	CTNAG	4 cut(s)	17, 440, 445, 542
BstDSI	CCRYGG	2 cut(s)	428, 564
BstF5I	GGATG	2 cut(s)	181, 684
BstFNI	CGCG	3 cut(s)	524, 585, 1136
BstHHI	GCGC	2 cut(s)	526, 585
BstKTI	GATC	7 cut(s)	13, 154, 360, 555, 705, 724, 933
BstMAI	GTCTC	4 cut(s)	232, 430, 662, 840
BstMBI	GATC	7 cut(s)	10, 151, 357, 552, 702, 721, 930
BstMWI	GCNNNNNNNGC	7 cut(s)	128, 143, 230, 575, 589, 809, 1085
BstSFI	CTRYAG	1 cut(s)	318
BstSLI	GKGCMC	1 cut(s)	501
BstUI	CGCG	3 cut(s)	524, 585, 1136
BstV1I	GCAGC	2 cut(s)	121, 143
BstV2I	GAAGAC	1 cut(s)	54
BsuRI	GGCC	1 cut(s)	563
BtgI	CCRYGG	2 cut(s)	428, 564
BtrI	CACGTC	2 cut(s)	368, 511
BtsCI	GGATG	2 cut(s)	181, 684
BtsI	GCAGTG	1 cut(s)	501
BtsIMutI	CAGTG	1 cut(s)	501
Cac8I	GCNNGC	4 cut(s)	384, 423, 805, 1081
CfoI	GCGC	2 cut(s)	526, 585
Cfr10I	RCCGGY	1 cut(s)	460
Cfr13I	GGNCC	1 cut(s)	889
CseI	GACGC	1 cut(s)	818
Csp6I	GTAC	2 cut(s)	272, 660
CspCI	CAANNNNNGTGG	2 cut(s)	567, 602
CviAII	CATG	3 cut(s)	429, 565, 731
CviQI	GTAC	2 cut(s)	272, 660
DdeI	CTNAG	4 cut(s)	17, 440, 445, 542
DpnI	GATC	7 cut(s)	12, 153, 359, 554, 704, 723, 932
DpnII	GATC	7 cut(s)	10, 151, 357, 552, 702, 721, 930
DraI	TTTAAA	1 cut(s)	289
DriI	GACNNNNNGTC	1 cut(s)	514
Eam1104I	CTCTTC	1 cut(s)	404
Eam1105I	GACNNNNNGTC	1 cut(s)	514
EarI	CTCTTC	1 cut(s)	404
EciI	GGCGGA	3 cut(s)	211, 220, 239
Eco130I	CCWWGG	4 cut(s)	277, 428, 564, 698
Eco47I	GGWCC	1 cut(s)	889
Eco57I	CTGAAG	1 cut(s)	768
Eco72I	CACGTG	2 cut(s)	596, 988
Eco88I	CYCGRG	1 cut(s)	413
EcoT14I	CCWWGG	4 cut(s)	277, 428, 564, 698
ErhI	CCWWGG	4 cut(s)	277, 428, 564, 698
Esp3I	CGTCTC	2 cut(s)	232, 662
FaeI	CATG	3 cut(s)	432, 568, 734
FalI	AAGNNNNNCTT	2 cut(s)	95, 127
FaqI	GGGAC	3 cut(s)	875, 1073, 1118
FatI	CATG	3 cut(s)	428, 564, 730
FauNDI	CATATG	1 cut(s)	98
FbaI	TGATCA	2 cut(s)	357, 552
Fnu4HI	GCNGC	2 cut(s)	132, 135
FokI	GGATG	2 cut(s)	168, 691
Fsp4HI	GCNGC	2 cut(s)	132, 135
FspBI	CTAG	2 cut(s)	92, 206
GlaI	GCGC	2 cut(s)	525, 584
GluI	GCNGC	2 cut(s)	132, 135
HaeIII	GGCC	1 cut(s)	563
HapII	CCGG	3 cut(s)	461, 603, 800
HgaI	GACGC	1 cut(s)	818
HhaI	GCGC	2 cut(s)	526, 585
Hin1I	GRCGYC	1 cut(s)	810
Hin1II	CATG	3 cut(s)	432, 568, 734
Hin6I	GCGC	2 cut(s)	524, 583
HinP1I	GCGC	2 cut(s)	524, 583
HincII	GTYRAC	2 cut(s)	466, 646
HindII	GTYRAC	2 cut(s)	466, 646
HindIII	AAGCTT	1 cut(s)	84
HinfI	GANTC	4 cut(s)	282, 791, 923, 1123
HpaII	CCGG	3 cut(s)	461, 603, 800
HphI	GGTGA	2 cut(s)	940, 1021
Hpy166II	GTNNAC	5 cut(s)	274, 466, 499, 646, 961
Hpy188I	TCNGA	4 cut(s)	10, 905, 935, 1122
Hpy188III	TCNNGA	2 cut(s)	92, 413
Hpy8I	GTNNAC	5 cut(s)	274, 466, 499, 646, 961
Hpy99I	CGWCG	1 cut(s)	812
HpyAV	CCTTC	3 cut(s)	195, 547, 682
HpyCH4III	ACNGT	4 cut(s)	470, 486, 503, 761
HpyCH4IV	ACGT	6 cut(s)	327, 367, 510, 595, 648, 987
HpyCH4V	TGCA	7 cut(s)	122, 137, 494, 499, 578, 858, 879
HpyF10VI	GCNNNNNNNGC	7 cut(s)	128, 143, 230, 575, 589, 809, 1085
HpyF3I	CTNAG	4 cut(s)	17, 440, 445, 542
HpySE526I	ACGT	6 cut(s)	327, 367, 510, 595, 648, 987
Hsp92I	GRCGYC	1 cut(s)	810
Hsp92II	CATG	3 cut(s)	432, 568, 734
HspAI	GCGC	2 cut(s)	524, 583
Ksp22I	TGATCA	2 cut(s)	357, 552
Kzo9I	GATC	7 cut(s)	10, 151, 357, 552, 702, 721, 930
LmnI	GCTCC	3 cut(s)	391, 430, 605
LpnPI	CCDG	9 cut(s)	177, 306, 368, 474, 512, 616, 813, 1017, 1065
Lsp1109I	GCAGC	2 cut(s)	121, 143
LweI	GCATC	6 cut(s)	253, 408, 481, 565, 669, 987
MaeI	CTAG	2 cut(s)	92, 206
MaeII	ACGT	6 cut(s)	327, 367, 510, 595, 648, 987
MaeIII	GTNAC	4 cut(s)	199, 611, 631, 831
MalI	GATC	7 cut(s)	12, 153, 359, 554, 704, 723, 932
MboI	GATC	7 cut(s)	10, 151, 357, 552, 702, 721, 930
MboII	GAAGA	7 cut(s)	59, 86, 180, 391, 447, 716, 883
MhlI	GDGCHC	2 cut(s)	501, 987
MluCI	AATT	2 cut(s)	23, 874
MlyI	GAGTC	1 cut(s)	1132
MseI	TTAA	6 cut(s)	156, 288, 330, 714, 1071, 1147
MspA1I	CMGCKG	1 cut(s)	134
MspI	CCGG	3 cut(s)	461, 603, 800
MvnI	CGCG	3 cut(s)	524, 585, 1136
MwoI	GCNNNNNNNGC	7 cut(s)	128, 143, 230, 575, 589, 809, 1085
NcoI	CCATGG	2 cut(s)	428, 564
NdeI	CATATG	1 cut(s)	98
NdeII	GATC	7 cut(s)	10, 151, 357, 552, 702, 721, 930
NlaIII	CATG	3 cut(s)	432, 568, 734
NlaIV	GGNNCC	3 cut(s)	387, 591, 891
NmuCI	GTSAC	2 cut(s)	611, 631
NspV	TTCGAA	1 cut(s)	402
PcsI	WCGNNNNNNNCGW	2 cut(s)	507, 668
PfeI	GAWTC	3 cut(s)	282, 791, 923
PkrI	GCNGC	2 cut(s)	133, 136
PleI	GAGTC	1 cut(s)	1131
PmaCI	CACGTG	2 cut(s)	596, 988
PmlI	CACGTG	2 cut(s)	596, 988
PpsI	GAGTC	1 cut(s)	1131
Ppu21I	YACGTR	2 cut(s)	596, 988
PsiI	TTATAA	1 cut(s)	1130
PspCI	CACGTG	2 cut(s)	596, 988
PspN4I	GGNNCC	3 cut(s)	387, 591, 891
PspPI	GGNCC	1 cut(s)	889
PvuII	CAGCTG	1 cut(s)	134
RsaI	GTAC	2 cut(s)	273, 661
RsaNI	GTAC	2 cut(s)	272, 660
SaqAI	TTAA	6 cut(s)	156, 288, 330, 714, 1071, 1147
SatI	GCNGC	2 cut(s)	132, 135
Sau3AI	GATC	7 cut(s)	10, 151, 357, 552, 702, 721, 930
Sau96I	GGNCC	1 cut(s)	889
SchI	GAGTC	1 cut(s)	1132
SduI	GDGCHC	2 cut(s)	501, 987
SfaNI	GCATC	6 cut(s)	253, 408, 481, 565, 669, 987
SfcI	CTRYAG	1 cut(s)	318
SfuI	TTCGAA	1 cut(s)	402
SinI	GGWCC	1 cut(s)	889
Sse9I	AATT	2 cut(s)	23, 874
SsiI	CCGC	4 cut(s)	222, 231, 250, 887
SspMI	CTAG	2 cut(s)	92, 206
StyI	CCWWGG	4 cut(s)	277, 428, 564, 698
TaaI	ACNGT	4 cut(s)	470, 486, 503, 761
TaiI	ACGT	6 cut(s)	330, 370, 513, 598, 651, 990
TaqI	TCGA	2 cut(s)	402, 1090
TaqII	GACCGA	1 cut(s)	1131
TasI	AATT	2 cut(s)	23, 874
TatI	WGTACW	1 cut(s)	271
TfiI	GAWTC	3 cut(s)	282, 791, 923
Tru1I	TTAA	6 cut(s)	156, 288, 330, 714, 1071, 1147
Tru9I	TTAA	6 cut(s)	156, 288, 330, 714, 1071, 1147
TscAI	CASTG	1 cut(s)	501
TseFI	GTSAC	2 cut(s)	611, 631
TseI	GCWGC	2 cut(s)	131, 134
Tsp45I	GTSAC	2 cut(s)	611, 631
TspDTI	ATGAA	3 cut(s)	87, 808, 987
TspGWI	ACGGA	1 cut(s)	1057
TspRI	CASTG	1 cut(s)	501
VneI	GTGCAC	1 cut(s)	497
VpaK11BI	GGWCC	1 cut(s)	889
XapI	RAATTY	1 cut(s)	23
XbaI	TCTAGA	1 cut(s)	91
XspI	CTAG	2 cut(s)	92, 206

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.