Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0002826

Physical Location & Seq

Genomic Coordinates Forward (+)

28787491 .. 28788833

Gene Structure 1343 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00189010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

ATGGAACATAGACAAAGGGCGCTAACATTGGAACAGAAAGAAGAGGAACAAGCCAGGGTGGAAGTGTGGAAATATGTGTTCGGGTTTTCAAAAATCGCAGTGGTGAAGTGTGCCATTGAGCTTGGAATAGCTGATGCTATTGAAAGCCATGGAAGCCCCATGACACTCTTAGAGCTATCCACTACTCTTAAGTGTGATCCTTCTTCCCTTTACCGCATCATGAGGTTCCTAGTTCACCACCAGATATTCAAAGAAGTCCAACCCAAAATCCCATCAGGCCCCAAAAGTTATGCACAAACACCTTTGTCCCGCTGCCTACTAAAATCCAGTCAAAATAGCATGGCTGCATTGATTTTGCTGGAGAGTAGTCCCGTAATGCTAGCACCATGGCATGGCCTTAGTGCCCGTCTTCTAGGAAATGGCACCAGTACACCCGCATTTGAGGCAGTACATGGTGAGGATGTATGGAGCTTTGCAGCAGCTAATCCCGGTCACAGCGAGCTTATCAATGAAGCAATGGCTTGTGATGCAAACTTGGCACTACCTGCACTGATTGAGAGTTGTTTAGAGGTTTTCAATGGGATTGAGACCATAATAGATGTGGGTGGTGGTAATGGAACTACTTTAGGCTTGTTGGTTAAGGCCTGTCCTTGGATTGTTCGAGGGATCAATTTTGATCTTCCTCATGTTGTATCTGTTGCTGAGGAGAATGATCGAGTAGAGAATGTTGGAGGTGACATGTTTGATTGTATTCCAAAGGCCGATGCTGCAATTTTCAAGTGGGTTCTTCATGATTGGGGAGATGAGGAGTGCATCCGTATACTGAAGAAATGTAAGGAAGCAATTCCTGAGGACAAAGGGAAGGTGATAATTCTGGAAGCTGTTATTGAAGAAGATGAGATCAAGGACGAGCTAACCGATGTGAGATTGATGCTAGACATGGTGATGATGGCTCATACTAGCACTGGCAAAGAGAGGACCTTGAAGGAATGGGGATATGTTCTTGGGGAAGCTGGCTTTAGCCGGCACACGGTCACACCTATTAATGCTGTCCAATCTGTTATCCAGGCTTTTCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0008757 GO:0009058 GO:0009987 GO:0010817 GO:0016740 GO:0016741 GO:0017096 GO:0017144 GO:0018130 GO:0019438 GO:0030186 GO:0030187 GO:0032259 GO:0034641 GO:0034754 GO:0042430 GO:0042435 GO:0042445 GO:0042446 GO:0043603 GO:0043604 GO:0044237 GO:0044249 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0065007 GO:0065008 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dimerisation Methyltransf_2

Protein Analysis

359

Amino Acids

39.55

Weight (kDa)

5.11

Isoelectric Point (pI)

38.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dimerisation	PF08100	23 - 109	1e-20	O-methyltransferase dimerisation domain
Methyltransf_2	PF00891	133 - 341	1.9e-46	O-methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002826)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35150 AT4G35160
fragaria_vesca	FvH4_2g15840 FvH4_2g15880 FvH4_2g15880
malus_domestica	MD05G1127400.v1.1 MD05G1127600.v1.1 MD05G1127900.v1.1 MD05G1128000.v1.1 MD05G1128100.v1.1
prunus_persica	Prupe.8G171000_v2.0.a1 Prupe.8G171100_v2.0.a1 Prupe.8G171400_v2.0.a1 Prupe.8G171900_v2.0.a1 Prupe.8G172000_v2.0.a1
pyrus_communis	pycom05g12360 pycom05g12370 pycom05g12400
rosa_chinensis	RchiOBHm_Chr6g0279261 RchiOBHm_Chr6g0279331 RchiOBHm_Chr6g0279441
rosa_laevigata	RLG00000013151 RLG00000013152
rosa_multiflora	Rmu_sc0009584.1_g000002 Rmu_sc0026652.1_g000001
rosa_roxburghii	Rroxscaffold_7G00188960 Rroxscaffold_7G00188980 Rroxscaffold_7G00189010
rosa_rugosa	Rorug06G0124200 Rorug06G0124200
rosa_samantha	Rh6AG232600 Rh6AG232800 Rh6AG233200 Rh6BG237200 Rh6BG237500 Rh6CG239300 Rh6CG239700
rosa_wichuraiana	Rw6G020330 Rw6G020360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	553
AccB1I	GGYRCC	1 cut(s)	422
AccB7I	CCANNNNNTGG	1 cut(s)	392
AccI	GTMKAC	1 cut(s)	820
AciI	CCGC	3 cut(s)	214, 310, 435
AclWI	GGATC	2 cut(s)	191, 674
AcuI	CTGAAG	1 cut(s)	845
AfaI	GTAC	2 cut(s)	430, 450
AfiI	CCNNNNNNNGG	3 cut(s)	392, 651, 1030
AflII	CTTAAG	1 cut(s)	188
AflIII	ACRYGT	1 cut(s)	738
AgsI	TTSAA	7 cut(s)	90, 143, 250, 577, 778, 890, 985
AjnI	CCWGG	2 cut(s)	53, 1065
AluBI	AGCT	9 cut(s)	121, 131, 175, 471, 482, 502, 881, 913, 1013
AluI	AGCT	9 cut(s)	121, 131, 175, 471, 482, 502, 881, 913, 1013
Alw26I	GTCTC	1 cut(s)	581
AlwI	GGATC	2 cut(s)	191, 674
AoxI	GGCC	4 cut(s)	277, 394, 642, 759
ApeKI	GCWGC	5 cut(s)	312, 344, 476, 479, 767
AseI	ATTAAT	1 cut(s)	1044
Asp700I	GAANNNNTTC	1 cut(s)	843
AspLEI	GCGC	1 cut(s)	22
AspS9I	GGNCC	2 cut(s)	278, 978
AsuC2I	CCSGG	1 cut(s)	489
AsuHPI	GGTGA	6 cut(s)	115, 227, 467, 746, 877, 955
AsuNHI	GCTAGC	1 cut(s)	379
AvaII	GGWCC	1 cut(s)	978
AxyI	CCTNAGG	1 cut(s)	849
BaeGI	GKGCMC	1 cut(s)	406
BanI	GGYRCC	1 cut(s)	422
BbsI	GAAGAC	1 cut(s)	401
BbvCI	CCTCAGC	1 cut(s)	702
BbvI	GCAGC	5 cut(s)	299, 331, 488, 491, 754
BccI	CCATC	2 cut(s)	280, 943
BciT130I	CCWGG	2 cut(s)	55, 1067
BcnI	CCSGG	1 cut(s)	489
BcoDI	GTCTC	1 cut(s)	581
BfaI	CTAG	5 cut(s)	230, 380, 413, 935, 960
BfoI	RGCGCY	1 cut(s)	23
BfrI	CTTAAG	1 cut(s)	188
BfuAI	ACCTGC	1 cut(s)	553
BisI	GCNGC	5 cut(s)	313, 345, 477, 480, 768
BlsI	GCNGC	5 cut(s)	314, 346, 478, 481, 769
Bme1390I	CCNGG	3 cut(s)	55, 489, 1067
Bme18I	GGWCC	1 cut(s)	978
BmgT120I	GGNCC	2 cut(s)	278, 978
BmiI	GGNNCC	3 cut(s)	227, 280, 424
BmrFI	CCNGG	3 cut(s)	55, 489, 1067
BmsI	GCATC	6 cut(s)	124, 225, 517, 754, 822, 921
BmtI	GCTAGC	1 cut(s)	383
BpiI	GAAGAC	1 cut(s)	401
BpmI	CTGGAG	1 cut(s)	380
Bpu10I	CCTNAGC	1 cut(s)	702
BpuMI	CCSGG	1 cut(s)	489
BsaI	GGTCTC	1 cut(s)	581
BsaJI	CCNNGG	4 cut(s)	54, 148, 386, 650
Bsc4I	CCNNNNNNNGG	3 cut(s)	392, 651, 1030
Bse118I	RCCGGY	1 cut(s)	1023
Bse1I	ACTGG	3 cut(s)	327, 426, 970
Bse21I	CCTNAGG	1 cut(s)	849
Bse3DI	GCAATG	1 cut(s)	522
BseBI	CCWGG	2 cut(s)	55, 1067
BseDI	CCNNGG	4 cut(s)	54, 148, 386, 650
BseGI	GGATG	2 cut(s)	466, 813
BseLI	CCNNNNNNNGG	3 cut(s)	392, 651, 1030
BseMI	GCAATG	1 cut(s)	522
BseMII	CTCAG	2 cut(s)	693, 840
BseNI	ACTGG	3 cut(s)	327, 426, 970
BseRI	GAGGAG	2 cut(s)	719, 821
BseSI	GKGCMC	1 cut(s)	406
BseXI	GCAGC	5 cut(s)	299, 331, 488, 491, 754
BsgI	GTGCAG	1 cut(s)	531
BshFI	GGCC	4 cut(s)	279, 396, 644, 761
BshNI	GGYRCC	1 cut(s)	422
BsiSI	CCGG	2 cut(s)	489, 1024
BslFI	GGGAC	2 cut(s)	292, 354
BslI	CCNNNNNNNGG	3 cut(s)	392, 651, 1030
BsmAI	GTCTC	1 cut(s)	581
BsmFI	GGGAC	2 cut(s)	292, 354
BsnI	GGCC	4 cut(s)	279, 396, 644, 761
Bso31I	GGTCTC	1 cut(s)	581
Bsp1286I	GDGCHC	1 cut(s)	406
Bsp143I	GATC	5 cut(s)	196, 666, 676, 712, 900
Bsp19I	CCATGG	2 cut(s)	148, 386
BspACI	CCGC	3 cut(s)	214, 310, 435
BspANI	GGCC	4 cut(s)	279, 396, 644, 761
BspCNI	CTCAG	2 cut(s)	694, 841
BspHI	TCATGA	2 cut(s)	219, 790
BspLI	GGNNCC	3 cut(s)	227, 280, 424
BspMI	ACCTGC	1 cut(s)	553
BspOI	GCTAGC	1 cut(s)	383
BspPI	GGATC	2 cut(s)	191, 674
BspT107I	GGYRCC	1 cut(s)	422
BspTI	CTTAAG	1 cut(s)	188
BspTNI	GGTCTC	1 cut(s)	581
BsrDI	GCAATG	1 cut(s)	522
BsrFI	RCCGGY	1 cut(s)	1023
BsrI	ACTGG	3 cut(s)	327, 426, 970
BssAI	RCCGGY	1 cut(s)	1023
BssECI	CCNNGG	4 cut(s)	54, 148, 386, 650
BssMI	GATC	5 cut(s)	196, 666, 676, 712, 900
BssNAI	GTATAC	1 cut(s)	821
BssT1I	CCWWGG	3 cut(s)	148, 386, 650
Bst1107I	GTATAC	1 cut(s)	821
Bst2UI	CCWGG	2 cut(s)	55, 1067
Bst4CI	ACNGT	1 cut(s)	1033
Bst6I	CTCTTC	1 cut(s)	36
BstAFI	CTTAAG	1 cut(s)	188
BstAPI	GCANNNNNTGC	1 cut(s)	545
BstC8I	GCNNGC	4 cut(s)	381, 500, 1015, 1025
BstDEI	CTNAG	4 cut(s)	169, 398, 702, 849
BstDSI	CCRYGG	2 cut(s)	148, 386
BstF5I	GGATG	2 cut(s)	466, 813
BstH2I	RGCGCY	1 cut(s)	23
BstHHI	GCGC	1 cut(s)	22
BstKTI	GATC	5 cut(s)	199, 669, 679, 715, 903
BstMAI	GTCTC	1 cut(s)	581
BstMBI	GATC	5 cut(s)	196, 666, 676, 712, 900
BstMWI	GCNNNNNNNGC	6 cut(s)	153, 443, 527, 536, 545, 767
BstNI	CCWGG	2 cut(s)	55, 1067
BstNSI	RCATGY	1 cut(s)	742
BstSCI	CCNGG	3 cut(s)	53, 487, 1065
BstSLI	GKGCMC	1 cut(s)	406
BstV1I	GCAGC	5 cut(s)	299, 331, 488, 491, 754
BstV2I	GAAGAC	1 cut(s)	401
BstZ17I	GTATAC	1 cut(s)	821
Bsu36I	CCTNAGG	1 cut(s)	849
BsuRI	GGCC	4 cut(s)	279, 396, 644, 761
BtgI	CCRYGG	2 cut(s)	148, 386
BtsCI	GGATG	2 cut(s)	466, 813
BtsI	GCAGTG	1 cut(s)	105
BtsIMutI	CAGTG	3 cut(s)	105, 548, 963
BveI	ACCTGC	1 cut(s)	553
Cac8I	GCNNGC	4 cut(s)	381, 500, 1015, 1025
CciI	TCATGA	2 cut(s)	219, 790
CfoI	GCGC	1 cut(s)	22
Cfr10I	RCCGGY	1 cut(s)	1023
Cfr13I	GGNCC	2 cut(s)	278, 978
Csp6I	GTAC	2 cut(s)	429, 449
CviQI	GTAC	2 cut(s)	429, 449
DdeI	CTNAG	4 cut(s)	169, 398, 702, 849
DpnI	GATC	5 cut(s)	198, 668, 678, 714, 902
DpnII	GATC	5 cut(s)	196, 666, 676, 712, 900
Eam1104I	CTCTTC	1 cut(s)	36
EarI	CTCTTC	1 cut(s)	36
Eco130I	CCWWGG	3 cut(s)	148, 386, 650
Eco147I	AGGCCT	1 cut(s)	644
Eco31I	GGTCTC	1 cut(s)	581
Eco47I	GGWCC	1 cut(s)	978
Eco57I	CTGAAG	1 cut(s)	845
Eco81I	CCTNAGG	1 cut(s)	849
EcoO109I	RGGNCCY	2 cut(s)	278, 978
EcoRII	CCWGG	2 cut(s)	53, 1065
EcoT14I	CCWWGG	3 cut(s)	148, 386, 650
ErhI	CCWWGG	3 cut(s)	148, 386, 650
FaqI	GGGAC	2 cut(s)	292, 354
FauI	CCCGC	2 cut(s)	317, 442
FblI	GTMKAC	1 cut(s)	820
Fnu4HI	GCNGC	5 cut(s)	313, 345, 477, 480, 768
FokI	GGATG	2 cut(s)	473, 800
Fsp4HI	GCNGC	5 cut(s)	313, 345, 477, 480, 768
FspBI	CTAG	5 cut(s)	230, 380, 413, 935, 960
GlaI	GCGC	1 cut(s)	21
GluI	GCNGC	5 cut(s)	313, 345, 477, 480, 768
GsuI	CTGGAG	1 cut(s)	380
HaeII	RGCGCY	1 cut(s)	23
HaeIII	GGCC	4 cut(s)	279, 396, 644, 761
HapII	CCGG	2 cut(s)	489, 1024
HhaI	GCGC	1 cut(s)	22
Hin6I	GCGC	1 cut(s)	20
HinP1I	GCGC	1 cut(s)	20
HpaII	CCGG	2 cut(s)	489, 1024
HphI	GGTGA	6 cut(s)	115, 227, 467, 746, 877, 955
Hpy166II	GTNNAC	3 cut(s)	235, 431, 821
Hpy188III	TCNNGA	4 cut(s)	220, 791, 848, 875
Hpy8I	GTNNAC	3 cut(s)	235, 431, 821
HpyAV	CCTTC	3 cut(s)	210, 856, 979
HpyCH4III	ACNGT	1 cut(s)	1033
HpyCH4V	TGCA	7 cut(s)	293, 347, 476, 530, 548, 770, 813
HpyF10VI	GCNNNNNNNGC	6 cut(s)	153, 443, 527, 536, 545, 767
HpyF3I	CTNAG	4 cut(s)	169, 398, 702, 849
HspAI	GCGC	1 cut(s)	20
KroI	GCCGGC	1 cut(s)	1023
KroNI	GCCGGC	1 cut(s)	1025
Kzo9I	GATC	5 cut(s)	196, 666, 676, 712, 900
LmnI	GCTCC	1 cut(s)	468
Lsp1109I	GCAGC	5 cut(s)	299, 331, 488, 491, 754
LweI	GCATC	6 cut(s)	124, 225, 517, 754, 822, 921
MaeI	CTAG	5 cut(s)	230, 380, 413, 935, 960
MaeIII	GTNAC	3 cut(s)	491, 734, 1033
MalI	GATC	5 cut(s)	198, 668, 678, 714, 902
MboI	GATC	5 cut(s)	196, 666, 676, 712, 900
MboII	GAAGA	8 cut(s)	53, 195, 401, 671, 779, 838, 902, 905
MhlI	GDGCHC	1 cut(s)	406
MluCI	AATT	4 cut(s)	670, 771, 843, 870
MmeI	TCCRAC	2 cut(s)	283, 709
MroNI	GCCGGC	1 cut(s)	1023
MroXI	GAANNNNTTC	1 cut(s)	843
MseI	TTAA	3 cut(s)	189, 639, 1044
MslI	CAYNNNNRTG	1 cut(s)	944
MspA1I	CMGCKG	1 cut(s)	312
MspCI	CTTAAG	1 cut(s)	188
MspI	CCGG	2 cut(s)	489, 1024
MspR9I	CCNGG	3 cut(s)	55, 489, 1067
MvaI	CCWGG	2 cut(s)	55, 1067
MwoI	GCNNNNNNNGC	6 cut(s)	153, 443, 527, 536, 545, 767
NaeI	GCCGGC	1 cut(s)	1025
NciI	CCSGG	1 cut(s)	489
NcoI	CCATGG	2 cut(s)	148, 386
NdeII	GATC	5 cut(s)	196, 666, 676, 712, 900
NgoMIV	GCCGGC	1 cut(s)	1023
NheI	GCTAGC	1 cut(s)	379
NlaIV	GGNNCC	3 cut(s)	227, 280, 424
NmuCI	GTSAC	3 cut(s)	491, 734, 1033
NspI	RCATGY	1 cut(s)	742
PagI	TCATGA	2 cut(s)	219, 790
PceI	AGGCCT	1 cut(s)	644
PciI	ACATGT	1 cut(s)	738
PcsI	WCGNNNNNNNCGW	1 cut(s)	915
PdiI	GCCGGC	1 cut(s)	1025
PdmI	GAANNNNTTC	1 cut(s)	843
PflMI	CCANNNNNTGG	1 cut(s)	392
PkrI	GCNGC	5 cut(s)	314, 346, 478, 481, 769
PpuMI	RGGWCCY	1 cut(s)	978
PscI	ACATGT	1 cut(s)	738
PshBI	ATTAAT	1 cut(s)	1044
Psp5II	RGGWCCY	1 cut(s)	978
Psp6I	CCWGG	2 cut(s)	53, 1065
PspGI	CCWGG	2 cut(s)	53, 1065
PspN4I	GGNNCC	3 cut(s)	227, 280, 424
PspPI	GGNCC	2 cut(s)	278, 978
PspPPI	RGGWCCY	1 cut(s)	978
RsaI	GTAC	2 cut(s)	430, 450
RsaNI	GTAC	2 cut(s)	429, 449
RseI	CAYNNNNRTG	1 cut(s)	944
SaqAI	TTAA	3 cut(s)	189, 639, 1044
SatI	GCNGC	5 cut(s)	313, 345, 477, 480, 768
Sau3AI	GATC	5 cut(s)	196, 666, 676, 712, 900
Sau96I	GGNCC	2 cut(s)	278, 978
ScrFI	CCNGG	3 cut(s)	55, 489, 1067
SduI	GDGCHC	1 cut(s)	406
SfaNI	GCATC	6 cut(s)	124, 225, 517, 754, 822, 921
SinI	GGWCC	1 cut(s)	978
SmiMI	CAYNNNNRTG	1 cut(s)	944
SmlI	CTYRAG	1 cut(s)	188
SmoI	CTYRAG	1 cut(s)	188
Sse9I	AATT	4 cut(s)	670, 771, 843, 870
SseBI	AGGCCT	1 cut(s)	644
SsiI	CCGC	3 cut(s)	214, 310, 435
SspMI	CTAG	5 cut(s)	230, 380, 413, 935, 960
StuI	AGGCCT	1 cut(s)	644
StyD4I	CCNGG	3 cut(s)	53, 487, 1065
StyI	CCWWGG	3 cut(s)	148, 386, 650
TaaI	ACNGT	1 cut(s)	1033
TaqI	TCGA	2 cut(s)	661, 715
TasI	AATT	4 cut(s)	670, 771, 843, 870
TatI	WGTACW	2 cut(s)	428, 448
Tru1I	TTAA	3 cut(s)	189, 639, 1044
Tru9I	TTAA	3 cut(s)	189, 639, 1044
TscAI	CASTG	3 cut(s)	105, 555, 970
TseFI	GTSAC	3 cut(s)	491, 734, 1033
TseI	GCWGC	5 cut(s)	312, 344, 476, 479, 767
Tsp45I	GTSAC	3 cut(s)	491, 734, 1033
TspDTI	ATGAA	2 cut(s)	525, 779
TspGWI	ACGGA	1 cut(s)	806
TspRI	CASTG	3 cut(s)	105, 555, 970
Van91I	CCANNNNNTGG	1 cut(s)	392
Vha464I	CTTAAG	1 cut(s)	188
VpaK11BI	GGWCC	1 cut(s)	978
VspI	ATTAAT	1 cut(s)	1044
XceI	RCATGY	1 cut(s)	742
XcmI	CCANNNNNNNNNTGG	1 cut(s)	598
XmiI	GTMKAC	1 cut(s)	820
XmnI	GAANNNNTTC	1 cut(s)	843
XspI	CTAG	5 cut(s)	230, 380, 413, 935, 960

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.