Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0002826

Physical Location & Seq

Genomic Coordinates Reverse (-)

17572581 .. 17574451

Gene Structure 1871 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G172000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

ATGGAAGACAAACAAAGAGAGTTAGGAGGAGAAGAGAAAGAAGAAGAACATGCCAAAGTGGAAATCTGGAAATATGTGTTTGGGTTTGTCGAAATCGGGGTGGTAAAATGTGCCATTGAGCTTGGAATAGCTGATGCAATTGAAAGCCATGGCAGCCCCATGACACTCCTAGAGCTATCATCTGCTCTAAGATGTGATCCTTCTCCCCTTTACCGCATCATGAGGGTCCTAGTCCACCTCAAAATATTCAAAGAAAAACCAGCAACCCAATTAGGCCCCAAAGTTTATGCACAAACACCTTTGTCCAAACAGCTATTGAAATCCGGAGAAAACAGCATGGCTGCTTTAATTTTGCTAGGGAATAGCCCGGTAGTGCTAGCACCGTGGCATGGCCTAAGTGCTCGAATTCAAGGTATTAGCAATCCAGCATTTGAAGCAGAACGTGGAGAGGATATATGGAGCTATGCCGCGGCCAATCCTGATCACAGCAAGCTTTTCAATGAAGCAATGGCTTGTGATGCAAGGGTGGCTGTGCCTGCAGTGATTGAAAGTTGTTCAGAGGTGTTCAAAGGGATTGAGAAAATCGTAGATGTGGGCGGGGGTGATGGGACTACTTTGCGCTTGTTAATTGAGGCATGTCCTTGGATTCGAGGCATCAACTTTGATCTTCCTCATGTTGTGTCTGTTGCTCAGGAGTGTGACCGCATTGAGAATGTTGGAGGTGACATGTTTGATTTTGTTCCAAAGGCTGATGCTGTAATTATGAAGTGGGTTCTTCACAACTGGGGAGATGATGAGTGCATCCGTATCCTTAAGAAGTGCAGGGAAGCTATTCCGGCGGATAAAGGGAAGGTGATAATTGTAGAAGCGGTTATCGATGAAAAAGATGAGAAAGAGGACATCAAACTAACAAATGTGAGATTGATGCTAGACATGGCGATGATGGCCGCTACACAAATAGGAAAAGAAAGGACCTTGAAGGAATGGGGATATGTTCTTGCGGACGCTGGCTTTAGCCAACACACTATCACACCTATTCATGCTGTCCAATCCGTTATTCAGGCTTTTCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0008757 GO:0009058 GO:0009987 GO:0010817 GO:0016740 GO:0016741 GO:0017096 GO:0017144 GO:0018130 GO:0019438 GO:0030186 GO:0030187 GO:0032259 GO:0034641 GO:0034754 GO:0042430 GO:0042435 GO:0042445 GO:0042446 GO:0043603 GO:0043604 GO:0044237 GO:0044249 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0065007 GO:0065008 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dimerisation Methyltransf_2

Protein Analysis

358

Amino Acids

39.41

Weight (kDa)

5.2

Isoelectric Point (pI)

38.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002826)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35150 AT4G35160
fragaria_vesca	FvH4_2g15840 FvH4_2g15880 FvH4_2g15880
malus_domestica	MD05G1127400.v1.1 MD05G1127600.v1.1 MD05G1127900.v1.1 MD05G1128000.v1.1 MD05G1128100.v1.1
prunus_persica	Prupe.8G171000_v2.0.a1 Prupe.8G171100_v2.0.a1 Prupe.8G171400_v2.0.a1 Prupe.8G171900_v2.0.a1 Prupe.8G172000_v2.0.a1
pyrus_communis	pycom05g12360 pycom05g12370 pycom05g12400
rosa_chinensis	RchiOBHm_Chr6g0279261 RchiOBHm_Chr6g0279331 RchiOBHm_Chr6g0279441
rosa_laevigata	RLG00000013151 RLG00000013152
rosa_multiflora	Rmu_sc0009584.1_g000002 Rmu_sc0026652.1_g000001
rosa_roxburghii	Rroxscaffold_7G00188960 Rroxscaffold_7G00188980 Rroxscaffold_7G00189010
rosa_rugosa	Rorug06G0124200 Rorug06G0124200
rosa_samantha	Rh6AG232600 Rh6AG232800 Rh6AG233200 Rh6BG237200 Rh6BG237500 Rh6CG239300 Rh6CG239700
rosa_wichuraiana	Rw6G020330 Rw6G020360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	470
AccIII	TCCGGA	1 cut(s)	323
AciI	CCGC	9 cut(s)	214, 468, 470, 597, 703, 839, 869, 948, 1001
AclWI	GGATC	1 cut(s)	191
AcoI	YGGCCR	2 cut(s)	471, 945
AcsI	RAATTY	1 cut(s)	405
AfiI	CCNNNNNNNGG	1 cut(s)	389
AflII	CTTAAG	1 cut(s)	812
AflIII	ACRYGT	1 cut(s)	726
AgsI	TTSAA	9 cut(s)	143, 250, 319, 410, 434, 499, 548, 568, 979
AjuI	GAANNNNNNNTTGG	2 cut(s)	1041, 1073
AluBI	AGCT	7 cut(s)	121, 131, 175, 313, 462, 493, 830
AluI	AGCT	7 cut(s)	121, 131, 175, 313, 462, 493, 830
Alw21I	GWGCWC	1 cut(s)	403
AlwI	GGATC	1 cut(s)	191
Aor13HI	TCCGGA	1 cut(s)	323
AoxI	GGCC	4 cut(s)	274, 391, 471, 945
ApeKI	GCWGC	2 cut(s)	153, 341
ApoI	RAATTY	1 cut(s)	405
Asp700I	GAANNNNTTC	1 cut(s)	831
AspLEI	GCGC	1 cut(s)	621
AspS9I	GGNCC	3 cut(s)	226, 275, 972
AsuC2I	CCSGG	1 cut(s)	368
AsuHPI	GGTGA	3 cut(s)	614, 734, 865
AsuNHI	GCTAGC	1 cut(s)	376
AvaII	GGWCC	2 cut(s)	226, 972
BbsI	GAAGAC	1 cut(s)	12
Bbv12I	GWGCWC	1 cut(s)	403
BbvI	GCAGC	2 cut(s)	165, 328
BccI	CCATC	2 cut(s)	599, 937
BciVI	GTATCC	1 cut(s)	818
BclI	TGATCA	1 cut(s)	481
BcnI	CCSGG	1 cut(s)	368
BfaI	CTAG	5 cut(s)	170, 230, 356, 377, 929
BfmI	CTRYAG	1 cut(s)	537
BfrI	CTTAAG	1 cut(s)	812
BfuI	GTATCC	1 cut(s)	818
BisI	GCNGC	5 cut(s)	154, 342, 468, 471, 948
BlsI	GCNGC	5 cut(s)	155, 343, 469, 472, 949
Bme1390I	CCNGG	1 cut(s)	368
Bme18I	GGWCC	2 cut(s)	226, 972
BmgT120I	GGNCC	3 cut(s)	226, 275, 972
BmiI	GGNNCC	2 cut(s)	227, 277
BmrFI	CCNGG	1 cut(s)	368
BmrI	ACTGGG	1 cut(s)	793
BmsI	GCATC	7 cut(s)	124, 225, 508, 663, 742, 810, 915
BmtI	GCTAGC	1 cut(s)	380
BmuI	ACTGGG	1 cut(s)	793
BpiI	GAAGAC	1 cut(s)	12
Bpu10I	CCTNAGC	1 cut(s)	690
BpuMI	CCSGG	1 cut(s)	368
Bsa29I	ATCGAT	1 cut(s)	876
BsaJI	CCNNGG	4 cut(s)	148, 383, 468, 641
BsaWI	WCCGGW	1 cut(s)	323
Bsc4I	CCNNNNNNNGG	1 cut(s)	389
Bse1I	ACTGG	1 cut(s)	788
Bse3DI	GCAATG	1 cut(s)	513
BseAI	TCCGGA	1 cut(s)	323
BseCI	ATCGAT	1 cut(s)	876
BseDI	CCNNGG	4 cut(s)	148, 383, 468, 641
BseGI	GGATG	1 cut(s)	801
BseLI	CCNNNNNNNGG	1 cut(s)	389
BseMI	GCAATG	1 cut(s)	513
BseMII	CTCAG	1 cut(s)	704
BseNI	ACTGG	1 cut(s)	788
BseRI	GAGGAG	1 cut(s)	42
BseXI	GCAGC	2 cut(s)	165, 328
BsgI	GTGCAG	1 cut(s)	841
Bsh1236I	CGCG	1 cut(s)	470
BshFI	GGCC	4 cut(s)	276, 393, 473, 947
BshVI	ATCGAT	1 cut(s)	876
BsiHKAI	GWGCWC	1 cut(s)	403
BsiSI	CCGG	3 cut(s)	324, 368, 836
BslFI	GGGAC	1 cut(s)	622
BslI	CCNNNNNNNGG	1 cut(s)	389
BsmFI	GGGAC	1 cut(s)	622
BsnI	GGCC	4 cut(s)	276, 393, 473, 947
Bsp1286I	GDGCHC	1 cut(s)	403
Bsp13I	TCCGGA	1 cut(s)	323
Bsp143I	GATC	3 cut(s)	196, 481, 664
Bsp19I	CCATGG	1 cut(s)	148
BspACI	CCGC	9 cut(s)	214, 468, 470, 597, 703, 839, 869, 948, 1001
BspANI	GGCC	4 cut(s)	276, 393, 473, 947
BspCNI	CTCAG	1 cut(s)	703
BspDI	ATCGAT	1 cut(s)	876
BspEI	TCCGGA	1 cut(s)	323
BspFNI	CGCG	1 cut(s)	470
BspHI	TCATGA	1 cut(s)	219
BspLI	GGNNCC	2 cut(s)	227, 277
BspMAI	CTGCAG	1 cut(s)	541
BspOI	GCTAGC	1 cut(s)	380
BspPI	GGATC	1 cut(s)	191
BspTI	CTTAAG	1 cut(s)	812
BsrDI	GCAATG	1 cut(s)	513
BsrI	ACTGG	1 cut(s)	788
BssECI	CCNNGG	4 cut(s)	148, 383, 468, 641
BssMI	GATC	3 cut(s)	196, 481, 664
BssT1I	CCWWGG	2 cut(s)	148, 641
Bst4CI	ACNGT	1 cut(s)	384
Bst6I	CTCTTC	1 cut(s)	27
BstAFI	CTTAAG	1 cut(s)	812
BstC8I	GCNNGC	4 cut(s)	378, 491, 537, 1009
BstDEI	CTNAG	3 cut(s)	188, 395, 690
BstDSI	CCRYGG	3 cut(s)	148, 383, 468
BstF5I	GGATG	1 cut(s)	801
BstFNI	CGCG	1 cut(s)	470
BstHHI	GCGC	1 cut(s)	621
BstKTI	GATC	3 cut(s)	199, 484, 667
BstMBI	GATC	3 cut(s)	196, 481, 664
BstMWI	GCNNNNNNNGC	7 cut(s)	153, 434, 518, 527, 536, 836, 944
BstNSI	RCATGY	3 cut(s)	53, 639, 730
BstSCI	CCNGG	1 cut(s)	366
BstSFI	CTRYAG	1 cut(s)	537
BstUI	CGCG	1 cut(s)	470
BstV1I	GCAGC	2 cut(s)	165, 328
BstV2I	GAAGAC	1 cut(s)	12
Bsu15I	ATCGAT	1 cut(s)	876
BsuI	GTATCC	1 cut(s)	818
BsuRI	GGCC	4 cut(s)	276, 393, 473, 947
BsuTUI	ATCGAT	1 cut(s)	876
BtgI	CCRYGG	3 cut(s)	148, 383, 468
BtgZI	GCGATG	1 cut(s)	953
BtsCI	GGATG	1 cut(s)	801
BtsI	GCAGTG	1 cut(s)	546
BtsIMutI	CAGTG	1 cut(s)	546
Cac8I	GCNNGC	4 cut(s)	378, 491, 537, 1009
CciI	TCATGA	1 cut(s)	219
CfoI	GCGC	1 cut(s)	621
Cfr13I	GGNCC	3 cut(s)	226, 275, 972
Cfr42I	CCGCGG	1 cut(s)	471
ClaI	ATCGAT	1 cut(s)	876
CseI	GACGC	1 cut(s)	1013
DdeI	CTNAG	3 cut(s)	188, 395, 690
DpnI	GATC	3 cut(s)	198, 483, 666
DpnII	GATC	3 cut(s)	196, 481, 664
EaeI	YGGCCR	2 cut(s)	471, 945
Eam1104I	CTCTTC	1 cut(s)	27
EarI	CTCTTC	1 cut(s)	27
EciI	GGCGGA	1 cut(s)	854
Eco130I	CCWWGG	2 cut(s)	148, 641
Eco47I	GGWCC	2 cut(s)	226, 972
EcoO109I	RGGNCCY	3 cut(s)	226, 275, 972
EcoRI	GAATTC	1 cut(s)	405
EcoT14I	CCWWGG	2 cut(s)	148, 641
ErhI	CCWWGG	2 cut(s)	148, 641
FaqI	GGGAC	1 cut(s)	622
FauI	CCCGC	1 cut(s)	590
FbaI	TGATCA	1 cut(s)	481
Fnu4HI	GCNGC	5 cut(s)	154, 342, 468, 471, 948
FokI	GGATG	1 cut(s)	788
Fsp4HI	GCNGC	5 cut(s)	154, 342, 468, 471, 948
FspBI	CTAG	5 cut(s)	170, 230, 356, 377, 929
GlaI	GCGC	1 cut(s)	620
GluI	GCNGC	5 cut(s)	154, 342, 468, 471, 948
HaeIII	GGCC	4 cut(s)	276, 393, 473, 947
HapII	CCGG	3 cut(s)	324, 368, 836
HgaI	GACGC	1 cut(s)	1013
HhaI	GCGC	1 cut(s)	621
Hin6I	GCGC	1 cut(s)	619
HinP1I	GCGC	1 cut(s)	619
HindIII	AAGCTT	1 cut(s)	491
HinfI	GANTC	1 cut(s)	646
HpaII	CCGG	3 cut(s)	324, 368, 836
HphI	GGTGA	3 cut(s)	614, 734, 865
Hpy166II	GTNNAC	1 cut(s)	235
Hpy188I	TCNGA	1 cut(s)	559
Hpy188III	TCNNGA	5 cut(s)	67, 220, 324, 479, 692
Hpy8I	GTNNAC	1 cut(s)	235
HpyAV	CCTTC	3 cut(s)	210, 844, 973
HpyCH4III	ACNGT	1 cut(s)	384
HpyCH4IV	ACGT	1 cut(s)	442
HpyCH4V	TGCA	6 cut(s)	137, 290, 521, 539, 801, 822
HpyF10VI	GCNNNNNNNGC	7 cut(s)	153, 434, 518, 527, 536, 836, 944
HpyF3I	CTNAG	3 cut(s)	188, 395, 690
HpySE526I	ACGT	1 cut(s)	442
HspAI	GCGC	1 cut(s)	619
Kpn2I	TCCGGA	1 cut(s)	323
Ksp22I	TGATCA	1 cut(s)	481
KspI	CCGCGG	1 cut(s)	471
Kzo9I	GATC	3 cut(s)	196, 481, 664
LmnI	GCTCC	1 cut(s)	459
Lsp1109I	GCAGC	2 cut(s)	165, 328
LweI	GCATC	7 cut(s)	124, 225, 508, 663, 742, 810, 915
MaeI	CTAG	5 cut(s)	170, 230, 356, 377, 929
MaeII	ACGT	1 cut(s)	442
MaeIII	GTNAC	2 cut(s)	698, 722
MalI	GATC	3 cut(s)	198, 483, 666
MboI	GATC	3 cut(s)	196, 481, 664
MboII	GAAGA	6 cut(s)	17, 44, 53, 56, 659, 767
MfeI	CAATTG	1 cut(s)	138
MhlI	GDGCHC	1 cut(s)	403
MluCI	AATT	7 cut(s)	138, 269, 348, 405, 627, 759, 858
MmeI	TCCRAC	1 cut(s)	697
MroI	TCCGGA	1 cut(s)	323
MroXI	GAANNNNTTC	1 cut(s)	831
MseI	TTAA	4 cut(s)	347, 626, 813, 1072
MslI	CAYNNNNRTG	1 cut(s)	938
MspA1I	CMGCKG	1 cut(s)	470
MspCI	CTTAAG	1 cut(s)	812
MspI	CCGG	3 cut(s)	324, 368, 836
MspR9I	CCNGG	1 cut(s)	368
MunI	CAATTG	1 cut(s)	138
MvnI	CGCG	1 cut(s)	470
MwoI	GCNNNNNNNGC	7 cut(s)	153, 434, 518, 527, 536, 836, 944
NciI	CCSGG	1 cut(s)	368
NcoI	CCATGG	1 cut(s)	148
NdeII	GATC	3 cut(s)	196, 481, 664
NheI	GCTAGC	1 cut(s)	376
NlaIV	GGNNCC	2 cut(s)	227, 277
NmuCI	GTSAC	2 cut(s)	698, 722
NspI	RCATGY	3 cut(s)	53, 639, 730
PagI	TCATGA	1 cut(s)	219
PciI	ACATGT	1 cut(s)	726
PdmI	GAANNNNTTC	1 cut(s)	831
PfeI	GAWTC	1 cut(s)	646
PkrI	GCNGC	5 cut(s)	155, 343, 469, 472, 949
PpuMI	RGGWCCY	2 cut(s)	226, 972
PscI	ACATGT	1 cut(s)	726
Psp5II	RGGWCCY	2 cut(s)	226, 972
PspN4I	GGNNCC	2 cut(s)	227, 277
PspPI	GGNCC	3 cut(s)	226, 275, 972
PspPPI	RGGWCCY	2 cut(s)	226, 972
PstI	CTGCAG	1 cut(s)	541
RseI	CAYNNNNRTG	1 cut(s)	938
SacII	CCGCGG	1 cut(s)	471
SaqAI	TTAA	4 cut(s)	347, 626, 813, 1072
SatI	GCNGC	5 cut(s)	154, 342, 468, 471, 948
Sau3AI	GATC	3 cut(s)	196, 481, 664
Sau96I	GGNCC	3 cut(s)	226, 275, 972
ScrFI	CCNGG	1 cut(s)	368
SduI	GDGCHC	1 cut(s)	403
SfaNI	GCATC	7 cut(s)	124, 225, 508, 663, 742, 810, 915
SfcI	CTRYAG	1 cut(s)	537
Sfr303I	CCGCGG	1 cut(s)	471
SgrBI	CCGCGG	1 cut(s)	471
SinI	GGWCC	2 cut(s)	226, 972
SmiMI	CAYNNNNRTG	1 cut(s)	938
SmlI	CTYRAG	1 cut(s)	812
SmoI	CTYRAG	1 cut(s)	812
Sse9I	AATT	7 cut(s)	138, 269, 348, 405, 627, 759, 858
SsiI	CCGC	9 cut(s)	214, 468, 470, 597, 703, 839, 869, 948, 1001
SspI	AATATT	1 cut(s)	246
SspMI	CTAG	5 cut(s)	170, 230, 356, 377, 929
StyD4I	CCNGG	1 cut(s)	366
StyI	CCWWGG	2 cut(s)	148, 641
TaaI	ACNGT	1 cut(s)	384
TaiI	ACGT	1 cut(s)	445
TaqI	TCGA	4 cut(s)	90, 403, 649, 876
TasI	AATT	7 cut(s)	138, 269, 348, 405, 627, 759, 858
TauI	GCSGC	3 cut(s)	470, 473, 950
TfiI	GAWTC	1 cut(s)	646
Tru1I	TTAA	4 cut(s)	347, 626, 813, 1072
Tru9I	TTAA	4 cut(s)	347, 626, 813, 1072
TscAI	CASTG	1 cut(s)	546
TseFI	GTSAC	2 cut(s)	698, 722
TseI	GCWGC	2 cut(s)	153, 341
Tsp45I	GTSAC	2 cut(s)	698, 722
TspDTI	ATGAA	4 cut(s)	516, 779, 894, 1028
TspGWI	ACGGA	2 cut(s)	794, 1042
TspRI	CASTG	1 cut(s)	546
Vha464I	CTTAAG	1 cut(s)	812
VpaK11BI	GGWCC	2 cut(s)	226, 972
XapI	RAATTY	1 cut(s)	405
XceI	RCATGY	3 cut(s)	53, 639, 730
XmnI	GAANNNNTTC	1 cut(s)	831
XspI	CTAG	5 cut(s)	170, 230, 356, 377, 929

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.