Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0002826

Physical Location & Seq

Genomic Coordinates Reverse (-)

25082979 .. 25085211

Gene Structure 2233 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1127600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1083 bp

ATGGACACGCAGAGAGAAACGGAAGATACAAAAAGAGAGTTAACGTCGGAAGAAGAAGAAGAGCGTGCGAAAGTGGATATGTGGAAATATGTGTTCGGGTTTGTTGAAATCGCGGTGGTAAAATGTGCCATTGAACTCGGGATAGCCGATGCAATTGAAATCCATGGCAGCCCCATGACACTCTTAGAGCTCTCGTCTGCTCTAAGTTGTGATCCTTCTCACCTTTACCGCGTCATGAGGGTACTAGTCCACCTCAAAATATTCAAAGAAAAAACAACGGAATTAGGCCCCAAAGGTTATGCACAAACACCATTGTCCAAACGGCTATTAAAATCCGGAGAAAATAGCATGGCTGCGTTAATTTTGCTCGAGAGTAGCCCAGTAATGCTGGCACCGTGGCACGGCCTAAGTGCCCGACTTCGAGGAAATAGCAATCCGTCATTTGAGGCAGTGCATGGAGAAGATTTATGGAGCTTTGCTGCCGCCAATCCTGATCACAGCAAGCTCATCAATGATGCAATGGCTTGTGATGCAAGGGTGGCTGTGCCTGCAGTGATTGAAAGCTGTTTAGAAGTGTTCAAAGGGCTTGAGACAATAGTAGATGTGGGTGGTGGTGATGGGACTACGTTGCGCTTGTTGGTCGAGACTTGTCCGTGGATTCGAGGCATCAACTTTGATCGTCCTCATGTTGTGTCTGTTGCTCATGAGTGTGATCGGATTGAGAATGTCGGAGGTGACTTTTTTTATTGTGTTCCGAAGGCTGATGCTGCAATTATCATGTGGGTTCTTCACGATTGGGGAGACGACGACTGCATTCGTATCCTGAAGAAGTGCAGAGAAGCTATTCCGAACGATAAAGGGAAAGTTATAATCATAGAAGCTGTGATCGAAGAAGATGGAAAAGAAGACAACAAGCTAGCAGATGTGAGATTGATGCTAGACATGGTGATGCTGGCCCATACAAACACAGGCAAAGAGAGGACCTTTAAGGAATGGGGATATGTTCTTGGAGAGGCTGGATTTAGCCGATACACAATCACACCTATTCATGCAGTCCAATCAGTGATTCAAGCTTTTCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0008757 GO:0009058 GO:0009987 GO:0010817 GO:0016740 GO:0016741 GO:0017096 GO:0017144 GO:0018130 GO:0019438 GO:0030186 GO:0030187 GO:0032259 GO:0034641 GO:0034754 GO:0042430 GO:0042435 GO:0042445 GO:0042446 GO:0043603 GO:0043604 GO:0044237 GO:0044249 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0065007 GO:0065008 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dimerisation Methyltransf_2

Protein Analysis

361

Amino Acids

40.02

Weight (kDa)

5.13

Isoelectric Point (pI)

37.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dimerisation	PF08100	28 - 112	3.5e-21	O-methyltransferase dimerisation domain
Methyltransf_2	PF00891	133 - 342	1.3e-47	O-methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002826)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35150 AT4G35160
fragaria_vesca	FvH4_2g15840 FvH4_2g15880 FvH4_2g15880
malus_domestica	MD05G1127400.v1.1 MD05G1127600.v1.1 MD05G1127900.v1.1 MD05G1128000.v1.1 MD05G1128100.v1.1
prunus_persica	Prupe.8G171000_v2.0.a1 Prupe.8G171100_v2.0.a1 Prupe.8G171400_v2.0.a1 Prupe.8G171900_v2.0.a1 Prupe.8G172000_v2.0.a1
pyrus_communis	pycom05g12360 pycom05g12370 pycom05g12400
rosa_chinensis	RchiOBHm_Chr6g0279261 RchiOBHm_Chr6g0279331 RchiOBHm_Chr6g0279441
rosa_laevigata	RLG00000013151 RLG00000013152
rosa_multiflora	Rmu_sc0009584.1_g000002 Rmu_sc0026652.1_g000001
rosa_roxburghii	Rroxscaffold_7G00188960 Rroxscaffold_7G00188980 Rroxscaffold_7G00189010
rosa_rugosa	Rorug06G0124200 Rorug06G0124200
rosa_samantha	Rh6AG232600 Rh6AG232800 Rh6AG233200 Rh6BG237200 Rh6BG237500 Rh6CG239300 Rh6CG239700
rosa_wichuraiana	Rw6G020330 Rw6G020360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	869
AccB1I	GGYRCC	1 cut(s)	391
AccII	CGCG	2 cut(s)	113, 231
AccIII	TCCGGA	1 cut(s)	335
AciI	CCGC	3 cut(s)	113, 229, 483
AclWI	GGATC	1 cut(s)	206
AcuI	CTGAAG	1 cut(s)	845
AfaI	GTAC	1 cut(s)	243
AfiI	CCNNNNNNNGG	1 cut(s)	401
AgsI	TTSAA	7 cut(s)	107, 134, 158, 265, 560, 580, 1070
AhlI	ACTAGT	1 cut(s)	244
AjuI	GAANNNNNNNTTGG	2 cut(s)	1050, 1082
AluBI	AGCT	8 cut(s)	190, 474, 505, 564, 842, 881, 916, 1073
AluI	AGCT	8 cut(s)	190, 474, 505, 564, 842, 881, 916, 1073
Alw21I	GWGCWC	1 cut(s)	192
Alw26I	GTCTC	3 cut(s)	584, 638, 795
AlwI	GGATC	1 cut(s)	206
Ama87I	CYCGRG	2 cut(s)	137, 368
Aor13HI	TCCGGA	1 cut(s)	335
AoxI	GGCC	3 cut(s)	286, 403, 954
ApeKI	GCWGC	4 cut(s)	168, 353, 479, 767
Asp700I	GAANNNNTTC	1 cut(s)	843
AspLEI	GCGC	1 cut(s)	633
AspS9I	GGNCC	3 cut(s)	287, 955, 981
AsuHPI	GGTGA	4 cut(s)	212, 626, 746, 958
AsuNHI	GCTAGC	1 cut(s)	916
AvaI	CYCGRG	2 cut(s)	137, 368
AvaII	GGWCC	1 cut(s)	981
BaeGI	GKGCMC	1 cut(s)	415
BanI	GGYRCC	1 cut(s)	391
BanII	GRGCYC	1 cut(s)	192
BbsI	GAAGAC	1 cut(s)	912
Bbv12I	GWGCWC	1 cut(s)	192
BbvI	GCAGC	4 cut(s)	180, 340, 466, 754
BccI	CCATC	2 cut(s)	611, 890
BceAI	ACGGC	2 cut(s)	338, 418
BciVI	GTATCC	1 cut(s)	830
BclI	TGATCA	1 cut(s)	493
BcoDI	GTCTC	3 cut(s)	584, 638, 795
BcuI	ACTAGT	1 cut(s)	244
BfaI	CTAG	3 cut(s)	245, 917, 938
BfmI	CTRYAG	1 cut(s)	549
BfuI	GTATCC	1 cut(s)	830
BisI	GCNGC	5 cut(s)	169, 354, 480, 483, 768
BlsI	GCNGC	5 cut(s)	170, 355, 481, 484, 769
Bme18I	GGWCC	1 cut(s)	981
BmeT110I	CYCGRG	2 cut(s)	137, 368
BmgT120I	GGNCC	3 cut(s)	287, 955, 981
BmiI	GGNNCC	2 cut(s)	289, 393
BmrI	ACTGGG	1 cut(s)	374
BmsI	GCATC	7 cut(s)	139, 505, 520, 675, 754, 924, 939
BmtI	GCTAGC	1 cut(s)	920
BmuI	ACTGGG	1 cut(s)	374
BpiI	GAAGAC	1 cut(s)	912
BpuEI	CTTGAG	1 cut(s)	608
BsaJI	CCNNGG	3 cut(s)	163, 395, 653
BsaWI	WCCGGW	1 cut(s)	335
Bsc4I	CCNNNNNNNGG	1 cut(s)	401
Bse1I	ACTGG	1 cut(s)	380
Bse3DI	GCAATG	1 cut(s)	525
BseAI	TCCGGA	1 cut(s)	335
BseDI	CCNNGG	3 cut(s)	163, 395, 653
BseLI	CCNNNNNNNGG	1 cut(s)	401
BseMI	GCAATG	1 cut(s)	525
BseNI	ACTGG	1 cut(s)	380
BseSI	GKGCMC	1 cut(s)	415
BseXI	GCAGC	4 cut(s)	180, 340, 466, 754
BsgI	GTGCAG	1 cut(s)	853
Bsh1236I	CGCG	2 cut(s)	113, 231
BshFI	GGCC	3 cut(s)	288, 405, 956
BshNI	GGYRCC	1 cut(s)	391
BsiHKAI	GWGCWC	1 cut(s)	192
BsiHKCI	CYCGRG	2 cut(s)	137, 368
BsiSI	CCGG	1 cut(s)	336
BslFI	GGGAC	1 cut(s)	634
BslI	CCNNNNNNNGG	1 cut(s)	401
BsmAI	GTCTC	3 cut(s)	584, 638, 795
BsmBI	CGTCTC	1 cut(s)	795
BsmFI	GGGAC	1 cut(s)	634
BsmI	GAATGC	1 cut(s)	813
BsnI	GGCC	3 cut(s)	288, 405, 956
BsoBI	CYCGRG	2 cut(s)	137, 368
Bsp1286I	GDGCHC	2 cut(s)	192, 415
Bsp13I	TCCGGA	1 cut(s)	335
Bsp143I	GATC	5 cut(s)	211, 493, 676, 712, 885
Bsp19I	CCATGG	1 cut(s)	163
BspACI	CCGC	3 cut(s)	113, 229, 483
BspANI	GGCC	3 cut(s)	288, 405, 956
BspEI	TCCGGA	1 cut(s)	335
BspFNI	CGCG	2 cut(s)	113, 231
BspHI	TCATGA	2 cut(s)	234, 703
BspLI	GGNNCC	2 cut(s)	289, 393
BspMAI	CTGCAG	1 cut(s)	553
BspOI	GCTAGC	1 cut(s)	920
BspPI	GGATC	1 cut(s)	206
BspQI	GCTCTTC	1 cut(s)	54
BspT107I	GGYRCC	1 cut(s)	391
BsrDI	GCAATG	1 cut(s)	525
BsrI	ACTGG	1 cut(s)	380
BssECI	CCNNGG	3 cut(s)	163, 395, 653
BssMI	GATC	5 cut(s)	211, 493, 676, 712, 885
BssT1I	CCWWGG	1 cut(s)	163
Bst4CI	ACNGT	1 cut(s)	396
Bst6I	CTCTTC	1 cut(s)	54
BstC8I	GCNNGC	6 cut(s)	66, 390, 503, 549, 918, 954
BstDEI	CTNAG	3 cut(s)	184, 203, 407
BstDSI	CCRYGG	3 cut(s)	163, 395, 653
BstFNI	CGCG	2 cut(s)	113, 231
BstHHI	GCGC	1 cut(s)	633
BstKTI	GATC	5 cut(s)	214, 496, 679, 715, 888
BstMAI	GTCTC	3 cut(s)	584, 638, 795
BstMBI	GATC	5 cut(s)	211, 493, 676, 712, 885
BstMWI	GCNNNNNNNGC	4 cut(s)	530, 539, 548, 767
BstSFI	CTRYAG	1 cut(s)	549
BstSLI	GKGCMC	1 cut(s)	415
BstUI	CGCG	2 cut(s)	113, 231
BstV1I	GCAGC	4 cut(s)	180, 340, 466, 754
BstV2I	GAAGAC	1 cut(s)	912
BsuI	GTATCC	1 cut(s)	830
BsuRI	GGCC	3 cut(s)	288, 405, 956
BtgI	CCRYGG	3 cut(s)	163, 395, 653
BtsI	GCAGTG	2 cut(s)	456, 558
BtsIMutI	CAGTG	3 cut(s)	456, 558, 1068
Cac8I	GCNNGC	6 cut(s)	66, 390, 503, 549, 918, 954
CciI	TCATGA	2 cut(s)	234, 703
CfoI	GCGC	1 cut(s)	633
Cfr13I	GGNCC	3 cut(s)	287, 955, 981
CseI	GACGC	1 cut(s)	220
Csp6I	GTAC	1 cut(s)	242
CviQI	GTAC	1 cut(s)	242
DdeI	CTNAG	3 cut(s)	184, 203, 407
DpnI	GATC	5 cut(s)	213, 495, 678, 714, 887
DpnII	GATC	5 cut(s)	211, 493, 676, 712, 885
Eam1104I	CTCTTC	1 cut(s)	54
EarI	CTCTTC	1 cut(s)	54
Ecl136II	GAGCTC	1 cut(s)	190
Eco130I	CCWWGG	1 cut(s)	163
Eco24I	GRGCYC	1 cut(s)	192
Eco47I	GGWCC	1 cut(s)	981
Eco53kI	GAGCTC	1 cut(s)	190
Eco57I	CTGAAG	1 cut(s)	845
Eco88I	CYCGRG	2 cut(s)	137, 368
EcoICRI	GAGCTC	1 cut(s)	190
EcoO109I	RGGNCCY	2 cut(s)	287, 981
EcoT14I	CCWWGG	1 cut(s)	163
EcoT38I	GRGCYC	1 cut(s)	192
ErhI	CCWWGG	1 cut(s)	163
Esp3I	CGTCTC	1 cut(s)	795
FaqI	GGGAC	1 cut(s)	634
FbaI	TGATCA	1 cut(s)	493
Fnu4HI	GCNGC	5 cut(s)	169, 354, 480, 483, 768
FriOI	GRGCYC	1 cut(s)	192
Fsp4HI	GCNGC	5 cut(s)	169, 354, 480, 483, 768
FspBI	CTAG	3 cut(s)	245, 917, 938
GlaI	GCGC	1 cut(s)	632
GluI	GCNGC	5 cut(s)	169, 354, 480, 483, 768
HaeIII	GGCC	3 cut(s)	288, 405, 956
HapII	CCGG	1 cut(s)	336
HgaI	GACGC	1 cut(s)	220
HhaI	GCGC	1 cut(s)	633
Hin6I	GCGC	1 cut(s)	631
HinP1I	GCGC	1 cut(s)	631
HincII	GTYRAC	1 cut(s)	42
HindII	GTYRAC	1 cut(s)	42
HindIII	AAGCTT	1 cut(s)	1071
HinfI	GANTC	2 cut(s)	658, 1066
HpaI	GTTAAC	1 cut(s)	42
HpaII	CCGG	1 cut(s)	336
HphI	GGTGA	4 cut(s)	212, 626, 746, 958
Hpy166II	GTNNAC	2 cut(s)	42, 250
Hpy188I	TCNGA	5 cut(s)	49, 717, 731, 756, 849
Hpy188III	TCNNGA	9 cut(s)	139, 235, 336, 370, 491, 643, 704, 791, 823
Hpy8I	GTNNAC	2 cut(s)	42, 250
Hpy99I	CGWCG	2 cut(s)	49, 809
HpyAV	CCTTC	2 cut(s)	225, 751
HpyCH4III	ACNGT	1 cut(s)	396
HpyCH4IV	ACGT	2 cut(s)	44, 626
HpyF10VI	GCNNNNNNNGC	4 cut(s)	530, 539, 548, 767
HpyF3I	CTNAG	3 cut(s)	184, 203, 407
HpySE526I	ACGT	2 cut(s)	44, 626
HspAI	GCGC	1 cut(s)	631
Kpn2I	TCCGGA	1 cut(s)	335
Ksp22I	TGATCA	1 cut(s)	493
KspAI	GTTAAC	1 cut(s)	42
Kzo9I	GATC	5 cut(s)	211, 493, 676, 712, 885
LguI	GCTCTTC	1 cut(s)	54
LmnI	GCTCC	1 cut(s)	471
LpnPI	CCDG	9 cut(s)	349, 374, 393, 504, 561, 836, 938, 954, 1002
Lsp1109I	GCAGC	4 cut(s)	180, 340, 466, 754
LweI	GCATC	7 cut(s)	139, 505, 520, 675, 754, 924, 939
MaeI	CTAG	3 cut(s)	245, 917, 938
MaeII	ACGT	2 cut(s)	44, 626
MaeIII	GTNAC	1 cut(s)	734
MalI	GATC	5 cut(s)	213, 495, 678, 714, 887
MboI	GATC	5 cut(s)	211, 493, 676, 712, 885
MfeI	CAATTG	1 cut(s)	153
MhlI	GDGCHC	2 cut(s)	192, 415
MluCI	AATT	4 cut(s)	153, 281, 360, 771
MmeI	TCCRAC	2 cut(s)	27, 709
MnlI	CCTC	9 cut(s)	231, 263, 416, 439, 656, 693, 725, 972, 1006
MroI	TCCGGA	1 cut(s)	335
MroXI	GAANNNNTTC	1 cut(s)	843
MseI	TTAA	4 cut(s)	41, 329, 359, 987
MslI	CAYNNNNRTG	2 cut(s)	708, 947
MspI	CCGG	1 cut(s)	336
MunI	CAATTG	1 cut(s)	153
Mva1269I	GAATGC	1 cut(s)	813
MvnI	CGCG	2 cut(s)	113, 231
MwoI	GCNNNNNNNGC	4 cut(s)	530, 539, 548, 767
NcoI	CCATGG	1 cut(s)	163
NdeII	GATC	5 cut(s)	211, 493, 676, 712, 885
NheI	GCTAGC	1 cut(s)	916
NlaIV	GGNNCC	2 cut(s)	289, 393
NmuCI	GTSAC	1 cut(s)	734
PaeR7I	CTCGAG	1 cut(s)	368
PagI	TCATGA	2 cut(s)	234, 703
PciSI	GCTCTTC	1 cut(s)	54
PcsI	WCGNNNNNNNCGW	1 cut(s)	144
PctI	GAATGC	1 cut(s)	813
PdmI	GAANNNNTTC	1 cut(s)	843
PfeI	GAWTC	2 cut(s)	658, 1066
PkrI	GCNGC	5 cut(s)	170, 355, 481, 484, 769
PpuMI	RGGWCCY	1 cut(s)	981
PsiI	TTATAA	1 cut(s)	869
Psp124BI	GAGCTC	1 cut(s)	192
Psp5II	RGGWCCY	1 cut(s)	981
PspN4I	GGNNCC	2 cut(s)	289, 393
PspPI	GGNCC	3 cut(s)	287, 955, 981
PspPPI	RGGWCCY	1 cut(s)	981
PstI	CTGCAG	1 cut(s)	553
RsaI	GTAC	1 cut(s)	243
RsaNI	GTAC	1 cut(s)	242
RseI	CAYNNNNRTG	2 cut(s)	708, 947
SacI	GAGCTC	1 cut(s)	192
SapI	GCTCTTC	1 cut(s)	54
SaqAI	TTAA	4 cut(s)	41, 329, 359, 987
SatI	GCNGC	5 cut(s)	169, 354, 480, 483, 768
Sau3AI	GATC	5 cut(s)	211, 493, 676, 712, 885
Sau96I	GGNCC	3 cut(s)	287, 955, 981
SduI	GDGCHC	2 cut(s)	192, 415
SfaNI	GCATC	7 cut(s)	139, 505, 520, 675, 754, 924, 939
SfcI	CTRYAG	1 cut(s)	549
Sfr274I	CTCGAG	1 cut(s)	368
SinI	GGWCC	1 cut(s)	981
SlaI	CTCGAG	1 cut(s)	368
SmiMI	CAYNNNNRTG	2 cut(s)	708, 947
SmlI	CTYRAG	2 cut(s)	368, 587
SmoI	CTYRAG	2 cut(s)	368, 587
SpeI	ACTAGT	1 cut(s)	244
Sse9I	AATT	4 cut(s)	153, 281, 360, 771
SsiI	CCGC	3 cut(s)	113, 229, 483
SspI	AATATT	1 cut(s)	261
SspMI	CTAG	3 cut(s)	245, 917, 938
SstI	GAGCTC	1 cut(s)	192
StyI	CCWWGG	1 cut(s)	163
TaaI	ACNGT	1 cut(s)	396
TaiI	ACGT	2 cut(s)	47, 629
TaqI	TCGA	5 cut(s)	369, 421, 642, 661, 888
TasI	AATT	4 cut(s)	153, 281, 360, 771
TauI	GCSGC	1 cut(s)	485
TfiI	GAWTC	2 cut(s)	658, 1066
Tru1I	TTAA	4 cut(s)	41, 329, 359, 987
Tru9I	TTAA	4 cut(s)	41, 329, 359, 987
TscAI	CASTG	3 cut(s)	456, 558, 1068
TseFI	GTSAC	1 cut(s)	734
TseI	GCWGC	4 cut(s)	168, 353, 479, 767
Tsp45I	GTSAC	1 cut(s)	734
TspDTI	ATGAA	1 cut(s)	1037
TspGWI	ACGGA	4 cut(s)	35, 293, 426, 642
TspRI	CASTG	3 cut(s)	456, 558, 1068
VpaK11BI	GGWCC	1 cut(s)	981
XhoI	CTCGAG	1 cut(s)	368
XmnI	GAANNNNTTC	1 cut(s)	843
XspI	CTAG	3 cut(s)	245, 917, 938

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.