Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0002826

Physical Location & Seq

Genomic Coordinates Reverse (-)

13877020 .. 13878877

Gene Structure 1858 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g15840.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1083 bp

ATGGAACATACACAAAAGGAGCTAATATTGGAACAAAAAGAAGAGGAACTAGCCAAGGTGGAGGTGTGGAAATATGTGTTAGGATTCTCTAAAATCGCAGTAGTGAAGTGTGCGATTGAGCTTGGAATAGCTGATGCTATTGAAAGCCATGGAAGTGCCATGACACTCTCAGAGCTAGCCGCAATTCTCAAGTGTGATCCTTCTTCTCTTTACCGCATCATGAGGTTCCTAGTTCATCACCAAATATTCAAAGAAGTACAACCCAAAATCCAACTAGGCCCCAGAAGCTATGCACAAACACCTTTGTCCCGCTGCCTACTAAAATCCGGTAAAAACAGCATGGCTGCATTAATTTTGCTGGAGGCTAGTCCGGTAATGCTAGAACCGTGGCATGGCCTTAGTGCTGGGGTTCAGGGCGATGGCATGAGTACTCCCGCGTTTGAGGCAGTACATGGTGAGGATGTATGGAGCTTTGCCGCGGCTAACCCCGGTCACAGCGAGCTTATCAATGAAGCAATGGCTTGTGATGCCAGGCTCGCAGTGCCTGCAGTGATTGAAAGTTGTATAGAGGTTTTTCATGGGATTGAGAGCATAGTAGATGTGGGTGGTGGTGATGGGACTACTTTAAGCTTGTTGGTTAAGGCTTGCCCTTGGATTACTCGAGGGATCAATTTTGATCTTCCTCATGTTGTGTCTGTTGCTAAGGAGAGTGACCGAGTTGAGAATGTTGGAGGTGACATGTTTGATTGTATTCCAAAGGCCGATGCTGCAATTATCAAGTCGGTTCTTCATGATTGGGGCGACGAAGAGTGCATCTGTATACTTAGGAATTGTAGGGAAGCGATTCCCAAGGACAAAGGGAAGGTAATAATTCTGGAAGCTATTATTGAAGAAGATGAGTTGGAAGAAGATGAGCTCACAGATGTGAGGTTGATGCTAGACATGGTGATGATGGCCCACACTAACACTGGCAAAGAGAGGACCTTAAAGGAATGGGGATATGTTCTTCAGCAAGCTGGCTTTAGCCGACACACAGTCACACCTATAAGTGCTGTCCAATCTGTTATTCAGGCTTTTCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0008757 GO:0009058 GO:0009987 GO:0010817 GO:0016740 GO:0016741 GO:0017096 GO:0017144 GO:0018130 GO:0019438 GO:0030186 GO:0030187 GO:0032259 GO:0034641 GO:0034754 GO:0042430 GO:0042435 GO:0042445 GO:0042446 GO:0043603 GO:0043604 GO:0044237 GO:0044249 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0065007 GO:0065008 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dimerisation Methyltransf_2

Protein Analysis

361

Amino Acids

39.5

Weight (kDa)

4.96

Isoelectric Point (pI)

40.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dimerisation	PF08100	23 - 109	1.5e-21	O-methyltransferase dimerisation domain
Methyltransf_2	PF00891	130 - 342	2.4e-47	O-methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002826)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35150 AT4G35160
fragaria_vesca	FvH4_2g15840 FvH4_2g15880 FvH4_2g15880
malus_domestica	MD05G1127400.v1.1 MD05G1127600.v1.1 MD05G1127900.v1.1 MD05G1128000.v1.1 MD05G1128100.v1.1
prunus_persica	Prupe.8G171000_v2.0.a1 Prupe.8G171100_v2.0.a1 Prupe.8G171400_v2.0.a1 Prupe.8G171900_v2.0.a1 Prupe.8G172000_v2.0.a1
pyrus_communis	pycom05g12360 pycom05g12370 pycom05g12400
rosa_chinensis	RchiOBHm_Chr6g0279261 RchiOBHm_Chr6g0279331 RchiOBHm_Chr6g0279441
rosa_laevigata	RLG00000013151 RLG00000013152
rosa_multiflora	Rmu_sc0009584.1_g000002 Rmu_sc0026652.1_g000001
rosa_roxburghii	Rroxscaffold_7G00188960 Rroxscaffold_7G00188980 Rroxscaffold_7G00189010
rosa_rugosa	Rorug06G0124200 Rorug06G0124200
rosa_samantha	Rh6AG232600 Rh6AG232800 Rh6AG233200 Rh6BG237200 Rh6BG237500 Rh6CG239300 Rh6CG239700
rosa_wichuraiana	Rw6G020330 Rw6G020360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	820
AccII	CGCG	2 cut(s)	437, 479
AciI	CCGC	6 cut(s)	180, 214, 310, 435, 477, 479
AclWI	GGATC	2 cut(s)	191, 674
AcuI	CTGAAG	1 cut(s)	992
AfaI	GTAC	3 cut(s)	258, 430, 450
AfiI	CCNNNNNNNGG	1 cut(s)	392
AflIII	ACRYGT	1 cut(s)	738
AgsI	TTSAA	4 cut(s)	143, 250, 557, 890
AhdI	GACNNNNNGTC	1 cut(s)	1034
AjnI	CCWGG	1 cut(s)	530
AjuI	GAANNNNNNNTTGG	2 cut(s)	1050, 1082
AleI	CACNNNNGTG	1 cut(s)	923
Alw21I	GWGCWC	1 cut(s)	918
AlwI	GGATC	2 cut(s)	191, 674
AlwNI	CAGNNNCTG	1 cut(s)	545
Ama87I	CYCGRG	1 cut(s)	660
AoxI	GGCC	4 cut(s)	277, 394, 759, 954
ApeKI	GCWGC	3 cut(s)	312, 344, 767
AseI	ATTAAT	1 cut(s)	350
Asp700I	GAANNNNTTC	1 cut(s)	843
AspS9I	GGNCC	3 cut(s)	278, 955, 981
AsuC2I	CCSGG	1 cut(s)	489
AsuHPI	GGTGA	5 cut(s)	230, 467, 623, 746, 958
AsuNHI	GCTAGC	1 cut(s)	175
AvaI	CYCGRG	1 cut(s)	660
AvaII	GGWCC	1 cut(s)	981
BanII	GRGCYC	1 cut(s)	918
Bbv12I	GWGCWC	1 cut(s)	918
BbvI	GCAGC	3 cut(s)	299, 331, 754
BccI	CCATC	3 cut(s)	413, 608, 946
BciT130I	CCWGG	1 cut(s)	532
BcnI	CCSGG	1 cut(s)	489
BfaI	CTAG	7 cut(s)	50, 176, 230, 275, 366, 380, 938
BfmI	CTRYAG	1 cut(s)	546
BisI	GCNGC	6 cut(s)	180, 313, 345, 477, 480, 768
BlsI	GCNGC	6 cut(s)	181, 314, 346, 478, 481, 769
BmcAI	AGTACT	1 cut(s)	430
Bme1390I	CCNGG	2 cut(s)	489, 532
Bme18I	GGWCC	1 cut(s)	981
BmeRI	GACNNNNNGTC	1 cut(s)	1034
BmeT110I	CYCGRG	1 cut(s)	660
BmgT120I	GGNCC	3 cut(s)	278, 955, 981
BmiI	GGNNCC	2 cut(s)	227, 280
BmrFI	CCNGG	2 cut(s)	489, 532
BmsI	GCATC	6 cut(s)	124, 225, 517, 754, 822, 924
BmtI	GCTAGC	1 cut(s)	179
BpmI	CTGGAG	1 cut(s)	380
Bpu10I	CCTNAGC	1 cut(s)	702
BpuEI	CTTGAG	1 cut(s)	173
BpuMI	CCSGG	1 cut(s)	489
BsaJI	CCNNGG	7 cut(s)	54, 148, 386, 477, 487, 650, 849
BsaWI	WCCGGW	2 cut(s)	326, 370
Bsc4I	CCNNNNNNNGG	1 cut(s)	392
Bse1I	ACTGG	1 cut(s)	973
Bse3DI	GCAATG	1 cut(s)	522
BseBI	CCWGG	1 cut(s)	532
BseDI	CCNNGG	7 cut(s)	54, 148, 386, 477, 487, 650, 849
BseGI	GGATG	1 cut(s)	466
BseLI	CCNNNNNNNGG	1 cut(s)	392
BseMI	GCAATG	1 cut(s)	522
BseMII	CTCAG	1 cut(s)	183
BseNI	ACTGG	1 cut(s)	973
BseXI	GCAGC	3 cut(s)	299, 331, 754
BseYI	CCCAGC	1 cut(s)	404
Bsh1236I	CGCG	2 cut(s)	437, 479
BshFI	GGCC	4 cut(s)	279, 396, 761, 956
BsiHKAI	GWGCWC	1 cut(s)	918
BsiHKCI	CYCGRG	1 cut(s)	660
BsiSI	CCGG	3 cut(s)	327, 371, 489
BslFI	GGGAC	2 cut(s)	292, 631
BslI	CCNNNNNNNGG	1 cut(s)	392
BsmFI	GGGAC	2 cut(s)	292, 631
BsnI	GGCC	4 cut(s)	279, 396, 761, 956
BsoBI	CYCGRG	1 cut(s)	660
Bsp1286I	GDGCHC	1 cut(s)	918
Bsp143I	GATC	3 cut(s)	196, 666, 676
Bsp19I	CCATGG	1 cut(s)	148
BspACI	CCGC	6 cut(s)	180, 214, 310, 435, 477, 479
BspANI	GGCC	4 cut(s)	279, 396, 761, 956
BspCNI	CTCAG	1 cut(s)	182
BspFNI	CGCG	2 cut(s)	437, 479
BspHI	TCATGA	2 cut(s)	219, 790
BspLI	GGNNCC	2 cut(s)	227, 280
BspMAI	CTGCAG	1 cut(s)	550
BspOI	GCTAGC	1 cut(s)	179
BspPI	GGATC	2 cut(s)	191, 674
BsrDI	GCAATG	1 cut(s)	522
BsrI	ACTGG	1 cut(s)	973
BssECI	CCNNGG	7 cut(s)	54, 148, 386, 477, 487, 650, 849
BssMI	GATC	3 cut(s)	196, 666, 676
BssNAI	GTATAC	1 cut(s)	821
BssT1I	CCWWGG	4 cut(s)	54, 148, 650, 849
Bst1107I	GTATAC	1 cut(s)	821
Bst2UI	CCWGG	1 cut(s)	532
Bst4CI	ACNGT	2 cut(s)	387, 1036
Bst6I	CTCTTC	2 cut(s)	36, 801
BstAPI	GCANNNNNTGC	1 cut(s)	545
BstC8I	GCNNGC	7 cut(s)	177, 500, 537, 546, 646, 1014, 1018
BstDEI	CTNAG	4 cut(s)	169, 398, 702, 824
BstDSI	CCRYGG	3 cut(s)	148, 386, 477
BstF5I	GGATG	1 cut(s)	466
BstFNI	CGCG	2 cut(s)	437, 479
BstKTI	GATC	3 cut(s)	199, 669, 679
BstMBI	GATC	3 cut(s)	196, 666, 676
BstMWI	GCNNNNNNNGC	7 cut(s)	285, 443, 527, 536, 541, 545, 767
BstNI	CCWGG	1 cut(s)	532
BstNSI	RCATGY	1 cut(s)	742
BstSCI	CCNGG	2 cut(s)	487, 530
BstSFI	CTRYAG	1 cut(s)	546
BstUI	CGCG	2 cut(s)	437, 479
BstV1I	GCAGC	3 cut(s)	299, 331, 754
BstZ17I	GTATAC	1 cut(s)	821
BsuRI	GGCC	4 cut(s)	279, 396, 761, 956
BtgI	CCRYGG	3 cut(s)	148, 386, 477
BtgZI	GCGATG	1 cut(s)	432
BtsCI	GGATG	1 cut(s)	466
BtsI	GCAGTG	2 cut(s)	546, 555
BtsIMutI	CAGTG	3 cut(s)	546, 555, 966
Cac8I	GCNNGC	7 cut(s)	177, 500, 537, 546, 646, 1014, 1018
CaiI	CAGNNNCTG	1 cut(s)	545
CciI	TCATGA	2 cut(s)	219, 790
Cfr13I	GGNCC	3 cut(s)	278, 955, 981
Cfr42I	CCGCGG	1 cut(s)	480
Csp6I	GTAC	3 cut(s)	257, 429, 449
CviQI	GTAC	3 cut(s)	257, 429, 449
DdeI	CTNAG	4 cut(s)	169, 398, 702, 824
DpnI	GATC	3 cut(s)	198, 668, 678
DpnII	GATC	3 cut(s)	196, 666, 676
DriI	GACNNNNNGTC	1 cut(s)	1034
Eam1104I	CTCTTC	2 cut(s)	36, 801
Eam1105I	GACNNNNNGTC	1 cut(s)	1034
EarI	CTCTTC	2 cut(s)	36, 801
Ecl136II	GAGCTC	1 cut(s)	916
Eco130I	CCWWGG	4 cut(s)	54, 148, 650, 849
Eco24I	GRGCYC	1 cut(s)	918
Eco47I	GGWCC	1 cut(s)	981
Eco53kI	GAGCTC	1 cut(s)	916
Eco57I	CTGAAG	1 cut(s)	992
Eco88I	CYCGRG	1 cut(s)	660
EcoICRI	GAGCTC	1 cut(s)	916
EcoO109I	RGGNCCY	2 cut(s)	278, 981
EcoRII	CCWGG	1 cut(s)	530
EcoT14I	CCWWGG	4 cut(s)	54, 148, 650, 849
EcoT38I	GRGCYC	1 cut(s)	918
ErhI	CCWWGG	4 cut(s)	54, 148, 650, 849
FaqI	GGGAC	2 cut(s)	292, 631
FauI	CCCGC	2 cut(s)	317, 442
FblI	GTMKAC	1 cut(s)	820
Fnu4HI	GCNGC	6 cut(s)	180, 313, 345, 477, 480, 768
FokI	GGATG	1 cut(s)	473
FriOI	GRGCYC	1 cut(s)	918
Fsp4HI	GCNGC	6 cut(s)	180, 313, 345, 477, 480, 768
FspBI	CTAG	7 cut(s)	50, 176, 230, 275, 366, 380, 938
GluI	GCNGC	6 cut(s)	180, 313, 345, 477, 480, 768
GsaI	CCCAGC	1 cut(s)	408
GsuI	CTGGAG	1 cut(s)	380
HaeIII	GGCC	4 cut(s)	279, 396, 761, 956
HapII	CCGG	3 cut(s)	327, 371, 489
HindIII	AAGCTT	1 cut(s)	628
HinfI	GANTC	2 cut(s)	84, 844
HpaII	CCGG	3 cut(s)	327, 371, 489
HphI	GGTGA	5 cut(s)	230, 467, 623, 746, 958
Hpy166II	GTNNAC	1 cut(s)	821
Hpy188I	TCNGA	1 cut(s)	172
Hpy188III	TCNNGA	3 cut(s)	220, 791, 875
Hpy8I	GTNNAC	1 cut(s)	821
Hpy99I	CGWCG	1 cut(s)	806
HpyAV	CCTTC	2 cut(s)	210, 856
HpyCH4III	ACNGT	2 cut(s)	387, 1036
HpyCH4V	TGCA	5 cut(s)	293, 347, 548, 770, 813
HpyF10VI	GCNNNNNNNGC	7 cut(s)	285, 443, 527, 536, 541, 545, 767
HpyF3I	CTNAG	4 cut(s)	169, 398, 702, 824
KspI	CCGCGG	1 cut(s)	480
Kzo9I	GATC	3 cut(s)	196, 666, 676
LmnI	GCTCC	2 cut(s)	19, 468
Lsp1109I	GCAGC	3 cut(s)	299, 331, 754
LweI	GCATC	6 cut(s)	124, 225, 517, 754, 822, 924
MaeI	CTAG	7 cut(s)	50, 176, 230, 275, 366, 380, 938
MaeIII	GTNAC	4 cut(s)	491, 710, 734, 1036
MalI	GATC	3 cut(s)	198, 668, 678
MboI	GATC	3 cut(s)	196, 666, 676
MhlI	GDGCHC	1 cut(s)	918
MluCI	AATT	6 cut(s)	183, 351, 670, 771, 829, 870
MmeI	TCCRAC	3 cut(s)	295, 709, 882
MroXI	GAANNNNTTC	1 cut(s)	843
MseI	TTAA	4 cut(s)	350, 626, 639, 986
MslI	CAYNNNNRTG	3 cut(s)	153, 923, 947
MspA1I	CMGCKG	2 cut(s)	312, 479
MspI	CCGG	3 cut(s)	327, 371, 489
MspR9I	CCNGG	2 cut(s)	489, 532
MvaI	CCWGG	1 cut(s)	532
MvnI	CGCG	2 cut(s)	437, 479
MwoI	GCNNNNNNNGC	7 cut(s)	285, 443, 527, 536, 541, 545, 767
NciI	CCSGG	1 cut(s)	489
NcoI	CCATGG	1 cut(s)	148
NdeII	GATC	3 cut(s)	196, 666, 676
NheI	GCTAGC	1 cut(s)	175
NlaIV	GGNNCC	2 cut(s)	227, 280
NmuCI	GTSAC	4 cut(s)	491, 710, 734, 1036
NspI	RCATGY	1 cut(s)	742
OliI	CACNNNNGTG	1 cut(s)	923
PaeR7I	CTCGAG	1 cut(s)	660
PagI	TCATGA	2 cut(s)	219, 790
PciI	ACATGT	1 cut(s)	738
PdmI	GAANNNNTTC	1 cut(s)	843
PfeI	GAWTC	2 cut(s)	84, 844
PkrI	GCNGC	6 cut(s)	181, 314, 346, 478, 481, 769
PpuMI	RGGWCCY	1 cut(s)	981
PscI	ACATGT	1 cut(s)	738
PshBI	ATTAAT	1 cut(s)	350
Psp124BI	GAGCTC	1 cut(s)	918
Psp5II	RGGWCCY	1 cut(s)	981
Psp6I	CCWGG	1 cut(s)	530
PspFI	CCCAGC	1 cut(s)	404
PspGI	CCWGG	1 cut(s)	530
PspN4I	GGNNCC	2 cut(s)	227, 280
PspPI	GGNCC	3 cut(s)	278, 955, 981
PspPPI	RGGWCCY	1 cut(s)	981
PspXI	VCTCGAGB	1 cut(s)	660
PstI	CTGCAG	1 cut(s)	550
PstNI	CAGNNNCTG	1 cut(s)	545
RsaI	GTAC	3 cut(s)	258, 430, 450
RsaNI	GTAC	3 cut(s)	257, 429, 449
RseI	CAYNNNNRTG	3 cut(s)	153, 923, 947
SacI	GAGCTC	1 cut(s)	918
SacII	CCGCGG	1 cut(s)	480
SaqAI	TTAA	4 cut(s)	350, 626, 639, 986
SatI	GCNGC	6 cut(s)	180, 313, 345, 477, 480, 768
Sau3AI	GATC	3 cut(s)	196, 666, 676
Sau96I	GGNCC	3 cut(s)	278, 955, 981
ScaI	AGTACT	1 cut(s)	430
ScrFI	CCNGG	2 cut(s)	489, 532
SduI	GDGCHC	1 cut(s)	918
SfaNI	GCATC	6 cut(s)	124, 225, 517, 754, 822, 924
SfcI	CTRYAG	1 cut(s)	546
Sfr274I	CTCGAG	1 cut(s)	660
Sfr303I	CCGCGG	1 cut(s)	480
SgrBI	CCGCGG	1 cut(s)	480
SinI	GGWCC	1 cut(s)	981
SlaI	CTCGAG	1 cut(s)	660
SmiMI	CAYNNNNRTG	3 cut(s)	153, 923, 947
SmlI	CTYRAG	2 cut(s)	188, 660
SmoI	CTYRAG	2 cut(s)	188, 660
Sse9I	AATT	6 cut(s)	183, 351, 670, 771, 829, 870
SsiI	CCGC	6 cut(s)	180, 214, 310, 435, 477, 479
SspI	AATATT	2 cut(s)	27, 246
SspMI	CTAG	7 cut(s)	50, 176, 230, 275, 366, 380, 938
SstI	GAGCTC	1 cut(s)	918
StyD4I	CCNGG	2 cut(s)	487, 530
StyI	CCWWGG	4 cut(s)	54, 148, 650, 849
TaaI	ACNGT	2 cut(s)	387, 1036
TaqI	TCGA	1 cut(s)	661
TaqII	GACCGA	1 cut(s)	729
TasI	AATT	6 cut(s)	183, 351, 670, 771, 829, 870
TatI	WGTACW	3 cut(s)	256, 428, 448
TauI	GCSGC	3 cut(s)	182, 479, 482
TfiI	GAWTC	2 cut(s)	84, 844
Tru1I	TTAA	4 cut(s)	350, 626, 639, 986
Tru9I	TTAA	4 cut(s)	350, 626, 639, 986
TscAI	CASTG	3 cut(s)	546, 555, 973
TseFI	GTSAC	4 cut(s)	491, 710, 734, 1036
TseI	GCWGC	3 cut(s)	312, 344, 767
Tsp45I	GTSAC	4 cut(s)	491, 710, 734, 1036
TspDTI	ATGAA	4 cut(s)	224, 525, 566, 779
TspRI	CASTG	3 cut(s)	546, 555, 973
VpaK11BI	GGWCC	1 cut(s)	981
VspI	ATTAAT	1 cut(s)	350
XceI	RCATGY	1 cut(s)	742
XcmI	CCANNNNNNNNNTGG	1 cut(s)	965
XhoI	CTCGAG	1 cut(s)	660
XmiI	GTMKAC	1 cut(s)	820
XmnI	GAANNNNTTC	1 cut(s)	843
XspI	CTAG	7 cut(s)	50, 176, 230, 275, 366, 380, 938
ZrmI	AGTACT	1 cut(s)	430

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.