Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0002826

Physical Location & Seq

Genomic Coordinates Reverse (-)

25201177 .. 25201965

Gene Structure 789 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1128100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGGAGGATAATCAAAGTGTGTTAACATGGGAAGAGGAAGAAGAACATGTGAAGGTGGATGTATGGAAATATGTGTTCGGGTTCGTTGAAATCGTAGTGATAAAATGTGCTATTGAGCTCGGGATAGCTGAAGCAATTGAAACCCGTGGAAGCCCCATGACCCTCTTAGAGCTCTCTTCTGCTTTAAGATGCGATCCTTCTCACATTTACCGCATCATGAGGGTTCTAGTACATCTCAAAATATTCAAAGAACAAACCACAATCCAATTAGGCTCCAAAAGTTATGCACAAACACCTTTGTCCCGCTTATTATTGAAATCTGGAGAAAATAGCATGGCGGAACTGATCTTGCTGGAGAGTAGTCCGACAATGTTGGCACCATGGCACAGCCTAAGTTCCCGAGTTCAAGGAAATCTTAGGAATCCAGTGTTTGAGGAACTACACGGTAAGGACCTATGGAGCTTTGGCGTGGCCAACCCTGATCACAACAAACTCTTCAATGAAGCAATGGCTTGTGATGCAAGGTTGGCTGTGCCTGCATTGGTTAAAAGCTGTGTAAAGGTGTTCAAAGGGGTTGGCACACTAGTAGATGTGGGAGGGGGTAATGAGACTACATTGCGCTTGTTGGTTGAGGCTTGTCCTTGGATTCAAGGCATCAACTTTGATCTTCCTCATGTTGTCTCTGATGCTCAGAAGCCTGACCGCATTGAATATGTTGGAGGCAACATGTTTGATTGTGTTCCGAAGGCTGATGCTATAATTATCAAGGTTAGTGTTTATAGTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0008757 GO:0009058 GO:0009987 GO:0010817 GO:0016740 GO:0016741 GO:0017096 GO:0017144 GO:0018130 GO:0019438 GO:0030186 GO:0030187 GO:0032259 GO:0034641 GO:0034754 GO:0042430 GO:0042435 GO:0042445 GO:0042446 GO:0043603 GO:0043604 GO:0044237 GO:0044249 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0065007 GO:0065008 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dimerisation Methyltransf_2

Protein Analysis

263

Amino Acids

29.12

Weight (kDa)

5.42

Isoelectric Point (pI)

41.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dimerisation	PF08100	22 - 107	3.9e-21	O-methyltransferase dimerisation domain
Methyltransf_2	PF00891	128 - 257	7.5e-24	O-methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002826)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35150 AT4G35160
fragaria_vesca	FvH4_2g15840 FvH4_2g15880 FvH4_2g15880
malus_domestica	MD05G1127400.v1.1 MD05G1127600.v1.1 MD05G1127900.v1.1 MD05G1128000.v1.1 MD05G1128100.v1.1
prunus_persica	Prupe.8G171000_v2.0.a1 Prupe.8G171100_v2.0.a1 Prupe.8G171400_v2.0.a1 Prupe.8G171900_v2.0.a1 Prupe.8G172000_v2.0.a1
pyrus_communis	pycom05g12360 pycom05g12370 pycom05g12400
rosa_chinensis	RchiOBHm_Chr6g0279261 RchiOBHm_Chr6g0279331 RchiOBHm_Chr6g0279441
rosa_laevigata	RLG00000013151 RLG00000013152
rosa_multiflora	Rmu_sc0009584.1_g000002 Rmu_sc0026652.1_g000001
rosa_roxburghii	Rroxscaffold_7G00188960 Rroxscaffold_7G00188980 Rroxscaffold_7G00189010
rosa_rugosa	Rorug06G0124200 Rorug06G0124200
rosa_samantha	Rh6AG232600 Rh6AG232800 Rh6AG233200 Rh6BG237200 Rh6BG237500 Rh6CG239300 Rh6CG239700
rosa_wichuraiana	Rw6G020330 Rw6G020360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	376
AciI	CCGC	4 cut(s)	211, 304, 338, 703
AclWI	GGATC	1 cut(s)	188
AcoI	YGGCCR	1 cut(s)	471
AcuI	CTGAAG	1 cut(s)	150
AfaI	GTAC	1 cut(s)	231
AflIII	ACRYGT	2 cut(s)	46, 726
AgsI	TTSAA	9 cut(s)	89, 140, 247, 316, 407, 499, 568, 650, 710
AhlI	ACTAGT	1 cut(s)	583
AluBI	AGCT	5 cut(s)	118, 128, 172, 462, 552
AluI	AGCT	5 cut(s)	118, 128, 172, 462, 552
Alw21I	GWGCWC	2 cut(s)	120, 174
Alw26I	GTCTC	2 cut(s)	602, 685
AlwI	GGATC	1 cut(s)	188
Ama87I	CYCGRG	2 cut(s)	119, 399
AoxI	GGCC	1 cut(s)	471
AspLEI	GCGC	1 cut(s)	621
AspS9I	GGNCC	1 cut(s)	451
AvaI	CYCGRG	2 cut(s)	119, 399
AvaII	GGWCC	1 cut(s)	451
BalI	TGGCCA	1 cut(s)	473
BanI	GGYRCC	1 cut(s)	376
BanII	GRGCYC	2 cut(s)	120, 174
Bbv12I	GWGCWC	2 cut(s)	120, 174
BclI	TGATCA	1 cut(s)	481
BcoDI	GTCTC	2 cut(s)	602, 685
BcuI	ACTAGT	1 cut(s)	583
BfaI	CTAG	2 cut(s)	227, 584
Bme18I	GGWCC	1 cut(s)	451
BmeT110I	CYCGRG	2 cut(s)	119, 399
BmgT120I	GGNCC	1 cut(s)	451
BmiI	GGNNCC	2 cut(s)	274, 378
BmsI	GCATC	6 cut(s)	179, 222, 508, 663, 676, 742
BpmI	CTGGAG	2 cut(s)	342, 374
BsaJI	CCNNGG	3 cut(s)	145, 380, 641
Bse1I	ACTGG	1 cut(s)	425
Bse3DI	GCAATG	2 cut(s)	513, 614
BseDI	CCNNGG	3 cut(s)	145, 380, 641
BseGI	GGATG	1 cut(s)	64
BseMI	GCAATG	2 cut(s)	513, 614
BseMII	CTCAG	1 cut(s)	704
BseNI	ACTGG	1 cut(s)	425
BshFI	GGCC	1 cut(s)	473
BshNI	GGYRCC	1 cut(s)	376
BsiHKAI	GWGCWC	2 cut(s)	120, 174
BsiHKCI	CYCGRG	2 cut(s)	119, 399
BslFI	GGGAC	1 cut(s)	286
BsmAI	GTCTC	2 cut(s)	602, 685
BsmFI	GGGAC	1 cut(s)	286
BsnI	GGCC	1 cut(s)	473
BsoBI	CYCGRG	2 cut(s)	119, 399
Bsp1286I	GDGCHC	2 cut(s)	120, 174
Bsp143I	GATC	4 cut(s)	193, 345, 481, 664
Bsp19I	CCATGG	1 cut(s)	380
BspACI	CCGC	4 cut(s)	211, 304, 338, 703
BspANI	GGCC	1 cut(s)	473
BspCNI	CTCAG	1 cut(s)	703
BspHI	TCATGA	1 cut(s)	216
BspLI	GGNNCC	2 cut(s)	274, 378
BspPI	GGATC	1 cut(s)	188
BspT107I	GGYRCC	1 cut(s)	376
BsrDI	GCAATG	2 cut(s)	513, 614
BsrI	ACTGG	1 cut(s)	425
BssECI	CCNNGG	3 cut(s)	145, 380, 641
BssMI	GATC	4 cut(s)	193, 345, 481, 664
BssT1I	CCWWGG	2 cut(s)	380, 641
Bst4CI	ACNGT	1 cut(s)	446
Bst6I	CTCTTC	3 cut(s)	27, 181, 500
BstC8I	GCNNGC	1 cut(s)	537
BstDEI	CTNAG	4 cut(s)	166, 392, 416, 690
BstDSI	CCRYGG	2 cut(s)	145, 380
BstF5I	GGATG	1 cut(s)	64
BstHHI	GCGC	1 cut(s)	621
BstKTI	GATC	4 cut(s)	196, 348, 484, 667
BstMAI	GTCTC	2 cut(s)	602, 685
BstMBI	GATC	4 cut(s)	193, 345, 481, 664
BstMWI	GCNNNNNNNGC	3 cut(s)	518, 527, 536
BstNSI	RCATGY	2 cut(s)	50, 730
BsuRI	GGCC	1 cut(s)	473
BtgI	CCRYGG	2 cut(s)	145, 380
BtsCI	GGATG	1 cut(s)	64
BtsIMutI	CAGTG	1 cut(s)	432
Cac8I	GCNNGC	1 cut(s)	537
CciI	TCATGA	1 cut(s)	216
CfoI	GCGC	1 cut(s)	621
Cfr13I	GGNCC	1 cut(s)	451
Csp6I	GTAC	1 cut(s)	230
CviAII	CATG	8 cut(s)	27, 47, 157, 217, 334, 381, 674, 727
CviQI	GTAC	1 cut(s)	230
DdeI	CTNAG	4 cut(s)	166, 392, 416, 690
DpnI	GATC	4 cut(s)	195, 347, 483, 666
DpnII	GATC	4 cut(s)	193, 345, 481, 664
EaeI	YGGCCR	1 cut(s)	471
Eam1104I	CTCTTC	3 cut(s)	27, 181, 500
EarI	CTCTTC	3 cut(s)	27, 181, 500
EciI	GGCGGA	1 cut(s)	353
Ecl136II	GAGCTC	2 cut(s)	118, 172
Eco130I	CCWWGG	2 cut(s)	380, 641
Eco24I	GRGCYC	2 cut(s)	120, 174
Eco47I	GGWCC	1 cut(s)	451
Eco53kI	GAGCTC	2 cut(s)	118, 172
Eco57I	CTGAAG	1 cut(s)	150
Eco88I	CYCGRG	2 cut(s)	119, 399
EcoICRI	GAGCTC	2 cut(s)	118, 172
EcoO109I	RGGNCCY	1 cut(s)	451
EcoT14I	CCWWGG	2 cut(s)	380, 641
EcoT38I	GRGCYC	2 cut(s)	120, 174
ErhI	CCWWGG	2 cut(s)	380, 641
FaeI	CATG	8 cut(s)	30, 50, 160, 220, 337, 384, 677, 730
FalI	AAGNNNNNCTT	2 cut(s)	399, 431
FaqI	GGGAC	1 cut(s)	286
FatI	CATG	8 cut(s)	26, 46, 156, 216, 333, 380, 673, 726
FauI	CCCGC	1 cut(s)	311
FbaI	TGATCA	1 cut(s)	481
FokI	GGATG	1 cut(s)	71
FriOI	GRGCYC	2 cut(s)	120, 174
FspBI	CTAG	2 cut(s)	227, 584
GlaI	GCGC	1 cut(s)	620
GsuI	CTGGAG	2 cut(s)	342, 374
HaeIII	GGCC	1 cut(s)	473
HhaI	GCGC	1 cut(s)	621
Hin1II	CATG	8 cut(s)	30, 50, 160, 220, 337, 384, 677, 730
Hin6I	GCGC	1 cut(s)	619
HinP1I	GCGC	1 cut(s)	619
HincII	GTYRAC	1 cut(s)	24
HindII	GTYRAC	1 cut(s)	24
HinfI	GANTC	2 cut(s)	421, 646
HpaI	GTTAAC	1 cut(s)	24
Hpy166II	GTNNAC	1 cut(s)	24
Hpy188I	TCNGA	4 cut(s)	366, 685, 693, 744
Hpy188III	TCNNGA	4 cut(s)	121, 217, 321, 399
Hpy8I	GTNNAC	1 cut(s)	24
HpyAV	CCTTC	3 cut(s)	46, 207, 739
HpyCH4III	ACNGT	1 cut(s)	446
HpyCH4V	TGCA	3 cut(s)	287, 521, 539
HpyF10VI	GCNNNNNNNGC	3 cut(s)	518, 527, 536
HpyF3I	CTNAG	4 cut(s)	166, 392, 416, 690
Hsp92II	CATG	8 cut(s)	30, 50, 160, 220, 337, 384, 677, 730
HspAI	GCGC	1 cut(s)	619
Ksp22I	TGATCA	1 cut(s)	481
KspAI	GTTAAC	1 cut(s)	24
Kzo9I	GATC	4 cut(s)	193, 345, 481, 664
LmnI	GCTCC	2 cut(s)	278, 459
LpnPI	CCDG	6 cut(s)	306, 338, 438, 492, 549, 711
LweI	GCATC	6 cut(s)	179, 222, 508, 663, 676, 742
MaeI	CTAG	2 cut(s)	227, 584
MalI	GATC	4 cut(s)	195, 347, 483, 666
MboI	GATC	4 cut(s)	193, 345, 481, 664
MboII	GAAGA	6 cut(s)	44, 50, 53, 168, 487, 659
MfeI	CAATTG	1 cut(s)	135
MhlI	GDGCHC	2 cut(s)	120, 174
MlsI	TGGCCA	1 cut(s)	473
MluCI	AATT	3 cut(s)	135, 266, 759
MluNI	TGGCCA	1 cut(s)	473
MmeI	TCCRAC	2 cut(s)	389, 697
MnlI	CCTC	8 cut(s)	28, 173, 213, 427, 590, 625, 681, 713
Mox20I	TGGCCA	1 cut(s)	473
MscI	TGGCCA	1 cut(s)	473
MseI	TTAA	3 cut(s)	23, 185, 546
Msp20I	TGGCCA	1 cut(s)	473
MunI	CAATTG	1 cut(s)	135
MwoI	GCNNNNNNNGC	3 cut(s)	518, 527, 536
NcoI	CCATGG	1 cut(s)	380
NdeII	GATC	4 cut(s)	193, 345, 481, 664
NlaIII	CATG	8 cut(s)	30, 50, 160, 220, 337, 384, 677, 730
NlaIV	GGNNCC	2 cut(s)	274, 378
NspI	RCATGY	2 cut(s)	50, 730
PagI	TCATGA	1 cut(s)	216
PciI	ACATGT	2 cut(s)	46, 726
PcsI	WCGNNNNNNNCGW	1 cut(s)	90
PfeI	GAWTC	2 cut(s)	421, 646
PpuMI	RGGWCCY	1 cut(s)	451
PscI	ACATGT	2 cut(s)	46, 726
Psp124BI	GAGCTC	2 cut(s)	120, 174
Psp5II	RGGWCCY	1 cut(s)	451
PspN4I	GGNNCC	2 cut(s)	274, 378
PspPI	GGNCC	1 cut(s)	451
PspPPI	RGGWCCY	1 cut(s)	451
RsaI	GTAC	1 cut(s)	231
RsaNI	GTAC	1 cut(s)	230
SacI	GAGCTC	2 cut(s)	120, 174
SaqAI	TTAA	3 cut(s)	23, 185, 546
Sau3AI	GATC	4 cut(s)	193, 345, 481, 664
Sau96I	GGNCC	1 cut(s)	451
SduI	GDGCHC	2 cut(s)	120, 174
SfaNI	GCATC	6 cut(s)	179, 222, 508, 663, 676, 742
SinI	GGWCC	1 cut(s)	451
SpeI	ACTAGT	1 cut(s)	583
Sse9I	AATT	3 cut(s)	135, 266, 759
SsiI	CCGC	4 cut(s)	211, 304, 338, 703
SspI	AATATT	1 cut(s)	243
SspMI	CTAG	2 cut(s)	227, 584
SstI	GAGCTC	2 cut(s)	120, 174
StyI	CCWWGG	2 cut(s)	380, 641
TaaI	ACNGT	1 cut(s)	446
TasI	AATT	3 cut(s)	135, 266, 759
TatI	WGTACW	1 cut(s)	229
TfiI	GAWTC	2 cut(s)	421, 646
Tru1I	TTAA	3 cut(s)	23, 185, 546
Tru9I	TTAA	3 cut(s)	23, 185, 546
TscAI	CASTG	1 cut(s)	432
TspDTI	ATGAA	1 cut(s)	516
TspRI	CASTG	1 cut(s)	432
VpaK11BI	GGWCC	1 cut(s)	451
XceI	RCATGY	2 cut(s)	50, 730
XspI	CTAG	2 cut(s)	227, 584

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.