Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0002826

Physical Location & Seq

Genomic Coordinates Reverse (-)

17541870 .. 17544061

Gene Structure 2192 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G171400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1077 bp

ATGGAAGATAAACAAAGAGAGATAGGAGGAGAAGAGAAAGAAGAAGAACATGCCAAAGTGCAAATCTGGAAATATGTGTTCGGGTTTGCTGAAATCGCGGTGGTAAAATGTGCCATTCAGCTTGGAATAGCTGATGCAATTGAAAGCCATGGCAGCCCCATGACACTCCTAGAACTATCATCTGCTCTAAGATGTGATCCTTCTCCCCTTTACCGCATCATGAGGGTCCTAGTCCACCTCAAAATATTCAAAGAAAAACCAGCAACCCAATTAGGCCCCGAAGTTTATACACAAACACCTTTGTCTAAACGGCTATTGAAATCTGGACAAAACAGCATGGCTGCTTTAATTTTGCTGGAGAGTAGCCCGGTAATGCTGGCACCGTGGCATGGCCTAAGTGCTCGAATTCAAGGCAATATTAGAAACCCAGTGTTTGAGGAAGTACATGGTGAGGACCTATGGAGCTTTGGCGCAGCCAATCCTGATCACAACAAGCTTTTCAATGAAGCAATGGCTTGTGATGCAAGGGTGCATGTGCCTGCGGTGATTGAAAGTCGTTTAGAGGTGTTCAAAGGGATTGAGACAATCGTAGATGTGGGCGGGGGTGATGGGAGTACTATGCGCTTGTTGGTTGAGGCATGTCCTTGGATTCAAGGCATCAACTTTGATCTTCCTCATGTTGTGTCTGTTGCTCAGGAGTGTGACCGCATTGAGAATGTTGGAGGTGACATGTTTGATTGTGTTCCAAAGGCTGATGCTGTAATTATTAAGGGGGTTCTTCACGACTGGGGCGATGATGAGTGCATCCGTATCCTTAAGAAGTGCAGGGAAGCTATTCCGGAAGATAAAGGGAAGGTGATAATCGTAGAAGCGGTTATCGATGAAAAAGATGAAAAAGCGGACATCAAACTAACAAATGTGAGATTGATGCTAGACATGGTGATGATGGCCCATACAAACACAGGAAAAGAAAGGACCTTGAAGGAATGGGGTTATGTTCTTGGGGAAGCTGGCTTTAGCCGACACACTATCACACCTATTCATGCTGTCCCATCCGTTATTCAGGCTTTTCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0008757 GO:0009058 GO:0009987 GO:0010817 GO:0016740 GO:0016741 GO:0017096 GO:0017144 GO:0018130 GO:0019438 GO:0030186 GO:0030187 GO:0032259 GO:0034641 GO:0034754 GO:0042430 GO:0042435 GO:0042445 GO:0042446 GO:0043603 GO:0043604 GO:0044237 GO:0044249 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0065007 GO:0065008 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dimerisation Methyltransf_2

Protein Analysis

359

Amino Acids

39.7

Weight (kDa)

5.37

Isoelectric Point (pI)

37.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002826)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35150 AT4G35160
fragaria_vesca	FvH4_2g15840 FvH4_2g15880 FvH4_2g15880
malus_domestica	MD05G1127400.v1.1 MD05G1127600.v1.1 MD05G1127900.v1.1 MD05G1128000.v1.1 MD05G1128100.v1.1
prunus_persica	Prupe.8G171000_v2.0.a1 Prupe.8G171100_v2.0.a1 Prupe.8G171400_v2.0.a1 Prupe.8G171900_v2.0.a1 Prupe.8G172000_v2.0.a1
pyrus_communis	pycom05g12360 pycom05g12370 pycom05g12400
rosa_chinensis	RchiOBHm_Chr6g0279261 RchiOBHm_Chr6g0279331 RchiOBHm_Chr6g0279441
rosa_laevigata	RLG00000013151 RLG00000013152
rosa_multiflora	Rmu_sc0009584.1_g000002 Rmu_sc0026652.1_g000001
rosa_roxburghii	Rroxscaffold_7G00188960 Rroxscaffold_7G00188980 Rroxscaffold_7G00189010
rosa_rugosa	Rorug06G0124200 Rorug06G0124200
rosa_samantha	Rh6AG232600 Rh6AG232800 Rh6AG233200 Rh6BG237200 Rh6BG237500 Rh6CG239300 Rh6CG239700
rosa_wichuraiana	Rw6G020330 Rw6G020360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	379
AccII	CGCG	1 cut(s)	98
AccIII	TCCGGA	1 cut(s)	838
AciI	CCGC	7 cut(s)	98, 214, 542, 600, 706, 872, 899
AclWI	GGATC	1 cut(s)	191
AcsI	RAATTY	1 cut(s)	405
AfaI	GTAC	2 cut(s)	444, 616
AfiI	CCNNNNNNNGG	1 cut(s)	389
AflII	CTTAAG	1 cut(s)	815
AflIII	ACRYGT	1 cut(s)	729
AgsI	TTSAA	9 cut(s)	143, 250, 319, 410, 502, 551, 571, 653, 982
AluBI	AGCT	6 cut(s)	121, 131, 465, 496, 833, 1010
AluI	AGCT	6 cut(s)	121, 131, 465, 496, 833, 1010
Alw21I	GWGCWC	1 cut(s)	403
Alw26I	GTCTC	1 cut(s)	575
AlwI	GGATC	1 cut(s)	191
Aor13HI	TCCGGA	1 cut(s)	838
AoxI	GGCC	3 cut(s)	274, 391, 948
ApeKI	GCWGC	3 cut(s)	153, 341, 473
ApoI	RAATTY	1 cut(s)	405
Asp700I	GAANNNNTTC	1 cut(s)	834
AspLEI	GCGC	2 cut(s)	473, 624
AspS9I	GGNCC	5 cut(s)	226, 275, 454, 949, 975
AsuC2I	CCSGG	1 cut(s)	368
AsuHPI	GGTGA	6 cut(s)	461, 556, 617, 737, 868, 952
AvaII	GGWCC	3 cut(s)	226, 454, 975
BanI	GGYRCC	1 cut(s)	379
Bbv12I	GWGCWC	1 cut(s)	403
BbvI	GCAGC	3 cut(s)	165, 328, 485
BccI	CCATC	3 cut(s)	602, 940, 1060
BceAI	ACGGC	1 cut(s)	326
BciVI	GTATCC	1 cut(s)	821
BclI	TGATCA	1 cut(s)	484
BcnI	CCSGG	1 cut(s)	368
BcoDI	GTCTC	1 cut(s)	575
BfaI	CTAG	3 cut(s)	170, 230, 932
BfrI	CTTAAG	1 cut(s)	815
BfuI	GTATCC	1 cut(s)	821
BisI	GCNGC	3 cut(s)	154, 342, 474
BlsI	GCNGC	3 cut(s)	155, 343, 475
BmcAI	AGTACT	1 cut(s)	616
Bme1390I	CCNGG	1 cut(s)	368
Bme18I	GGWCC	3 cut(s)	226, 454, 975
BmgT120I	GGNCC	5 cut(s)	226, 275, 454, 949, 975
BmiI	GGNNCC	3 cut(s)	227, 277, 381
BmrFI	CCNGG	1 cut(s)	368
BmrI	ACTGGG	2 cut(s)	422, 796
BmsI	GCATC	7 cut(s)	124, 225, 511, 666, 745, 813, 918
BmuI	ACTGGG	2 cut(s)	422, 796
BpmI	CTGGAG	1 cut(s)	377
Bpu10I	CCTNAGC	1 cut(s)	693
BpuMI	CCSGG	1 cut(s)	368
Bsa29I	ATCGAT	1 cut(s)	879
BsaJI	CCNNGG	3 cut(s)	148, 383, 644
BsaWI	WCCGGW	1 cut(s)	838
Bsc4I	CCNNNNNNNGG	1 cut(s)	389
Bse1I	ACTGG	2 cut(s)	428, 791
Bse3DI	GCAATG	1 cut(s)	516
BseAI	TCCGGA	1 cut(s)	838
BseCI	ATCGAT	1 cut(s)	879
BseDI	CCNNGG	3 cut(s)	148, 383, 644
BseGI	GGATG	2 cut(s)	804, 1052
BseLI	CCNNNNNNNGG	1 cut(s)	389
BseMI	GCAATG	1 cut(s)	516
BseMII	CTCAG	1 cut(s)	707
BseNI	ACTGG	2 cut(s)	428, 791
BseRI	GAGGAG	1 cut(s)	42
BseXI	GCAGC	3 cut(s)	165, 328, 485
BsgI	GTGCAG	1 cut(s)	844
Bsh1236I	CGCG	1 cut(s)	98
BshFI	GGCC	3 cut(s)	276, 393, 950
BshNI	GGYRCC	1 cut(s)	379
BshVI	ATCGAT	1 cut(s)	879
BsiHKAI	GWGCWC	1 cut(s)	403
BsiSI	CCGG	2 cut(s)	368, 839
BslFI	GGGAC	1 cut(s)	1034
BslI	CCNNNNNNNGG	1 cut(s)	389
BsmAI	GTCTC	1 cut(s)	575
BsmFI	GGGAC	1 cut(s)	1034
BsnI	GGCC	3 cut(s)	276, 393, 950
Bsp1286I	GDGCHC	1 cut(s)	403
Bsp13I	TCCGGA	1 cut(s)	838
Bsp143I	GATC	3 cut(s)	196, 484, 667
Bsp19I	CCATGG	1 cut(s)	148
BspACI	CCGC	7 cut(s)	98, 214, 542, 600, 706, 872, 899
BspANI	GGCC	3 cut(s)	276, 393, 950
BspCNI	CTCAG	1 cut(s)	706
BspDI	ATCGAT	1 cut(s)	879
BspEI	TCCGGA	1 cut(s)	838
BspFNI	CGCG	1 cut(s)	98
BspHI	TCATGA	1 cut(s)	219
BspLI	GGNNCC	3 cut(s)	227, 277, 381
BspPI	GGATC	1 cut(s)	191
BspT107I	GGYRCC	1 cut(s)	379
BspTI	CTTAAG	1 cut(s)	815
BsrDI	GCAATG	1 cut(s)	516
BsrI	ACTGG	2 cut(s)	428, 791
BssECI	CCNNGG	3 cut(s)	148, 383, 644
BssMI	GATC	3 cut(s)	196, 484, 667
BssT1I	CCWWGG	2 cut(s)	148, 644
Bst4CI	ACNGT	1 cut(s)	384
Bst6I	CTCTTC	1 cut(s)	27
BstAFI	CTTAAG	1 cut(s)	815
BstC8I	GCNNGC	3 cut(s)	378, 540, 1012
BstDEI	CTNAG	3 cut(s)	188, 395, 693
BstDSI	CCRYGG	2 cut(s)	148, 383
BstF5I	GGATG	2 cut(s)	804, 1052
BstFNI	CGCG	1 cut(s)	98
BstHHI	GCGC	2 cut(s)	473, 624
BstKTI	GATC	3 cut(s)	199, 487, 670
BstMAI	GTCTC	1 cut(s)	575
BstMBI	GATC	3 cut(s)	196, 484, 667
BstMWI	GCNNNNNNNGC	3 cut(s)	95, 153, 521
BstNSI	RCATGY	4 cut(s)	53, 536, 642, 733
BstSCI	CCNGG	1 cut(s)	366
BstUI	CGCG	1 cut(s)	98
BstV1I	GCAGC	3 cut(s)	165, 328, 485
Bsu15I	ATCGAT	1 cut(s)	879
BsuI	GTATCC	1 cut(s)	821
BsuRI	GGCC	3 cut(s)	276, 393, 950
BsuTUI	ATCGAT	1 cut(s)	879
BtgI	CCRYGG	2 cut(s)	148, 383
BtgZI	GCGATG	1 cut(s)	807
BtsCI	GGATG	2 cut(s)	804, 1052
BtsIMutI	CAGTG	1 cut(s)	435
Cac8I	GCNNGC	3 cut(s)	378, 540, 1012
CciI	TCATGA	1 cut(s)	219
CfoI	GCGC	2 cut(s)	473, 624
Cfr13I	GGNCC	5 cut(s)	226, 275, 454, 949, 975
ClaI	ATCGAT	1 cut(s)	879
Csp6I	GTAC	2 cut(s)	443, 615
CviQI	GTAC	2 cut(s)	443, 615
DdeI	CTNAG	3 cut(s)	188, 395, 693
DpnI	GATC	3 cut(s)	198, 486, 669
DpnII	GATC	3 cut(s)	196, 484, 667
Eam1104I	CTCTTC	1 cut(s)	27
EarI	CTCTTC	1 cut(s)	27
Eco130I	CCWWGG	2 cut(s)	148, 644
Eco47I	GGWCC	3 cut(s)	226, 454, 975
EcoO109I	RGGNCCY	4 cut(s)	226, 275, 454, 975
EcoRI	GAATTC	1 cut(s)	405
EcoT14I	CCWWGG	2 cut(s)	148, 644
ErhI	CCWWGG	2 cut(s)	148, 644
FaqI	GGGAC	1 cut(s)	1034
FauI	CCCGC	1 cut(s)	593
FbaI	TGATCA	1 cut(s)	484
Fnu4HI	GCNGC	3 cut(s)	154, 342, 474
FokI	GGATG	2 cut(s)	791, 1039
Fsp4HI	GCNGC	3 cut(s)	154, 342, 474
FspBI	CTAG	3 cut(s)	170, 230, 932
GlaI	GCGC	2 cut(s)	472, 623
GluI	GCNGC	3 cut(s)	154, 342, 474
GsuI	CTGGAG	1 cut(s)	377
HaeIII	GGCC	3 cut(s)	276, 393, 950
HapII	CCGG	2 cut(s)	368, 839
HhaI	GCGC	2 cut(s)	473, 624
Hin6I	GCGC	2 cut(s)	471, 622
HinP1I	GCGC	2 cut(s)	471, 622
HindIII	AAGCTT	1 cut(s)	494
HinfI	GANTC	1 cut(s)	649
HpaII	CCGG	2 cut(s)	368, 839
HphI	GGTGA	6 cut(s)	461, 556, 617, 737, 868, 952
Hpy166II	GTNNAC	1 cut(s)	235
Hpy188III	TCNNGA	7 cut(s)	67, 220, 324, 482, 695, 782, 839
Hpy8I	GTNNAC	1 cut(s)	235
HpyAV	CCTTC	3 cut(s)	210, 847, 976
HpyCH4III	ACNGT	1 cut(s)	384
HpyCH4V	TGCA	6 cut(s)	61, 137, 524, 532, 804, 825
HpyF10VI	GCNNNNNNNGC	3 cut(s)	95, 153, 521
HpyF3I	CTNAG	3 cut(s)	188, 395, 693
HspAI	GCGC	2 cut(s)	471, 622
Kpn2I	TCCGGA	1 cut(s)	838
Ksp22I	TGATCA	1 cut(s)	484
Kzo9I	GATC	3 cut(s)	196, 484, 667
LmnI	GCTCC	1 cut(s)	462
Lsp1109I	GCAGC	3 cut(s)	165, 328, 485
LweI	GCATC	7 cut(s)	124, 225, 511, 666, 745, 813, 918
MaeI	CTAG	3 cut(s)	170, 230, 932
MaeIII	GTNAC	2 cut(s)	701, 725
MalI	GATC	3 cut(s)	198, 486, 669
MboI	GATC	3 cut(s)	196, 484, 667
MboII	GAAGA	7 cut(s)	17, 44, 53, 56, 662, 770, 854
MfeI	CAATTG	1 cut(s)	138
MhlI	GDGCHC	1 cut(s)	403
MluCI	AATT	5 cut(s)	138, 269, 348, 405, 762
MmeI	TCCRAC	1 cut(s)	700
MnlI	CCTC	9 cut(s)	20, 216, 248, 430, 445, 556, 628, 684, 716
MroI	TCCGGA	1 cut(s)	838
MroXI	GAANNNNTTC	1 cut(s)	834
MseI	TTAA	4 cut(s)	347, 768, 816, 1075
MslI	CAYNNNNRTG	1 cut(s)	941
MspCI	CTTAAG	1 cut(s)	815
MspI	CCGG	2 cut(s)	368, 839
MspR9I	CCNGG	1 cut(s)	368
MunI	CAATTG	1 cut(s)	138
MvnI	CGCG	1 cut(s)	98
MwoI	GCNNNNNNNGC	3 cut(s)	95, 153, 521
NciI	CCSGG	1 cut(s)	368
NcoI	CCATGG	1 cut(s)	148
NdeII	GATC	3 cut(s)	196, 484, 667
NlaIV	GGNNCC	3 cut(s)	227, 277, 381
NmuCI	GTSAC	2 cut(s)	701, 725
NspI	RCATGY	4 cut(s)	53, 536, 642, 733
PagI	TCATGA	1 cut(s)	219
PciI	ACATGT	1 cut(s)	729
PcsI	WCGNNNNNNNCGW	1 cut(s)	789
PdmI	GAANNNNTTC	1 cut(s)	834
PfeI	GAWTC	1 cut(s)	649
PkrI	GCNGC	3 cut(s)	155, 343, 475
PpuMI	RGGWCCY	3 cut(s)	226, 454, 975
PscI	ACATGT	1 cut(s)	729
Psp5II	RGGWCCY	3 cut(s)	226, 454, 975
PspN4I	GGNNCC	3 cut(s)	227, 277, 381
PspPI	GGNCC	5 cut(s)	226, 275, 454, 949, 975
PspPPI	RGGWCCY	3 cut(s)	226, 454, 975
RsaI	GTAC	2 cut(s)	444, 616
RsaNI	GTAC	2 cut(s)	443, 615
RseI	CAYNNNNRTG	1 cut(s)	941
SaqAI	TTAA	4 cut(s)	347, 768, 816, 1075
SatI	GCNGC	3 cut(s)	154, 342, 474
Sau3AI	GATC	3 cut(s)	196, 484, 667
Sau96I	GGNCC	5 cut(s)	226, 275, 454, 949, 975
ScaI	AGTACT	1 cut(s)	616
ScrFI	CCNGG	1 cut(s)	368
SduI	GDGCHC	1 cut(s)	403
SfaNI	GCATC	7 cut(s)	124, 225, 511, 666, 745, 813, 918
SinI	GGWCC	3 cut(s)	226, 454, 975
SmiMI	CAYNNNNRTG	1 cut(s)	941
SmlI	CTYRAG	1 cut(s)	815
SmoI	CTYRAG	1 cut(s)	815
Sse9I	AATT	5 cut(s)	138, 269, 348, 405, 762
SsiI	CCGC	7 cut(s)	98, 214, 542, 600, 706, 872, 899
SspI	AATATT	2 cut(s)	246, 418
SspMI	CTAG	3 cut(s)	170, 230, 932
StyD4I	CCNGG	1 cut(s)	366
StyI	CCWWGG	2 cut(s)	148, 644
TaaI	ACNGT	1 cut(s)	384
TaqI	TCGA	2 cut(s)	403, 879
TasI	AATT	5 cut(s)	138, 269, 348, 405, 762
TatI	WGTACW	2 cut(s)	442, 614
TfiI	GAWTC	1 cut(s)	649
Tru1I	TTAA	4 cut(s)	347, 768, 816, 1075
Tru9I	TTAA	4 cut(s)	347, 768, 816, 1075
TscAI	CASTG	1 cut(s)	435
TseFI	GTSAC	2 cut(s)	701, 725
TseI	GCWGC	3 cut(s)	153, 341, 473
Tsp45I	GTSAC	2 cut(s)	701, 725
TspDTI	ATGAA	4 cut(s)	519, 897, 906, 1031
TspGWI	ACGGA	2 cut(s)	797, 1045
TspRI	CASTG	1 cut(s)	435
Vha464I	CTTAAG	1 cut(s)	815
VpaK11BI	GGWCC	3 cut(s)	226, 454, 975
XapI	RAATTY	1 cut(s)	405
XceI	RCATGY	4 cut(s)	53, 536, 642, 733
XmnI	GAANNNNTTC	1 cut(s)	834
XspI	CTAG	3 cut(s)	170, 230, 932
ZrmI	AGTACT	1 cut(s)	616

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.