Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0002826

Physical Location & Seq

Genomic Coordinates Reverse (-)

40680647 .. 40681997

Gene Structure 1351 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G020360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

ATGGAACATAGACAAAGGGCGCTAACATTGGAACAGAAAGAAGAGGAACAAGCCAAGGTGGAAGTGTGGAAATATGTGTTCGGGTTTTCAAAAATCGCAGTGGTGAAGTGTGCCATTGAGCTTGGAATAGCTGACGCTATTGAAAGCCATAGAAGCCCCATGACACTCTTAGAGCTATCCACAACTCTCAAGTGTGATCCTTCTTCCCTTTACCGCATCATGAGGTTCCTAGTTCACCACCAGATATTCAAAGAAGCCCAACCCAAAATCCCATCAGGCCCCAAAAGTTATACACAAACACCTTTGTCCCGCTGCCTACTAAAATCCAGTCGAAATAGCATGGCTGCATTCATTTTGCTGGAGAGTAGTCCTGTAATGCTAGCACCATGGCATGGCCTTAGTGCCCGTATTCTAGGAAATGGCACTATTACACCCGCATTTGAGGCAGTACATGGTGAGGATATATGGAGCTTTGCAGCGGCTAATCCCGGTCACAGCGAGCTTATCAATGAAGCAATGGCTTGTGATGCAAACTTGGCACTGCCTGCACTGATTGAGAGTTGTTTAGGGGTTTTCAATGGGATTGAGACCATAGTAGATGTGGGTGGTGGTAATGGAACTACTTTAGGCTTGTTGGTTAAGGCCTGTCCTTCGATTGTTCGAGGGATCAATTTTGATCTTCCTCATGTTGTATCTGTTGCTGAGGAGAATGATCGAGTGGAGAATGTTGGAGGAGACATGTTTGATTGTATTCCAAAGGCCGATGCTGCAATTATCAAGTGGGTTCTTCATGATTGGGGAGATGAGGAGTGCATCCGTATACTGAAGAAATGTAAGGAAGCAATTCCTGAGGACAAAGGGAAGGTGATAATTCTGGAAGCTGTTATTGAAGAAGATGAGATCAAAGACGAGCTAACCGATGTGAGATTGATGCTAGATATGGTGATGATGGCCCATACTAGCACTGGCAAAGAGAGGACCTTGAAGGAATGGGGATATGTTCTTGGGGAAGCTGGCTTTAGCCGACACACGGTCACACCTATTAAAGCTGTCCAATCTGTTATCCAGGCTTTTCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0008757 GO:0009058 GO:0009987 GO:0010817 GO:0016740 GO:0016741 GO:0017096 GO:0017144 GO:0018130 GO:0019438 GO:0030186 GO:0030187 GO:0032259 GO:0034641 GO:0034754 GO:0042430 GO:0042435 GO:0042445 GO:0042446 GO:0043603 GO:0043604 GO:0044237 GO:0044249 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0065007 GO:0065008 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dimerisation Methyltransf_2

Protein Analysis

359

Amino Acids

39.52

Weight (kDa)

5.37

Isoelectric Point (pI)

39.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dimerisation	PF08100	23 - 109	7.1e-21	O-methyltransferase dimerisation domain
Methyltransf_2	PF00891	133 - 341	3.4e-47	O-methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002826)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35150 AT4G35160
fragaria_vesca	FvH4_2g15840 FvH4_2g15880 FvH4_2g15880
malus_domestica	MD05G1127400.v1.1 MD05G1127600.v1.1 MD05G1127900.v1.1 MD05G1128000.v1.1 MD05G1128100.v1.1
prunus_persica	Prupe.8G171000_v2.0.a1 Prupe.8G171100_v2.0.a1 Prupe.8G171400_v2.0.a1 Prupe.8G171900_v2.0.a1 Prupe.8G172000_v2.0.a1
pyrus_communis	pycom05g12360 pycom05g12370 pycom05g12400
rosa_chinensis	RchiOBHm_Chr6g0279261 RchiOBHm_Chr6g0279331 RchiOBHm_Chr6g0279441
rosa_laevigata	RLG00000013151 RLG00000013152
rosa_multiflora	Rmu_sc0009584.1_g000002 Rmu_sc0026652.1_g000001
rosa_roxburghii	Rroxscaffold_7G00188960 Rroxscaffold_7G00188980 Rroxscaffold_7G00189010
rosa_rugosa	Rorug06G0124200 Rorug06G0124200
rosa_samantha	Rh6AG232600 Rh6AG232800 Rh6AG233200 Rh6BG237200 Rh6BG237500 Rh6CG239300 Rh6CG239700
rosa_wichuraiana	Rw6G020330 Rw6G020360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	392
AccI	GTMKAC	1 cut(s)	820
AciI	CCGC	4 cut(s)	214, 310, 435, 479
AclWI	GGATC	2 cut(s)	191, 674
AcuI	CTGAAG	1 cut(s)	845
AfaI	GTAC	1 cut(s)	450
AfiI	CCNNNNNNNGG	2 cut(s)	392, 1030
AflIII	ACRYGT	1 cut(s)	738
AgsI	TTSAA	6 cut(s)	90, 143, 250, 577, 890, 985
AhdI	GACNNNNNGTC	1 cut(s)	1031
AjnI	CCWGG	1 cut(s)	1065
AluBI	AGCT	9 cut(s)	121, 131, 175, 471, 502, 881, 913, 1013, 1049
AluI	AGCT	9 cut(s)	121, 131, 175, 471, 502, 881, 913, 1013, 1049
Alw26I	GTCTC	2 cut(s)	581, 729
AlwI	GGATC	2 cut(s)	191, 674
AoxI	GGCC	5 cut(s)	277, 394, 642, 759, 951
ApeKI	GCWGC	4 cut(s)	312, 344, 476, 767
Asp700I	GAANNNNTTC	1 cut(s)	843
AspLEI	GCGC	1 cut(s)	22
AspS9I	GGNCC	3 cut(s)	278, 952, 978
AsuC2I	CCSGG	1 cut(s)	489
AsuHPI	GGTGA	5 cut(s)	115, 227, 467, 877, 955
AsuNHI	GCTAGC	1 cut(s)	379
AvaII	GGWCC	1 cut(s)	978
AxyI	CCTNAGG	1 cut(s)	849
BaeGI	GKGCMC	1 cut(s)	406
BbvCI	CCTCAGC	1 cut(s)	702
BbvI	GCAGC	4 cut(s)	299, 331, 488, 754
BccI	CCATC	2 cut(s)	280, 943
BciT130I	CCWGG	1 cut(s)	1067
BcnI	CCSGG	1 cut(s)	489
BcoDI	GTCTC	2 cut(s)	581, 729
BfaI	CTAG	5 cut(s)	230, 380, 413, 935, 960
BfoI	RGCGCY	1 cut(s)	23
BisI	GCNGC	5 cut(s)	313, 345, 477, 480, 768
BlsI	GCNGC	5 cut(s)	314, 346, 478, 481, 769
Bme1390I	CCNGG	2 cut(s)	489, 1067
Bme18I	GGWCC	1 cut(s)	978
BmeRI	GACNNNNNGTC	1 cut(s)	1031
BmgT120I	GGNCC	3 cut(s)	278, 952, 978
BmiI	GGNNCC	2 cut(s)	227, 280
BmrFI	CCNGG	2 cut(s)	489, 1067
BmsI	GCATC	5 cut(s)	225, 517, 754, 822, 921
BmtI	GCTAGC	1 cut(s)	383
BpmI	CTGGAG	1 cut(s)	380
Bpu10I	CCTNAGC	1 cut(s)	702
BpuEI	CTTGAG	1 cut(s)	173
BpuMI	CCSGG	1 cut(s)	489
BsaI	GGTCTC	1 cut(s)	581
BsaJI	CCNNGG	2 cut(s)	54, 386
Bsc4I	CCNNNNNNNGG	2 cut(s)	392, 1030
Bse1I	ACTGG	2 cut(s)	327, 970
Bse21I	CCTNAGG	1 cut(s)	849
Bse3DI	GCAATG	1 cut(s)	522
BseBI	CCWGG	1 cut(s)	1067
BseDI	CCNNGG	2 cut(s)	54, 386
BseGI	GGATG	1 cut(s)	813
BseLI	CCNNNNNNNGG	2 cut(s)	392, 1030
BseMI	GCAATG	1 cut(s)	522
BseMII	CTCAG	2 cut(s)	693, 840
BseNI	ACTGG	2 cut(s)	327, 970
BseRI	GAGGAG	3 cut(s)	719, 747, 821
BseSI	GKGCMC	1 cut(s)	406
BseXI	GCAGC	4 cut(s)	299, 331, 488, 754
BsgI	GTGCAG	1 cut(s)	531
BshFI	GGCC	5 cut(s)	279, 396, 644, 761, 953
BsiSI	CCGG	1 cut(s)	489
BslFI	GGGAC	1 cut(s)	292
BslI	CCNNNNNNNGG	2 cut(s)	392, 1030
BsmAI	GTCTC	2 cut(s)	581, 729
BsmFI	GGGAC	1 cut(s)	292
BsmI	GAATGC	1 cut(s)	347
BsnI	GGCC	5 cut(s)	279, 396, 644, 761, 953
Bso31I	GGTCTC	1 cut(s)	581
Bsp1286I	GDGCHC	1 cut(s)	406
Bsp143I	GATC	5 cut(s)	196, 666, 676, 712, 900
Bsp19I	CCATGG	1 cut(s)	386
BspACI	CCGC	4 cut(s)	214, 310, 435, 479
BspANI	GGCC	5 cut(s)	279, 396, 644, 761, 953
BspCNI	CTCAG	2 cut(s)	694, 841
BspHI	TCATGA	2 cut(s)	219, 790
BspLI	GGNNCC	2 cut(s)	227, 280
BspOI	GCTAGC	1 cut(s)	383
BspPI	GGATC	2 cut(s)	191, 674
BspTNI	GGTCTC	1 cut(s)	581
BsrDI	GCAATG	1 cut(s)	522
BsrI	ACTGG	2 cut(s)	327, 970
BssECI	CCNNGG	2 cut(s)	54, 386
BssMI	GATC	5 cut(s)	196, 666, 676, 712, 900
BssNAI	GTATAC	1 cut(s)	821
BssT1I	CCWWGG	2 cut(s)	54, 386
Bst1107I	GTATAC	1 cut(s)	821
Bst2UI	CCWGG	1 cut(s)	1067
Bst4CI	ACNGT	1 cut(s)	1033
Bst6I	CTCTTC	1 cut(s)	36
BstAPI	GCANNNNNTGC	1 cut(s)	545
BstC8I	GCNNGC	4 cut(s)	381, 500, 546, 1015
BstDEI	CTNAG	4 cut(s)	169, 398, 702, 849
BstDSI	CCRYGG	1 cut(s)	386
BstF5I	GGATG	1 cut(s)	813
BstH2I	RGCGCY	1 cut(s)	23
BstHHI	GCGC	1 cut(s)	22
BstKTI	GATC	5 cut(s)	199, 669, 679, 715, 903
BstMAI	GTCTC	2 cut(s)	581, 729
BstMBI	GATC	5 cut(s)	196, 666, 676, 712, 900
BstMWI	GCNNNNNNNGC	6 cut(s)	153, 443, 527, 536, 545, 767
BstNI	CCWGG	1 cut(s)	1067
BstNSI	RCATGY	1 cut(s)	742
BstSCI	CCNGG	2 cut(s)	487, 1065
BstSLI	GKGCMC	1 cut(s)	406
BstV1I	GCAGC	4 cut(s)	299, 331, 488, 754
BstZ17I	GTATAC	1 cut(s)	821
Bsu36I	CCTNAGG	1 cut(s)	849
BsuRI	GGCC	5 cut(s)	279, 396, 644, 761, 953
BtgI	CCRYGG	1 cut(s)	386
BtsCI	GGATG	1 cut(s)	813
BtsI	GCAGTG	2 cut(s)	105, 539
BtsIMutI	CAGTG	4 cut(s)	105, 539, 548, 963
Cac8I	GCNNGC	4 cut(s)	381, 500, 546, 1015
CciI	TCATGA	2 cut(s)	219, 790
CfoI	GCGC	1 cut(s)	22
Cfr13I	GGNCC	3 cut(s)	278, 952, 978
CseI	GACGC	1 cut(s)	143
Csp6I	GTAC	1 cut(s)	449
CviAII	CATG	9 cut(s)	160, 220, 340, 387, 392, 452, 686, 739, 791
CviQI	GTAC	1 cut(s)	449
DdeI	CTNAG	4 cut(s)	169, 398, 702, 849
DpnI	GATC	5 cut(s)	198, 668, 678, 714, 902
DpnII	GATC	5 cut(s)	196, 666, 676, 712, 900
DriI	GACNNNNNGTC	1 cut(s)	1031
Eam1104I	CTCTTC	1 cut(s)	36
Eam1105I	GACNNNNNGTC	1 cut(s)	1031
EarI	CTCTTC	1 cut(s)	36
Eco130I	CCWWGG	2 cut(s)	54, 386
Eco147I	AGGCCT	1 cut(s)	644
Eco31I	GGTCTC	1 cut(s)	581
Eco47I	GGWCC	1 cut(s)	978
Eco57I	CTGAAG	1 cut(s)	845
Eco81I	CCTNAGG	1 cut(s)	849
EcoO109I	RGGNCCY	2 cut(s)	278, 978
EcoRII	CCWGG	1 cut(s)	1065
EcoT14I	CCWWGG	2 cut(s)	54, 386
ErhI	CCWWGG	2 cut(s)	54, 386
FaeI	CATG	9 cut(s)	163, 223, 343, 390, 395, 455, 689, 742, 794
FaqI	GGGAC	1 cut(s)	292
FatI	CATG	9 cut(s)	159, 219, 339, 386, 391, 451, 685, 738, 790
FauI	CCCGC	2 cut(s)	317, 442
FblI	GTMKAC	1 cut(s)	820
Fnu4HI	GCNGC	5 cut(s)	313, 345, 477, 480, 768
FokI	GGATG	1 cut(s)	800
Fsp4HI	GCNGC	5 cut(s)	313, 345, 477, 480, 768
FspBI	CTAG	5 cut(s)	230, 380, 413, 935, 960
GlaI	GCGC	1 cut(s)	21
GluI	GCNGC	5 cut(s)	313, 345, 477, 480, 768
GsuI	CTGGAG	1 cut(s)	380
HaeII	RGCGCY	1 cut(s)	23
HaeIII	GGCC	5 cut(s)	279, 396, 644, 761, 953
HapII	CCGG	1 cut(s)	489
HgaI	GACGC	1 cut(s)	143
HhaI	GCGC	1 cut(s)	22
Hin1II	CATG	9 cut(s)	163, 223, 343, 390, 395, 455, 689, 742, 794
Hin6I	GCGC	1 cut(s)	20
HinP1I	GCGC	1 cut(s)	20
HpaII	CCGG	1 cut(s)	489
HphI	GGTGA	5 cut(s)	115, 227, 467, 877, 955
Hpy166II	GTNNAC	2 cut(s)	235, 821
Hpy188III	TCNNGA	4 cut(s)	220, 791, 848, 875
Hpy8I	GTNNAC	2 cut(s)	235, 821
HpyAV	CCTTC	4 cut(s)	210, 660, 856, 979
HpyCH4III	ACNGT	1 cut(s)	1033
HpyCH4V	TGCA	6 cut(s)	347, 476, 530, 548, 770, 813
HpyF10VI	GCNNNNNNNGC	6 cut(s)	153, 443, 527, 536, 545, 767
HpyF3I	CTNAG	4 cut(s)	169, 398, 702, 849
Hsp92II	CATG	9 cut(s)	163, 223, 343, 390, 395, 455, 689, 742, 794
HspAI	GCGC	1 cut(s)	20
Kzo9I	GATC	5 cut(s)	196, 666, 676, 712, 900
LmnI	GCTCC	1 cut(s)	468
Lsp1109I	GCAGC	4 cut(s)	299, 331, 488, 754
LweI	GCATC	5 cut(s)	225, 517, 754, 822, 921
MaeI	CTAG	5 cut(s)	230, 380, 413, 935, 960
MaeIII	GTNAC	2 cut(s)	491, 1033
MalI	GATC	5 cut(s)	198, 668, 678, 714, 902
MboI	GATC	5 cut(s)	196, 666, 676, 712, 900
MboII	GAAGA	7 cut(s)	53, 195, 671, 779, 838, 902, 905
MhlI	GDGCHC	1 cut(s)	406
MluCI	AATT	4 cut(s)	670, 771, 843, 870
MmeI	TCCRAC	1 cut(s)	709
MroXI	GAANNNNTTC	1 cut(s)	843
MseI	TTAA	2 cut(s)	639, 1044
MspA1I	CMGCKG	2 cut(s)	312, 479
MspI	CCGG	1 cut(s)	489
MspR9I	CCNGG	2 cut(s)	489, 1067
Mva1269I	GAATGC	1 cut(s)	347
MvaI	CCWGG	1 cut(s)	1067
MwoI	GCNNNNNNNGC	6 cut(s)	153, 443, 527, 536, 545, 767
NciI	CCSGG	1 cut(s)	489
NcoI	CCATGG	1 cut(s)	386
NdeII	GATC	5 cut(s)	196, 666, 676, 712, 900
NheI	GCTAGC	1 cut(s)	379
NlaIII	CATG	9 cut(s)	163, 223, 343, 390, 395, 455, 689, 742, 794
NlaIV	GGNNCC	2 cut(s)	227, 280
NmuCI	GTSAC	2 cut(s)	491, 1033
NspI	RCATGY	1 cut(s)	742
PagI	TCATGA	2 cut(s)	219, 790
PceI	AGGCCT	1 cut(s)	644
PciI	ACATGT	1 cut(s)	738
PcsI	WCGNNNNNNNCGW	1 cut(s)	915
PctI	GAATGC	1 cut(s)	347
PdmI	GAANNNNTTC	1 cut(s)	843
PflMI	CCANNNNNTGG	1 cut(s)	392
PkrI	GCNGC	5 cut(s)	314, 346, 478, 481, 769
PpuMI	RGGWCCY	1 cut(s)	978
PscI	ACATGT	1 cut(s)	738
Psp5II	RGGWCCY	1 cut(s)	978
Psp6I	CCWGG	1 cut(s)	1065
PspGI	CCWGG	1 cut(s)	1065
PspN4I	GGNNCC	2 cut(s)	227, 280
PspPI	GGNCC	3 cut(s)	278, 952, 978
PspPPI	RGGWCCY	1 cut(s)	978
RsaI	GTAC	1 cut(s)	450
RsaNI	GTAC	1 cut(s)	449
SaqAI	TTAA	2 cut(s)	639, 1044
SatI	GCNGC	5 cut(s)	313, 345, 477, 480, 768
Sau3AI	GATC	5 cut(s)	196, 666, 676, 712, 900
Sau96I	GGNCC	3 cut(s)	278, 952, 978
ScrFI	CCNGG	2 cut(s)	489, 1067
SduI	GDGCHC	1 cut(s)	406
SfaNI	GCATC	5 cut(s)	225, 517, 754, 822, 921
SinI	GGWCC	1 cut(s)	978
SmlI	CTYRAG	1 cut(s)	188
SmoI	CTYRAG	1 cut(s)	188
Sse9I	AATT	4 cut(s)	670, 771, 843, 870
SseBI	AGGCCT	1 cut(s)	644
SsiI	CCGC	4 cut(s)	214, 310, 435, 479
SspMI	CTAG	5 cut(s)	230, 380, 413, 935, 960
StuI	AGGCCT	1 cut(s)	644
StyD4I	CCNGG	2 cut(s)	487, 1065
StyI	CCWWGG	2 cut(s)	54, 386
TaaI	ACNGT	1 cut(s)	1033
TaqI	TCGA	4 cut(s)	331, 653, 661, 715
TasI	AATT	4 cut(s)	670, 771, 843, 870
TatI	WGTACW	1 cut(s)	448
TauI	GCSGC	1 cut(s)	482
Tru1I	TTAA	2 cut(s)	639, 1044
Tru9I	TTAA	2 cut(s)	639, 1044
TscAI	CASTG	4 cut(s)	105, 546, 555, 970
TseFI	GTSAC	2 cut(s)	491, 1033
TseI	GCWGC	4 cut(s)	312, 344, 476, 767
Tsp45I	GTSAC	2 cut(s)	491, 1033
TspDTI	ATGAA	3 cut(s)	340, 525, 779
TspGWI	ACGGA	1 cut(s)	806
TspRI	CASTG	4 cut(s)	105, 546, 555, 970
Van91I	CCANNNNNTGG	1 cut(s)	392
VpaK11BI	GGWCC	1 cut(s)	978
XceI	RCATGY	1 cut(s)	742
XcmI	CCANNNNNNNNNTGG	2 cut(s)	598, 962
XmiI	GTMKAC	1 cut(s)	820
XmnI	GAANNNNTTC	1 cut(s)	843
XspI	CTAG	5 cut(s)	230, 380, 413, 935, 960

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.