Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0002826

Physical Location & Seq

Genomic Coordinates Forward (+)

28722754 .. 28724058

Gene Structure 1305 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00188960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGGAAGAGAAAGGAGACGAACGTGCCAAAGTGGAAGTGTGGAATTATGTGCTTGGGTTTTCAAAAATTGCAGTGGTAAAATGTGCCATTGAGCTCGGAATAGCTGATGCTATTGAAAGCCATGGAAGCCCCATGACACTCTTAGAGCTATCCAAAACTCTCAAGTGCGATCCTTCTTCCCTTTACCGCATCATGAGGTTCCTAGTTCACCAGAAAATATTCAAAGAAGTCCAACCCAAAATCCCATCAGGCCCCAAAATTTATGCACAATCACCTTTGTCCCGCTGCCTACTAAAATCCGGTGGAAATAGCATGGCTGCATTGATTTTGCTGGAGAGTAGTCCGGTAATGCTAGCATCATGGCATGGCCTTAGTGCCCGTATTCTAGGCAATGGCACCAGTACTCCCGCATTTGAGGCAGTACATGGTGAGGATTTATGGAGCTTTGCAGCGGCTAATCCCGGTCACAGCAAGCTTATCAATGAAGCAATGGCTTGTGATGCAAGCTTGGCACTGCCTGCACTGATTGAGAGTTGTTCAGAGGTTTTCAATGGGATTGAGACCATAGTGGATGTGGGTGGTGGTAATGGAACTACTTTAGGCATTTTGGTTAAGGCCTGTCCTTGGATTACTCGAGGGATCAATTTTGATCTTCCTCATGTTGTATCTGTTGCTGAGGAGAGTGATCGAGTGGAGAATGTTGGAGGAGACATGTTTGATTGTATTCCAAAGGCCGATGCTGCAATTATCAAATGGGTTCTTCATGATTGGGGAGATGAGGAGTGCATCCGTATACTGAAGAAATGTAAGGAAGCAATTCCTGAGGACAAAGGGAAGGTGATAATTCTGGAAGCTGTTATTGAAGAAGATGAGATCAAAGACGAGCTAACCGATGTGAGATTGATGCTAGACATGGTGATGATGGCTCATACTAGCACTGGCAAAGAGAGGACCTTGAAGGAATGGGGATATGTTCTTGGGGAAGCTGGCTTTAGCCGATACACGGTCACACCTATTAATGCTGTCCAATCTGTTATCCAGGCTTTTCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0008757 GO:0009058 GO:0009987 GO:0010817 GO:0016740 GO:0016741 GO:0017096 GO:0017144 GO:0018130 GO:0019438 GO:0030186 GO:0030187 GO:0032259 GO:0034641 GO:0034754 GO:0042430 GO:0042435 GO:0042445 GO:0042446 GO:0043603 GO:0043604 GO:0044237 GO:0044249 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0065007 GO:0065008 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dimerisation Methyltransf_2

Protein Analysis

350

Amino Acids

38.14

Weight (kDa)

5.1

Isoelectric Point (pI)

37.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dimerisation	PF08100	14 - 100	2.3e-19	O-methyltransferase dimerisation domain
Methyltransf_2	PF00891	121 - 332	5.5e-48	O-methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002826)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35150 AT4G35160
fragaria_vesca	FvH4_2g15840 FvH4_2g15880 FvH4_2g15880
malus_domestica	MD05G1127400.v1.1 MD05G1127600.v1.1 MD05G1127900.v1.1 MD05G1128000.v1.1 MD05G1128100.v1.1
prunus_persica	Prupe.8G171000_v2.0.a1 Prupe.8G171100_v2.0.a1 Prupe.8G171400_v2.0.a1 Prupe.8G171900_v2.0.a1 Prupe.8G172000_v2.0.a1
pyrus_communis	pycom05g12360 pycom05g12370 pycom05g12400
rosa_chinensis	RchiOBHm_Chr6g0279261 RchiOBHm_Chr6g0279331 RchiOBHm_Chr6g0279441
rosa_laevigata	RLG00000013151 RLG00000013152
rosa_multiflora	Rmu_sc0009584.1_g000002 Rmu_sc0026652.1_g000001
rosa_roxburghii	Rroxscaffold_7G00188960 Rroxscaffold_7G00188980 Rroxscaffold_7G00189010
rosa_rugosa	Rorug06G0124200 Rorug06G0124200
rosa_samantha	Rh6AG232600 Rh6AG232800 Rh6AG233200 Rh6BG237200 Rh6BG237500 Rh6CG239300 Rh6CG239700
rosa_wichuraiana	Rw6G020330 Rw6G020360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	395
AccI	GTMKAC	1 cut(s)	793
AciI	CCGC	4 cut(s)	187, 283, 408, 452
AclWI	GGATC	2 cut(s)	164, 647
AcsI	RAATTY	1 cut(s)	258
AcuI	CTGAAG	1 cut(s)	818
AfaI	GTAC	2 cut(s)	403, 423
AfiI	CCNNNNNNNGG	2 cut(s)	624, 1003
AflIII	ACRYGT	1 cut(s)	711
AgsI	TTSAA	6 cut(s)	63, 116, 223, 550, 863, 958
AjnI	CCWGG	1 cut(s)	1038
AluBI	AGCT	9 cut(s)	94, 104, 148, 444, 475, 507, 854, 886, 986
AluI	AGCT	9 cut(s)	94, 104, 148, 444, 475, 507, 854, 886, 986
Alw21I	GWGCWC	1 cut(s)	96
Alw26I	GTCTC	3 cut(s)	9, 554, 702
AlwI	GGATC	2 cut(s)	164, 647
Ama87I	CYCGRG	1 cut(s)	633
AoxI	GGCC	4 cut(s)	250, 367, 615, 732
ApeKI	GCWGC	4 cut(s)	285, 317, 449, 740
ApoI	RAATTY	1 cut(s)	258
AseI	ATTAAT	1 cut(s)	1017
Asp700I	GAANNNNTTC	2 cut(s)	218, 816
AspS9I	GGNCC	2 cut(s)	251, 951
AsuC2I	CCSGG	1 cut(s)	462
AsuHPI	GGTGA	5 cut(s)	200, 264, 440, 850, 928
AsuNHI	GCTAGC	1 cut(s)	352
AvaI	CYCGRG	1 cut(s)	633
AvaII	GGWCC	1 cut(s)	951
AxyI	CCTNAGG	1 cut(s)	822
BaeGI	GKGCMC	1 cut(s)	379
BanI	GGYRCC	1 cut(s)	395
BanII	GRGCYC	1 cut(s)	96
Bbv12I	GWGCWC	1 cut(s)	96
BbvCI	CCTCAGC	1 cut(s)	675
BbvI	GCAGC	4 cut(s)	272, 304, 461, 727
BccI	CCATC	2 cut(s)	253, 916
BciT130I	CCWGG	1 cut(s)	1040
BcnI	CCSGG	1 cut(s)	462
BcoDI	GTCTC	3 cut(s)	9, 554, 702
BfaI	CTAG	5 cut(s)	203, 353, 386, 908, 933
BisI	GCNGC	5 cut(s)	286, 318, 450, 453, 741
BlsI	GCNGC	5 cut(s)	287, 319, 451, 454, 742
BmcAI	AGTACT	1 cut(s)	403
Bme1390I	CCNGG	2 cut(s)	462, 1040
Bme18I	GGWCC	1 cut(s)	951
BmeT110I	CYCGRG	1 cut(s)	633
BmgT120I	GGNCC	2 cut(s)	251, 951
BmiI	GGNNCC	3 cut(s)	200, 253, 397
BmrFI	CCNGG	2 cut(s)	462, 1040
BmsI	GCATC	7 cut(s)	97, 198, 365, 490, 727, 795, 894
BmtI	GCTAGC	1 cut(s)	356
BpmI	CTGGAG	1 cut(s)	353
Bpu10I	CCTNAGC	1 cut(s)	675
BpuEI	CTTGAG	1 cut(s)	146
BpuMI	CCSGG	1 cut(s)	462
BsaI	GGTCTC	1 cut(s)	554
BsaJI	CCNNGG	2 cut(s)	121, 623
BsaWI	WCCGGW	2 cut(s)	299, 343
BsaXI	ACNNNNNCTCC	2 cut(s)	388, 418
Bsc4I	CCNNNNNNNGG	2 cut(s)	624, 1003
Bse1I	ACTGG	2 cut(s)	399, 943
Bse21I	CCTNAGG	1 cut(s)	822
Bse3DI	GCAATG	2 cut(s)	397, 495
BseBI	CCWGG	1 cut(s)	1040
BseDI	CCNNGG	2 cut(s)	121, 623
BseGI	GGATG	2 cut(s)	577, 786
BseLI	CCNNNNNNNGG	2 cut(s)	624, 1003
BseMI	GCAATG	2 cut(s)	397, 495
BseMII	CTCAG	2 cut(s)	666, 813
BseNI	ACTGG	2 cut(s)	399, 943
BseRI	GAGGAG	3 cut(s)	692, 720, 794
BseSI	GKGCMC	1 cut(s)	379
BseXI	GCAGC	4 cut(s)	272, 304, 461, 727
BsgI	GTGCAG	1 cut(s)	504
BshFI	GGCC	4 cut(s)	252, 369, 617, 734
BshNI	GGYRCC	1 cut(s)	395
BsiHKAI	GWGCWC	1 cut(s)	96
BsiHKCI	CYCGRG	1 cut(s)	633
BsiSI	CCGG	3 cut(s)	300, 344, 462
BslFI	GGGAC	1 cut(s)	265
BslI	CCNNNNNNNGG	2 cut(s)	624, 1003
BsmAI	GTCTC	3 cut(s)	9, 554, 702
BsmBI	CGTCTC	1 cut(s)	9
BsmFI	GGGAC	1 cut(s)	265
BsnI	GGCC	4 cut(s)	252, 369, 617, 734
Bso31I	GGTCTC	1 cut(s)	554
BsoBI	CYCGRG	1 cut(s)	633
Bsp1286I	GDGCHC	2 cut(s)	96, 379
Bsp143I	GATC	5 cut(s)	169, 639, 649, 685, 873
Bsp19I	CCATGG	1 cut(s)	121
BspACI	CCGC	4 cut(s)	187, 283, 408, 452
BspANI	GGCC	4 cut(s)	252, 369, 617, 734
BspCNI	CTCAG	2 cut(s)	667, 814
BspHI	TCATGA	2 cut(s)	192, 763
BspLI	GGNNCC	3 cut(s)	200, 253, 397
BspOI	GCTAGC	1 cut(s)	356
BspPI	GGATC	2 cut(s)	164, 647
BspT107I	GGYRCC	1 cut(s)	395
BspTNI	GGTCTC	1 cut(s)	554
BsrDI	GCAATG	2 cut(s)	397, 495
BsrI	ACTGG	2 cut(s)	399, 943
BssECI	CCNNGG	2 cut(s)	121, 623
BssMI	GATC	5 cut(s)	169, 639, 649, 685, 873
BssNAI	GTATAC	1 cut(s)	794
BssT1I	CCWWGG	2 cut(s)	121, 623
Bst1107I	GTATAC	1 cut(s)	794
Bst2UI	CCWGG	1 cut(s)	1040
Bst4CI	ACNGT	1 cut(s)	1006
BstAPI	GCANNNNNTGC	1 cut(s)	518
BstC8I	GCNNGC	5 cut(s)	354, 473, 505, 519, 988
BstDEI	CTNAG	4 cut(s)	142, 371, 675, 822
BstDSI	CCRYGG	1 cut(s)	121
BstF5I	GGATG	2 cut(s)	577, 786
BstKTI	GATC	5 cut(s)	172, 642, 652, 688, 876
BstMAI	GTCTC	3 cut(s)	9, 554, 702
BstMBI	GATC	5 cut(s)	169, 639, 649, 685, 873
BstMWI	GCNNNNNNNGC	6 cut(s)	126, 416, 500, 509, 518, 740
BstNI	CCWGG	1 cut(s)	1040
BstNSI	RCATGY	1 cut(s)	715
BstSCI	CCNGG	2 cut(s)	460, 1038
BstSLI	GKGCMC	1 cut(s)	379
BstV1I	GCAGC	4 cut(s)	272, 304, 461, 727
BstZ17I	GTATAC	1 cut(s)	794
Bsu36I	CCTNAGG	1 cut(s)	822
BsuRI	GGCC	4 cut(s)	252, 369, 617, 734
BtgI	CCRYGG	1 cut(s)	121
BtsCI	GGATG	2 cut(s)	577, 786
BtsI	GCAGTG	2 cut(s)	78, 512
BtsIMutI	CAGTG	4 cut(s)	78, 512, 521, 936
Cac8I	GCNNGC	5 cut(s)	354, 473, 505, 519, 988
CciI	TCATGA	2 cut(s)	192, 763
Cfr13I	GGNCC	2 cut(s)	251, 951
Csp6I	GTAC	2 cut(s)	402, 422
CviQI	GTAC	2 cut(s)	402, 422
DdeI	CTNAG	4 cut(s)	142, 371, 675, 822
DpnI	GATC	5 cut(s)	171, 641, 651, 687, 875
DpnII	GATC	5 cut(s)	169, 639, 649, 685, 873
Ecl136II	GAGCTC	1 cut(s)	94
Eco130I	CCWWGG	2 cut(s)	121, 623
Eco147I	AGGCCT	1 cut(s)	617
Eco24I	GRGCYC	1 cut(s)	96
Eco31I	GGTCTC	1 cut(s)	554
Eco47I	GGWCC	1 cut(s)	951
Eco53kI	GAGCTC	1 cut(s)	94
Eco57I	CTGAAG	1 cut(s)	818
Eco81I	CCTNAGG	1 cut(s)	822
Eco88I	CYCGRG	1 cut(s)	633
EcoICRI	GAGCTC	1 cut(s)	94
EcoO109I	RGGNCCY	2 cut(s)	251, 951
EcoRII	CCWGG	1 cut(s)	1038
EcoT14I	CCWWGG	2 cut(s)	121, 623
EcoT38I	GRGCYC	1 cut(s)	96
ErhI	CCWWGG	2 cut(s)	121, 623
Esp3I	CGTCTC	1 cut(s)	9
FaqI	GGGAC	1 cut(s)	265
FauI	CCCGC	2 cut(s)	290, 415
FblI	GTMKAC	1 cut(s)	793
Fnu4HI	GCNGC	5 cut(s)	286, 318, 450, 453, 741
FokI	GGATG	2 cut(s)	584, 773
FriOI	GRGCYC	1 cut(s)	96
Fsp4HI	GCNGC	5 cut(s)	286, 318, 450, 453, 741
FspBI	CTAG	5 cut(s)	203, 353, 386, 908, 933
GluI	GCNGC	5 cut(s)	286, 318, 450, 453, 741
GsuI	CTGGAG	1 cut(s)	353
HaeIII	GGCC	4 cut(s)	252, 369, 617, 734
HapII	CCGG	3 cut(s)	300, 344, 462
HindIII	AAGCTT	2 cut(s)	473, 505
HpaII	CCGG	3 cut(s)	300, 344, 462
HphI	GGTGA	5 cut(s)	200, 264, 440, 850, 928
Hpy166II	GTNNAC	2 cut(s)	208, 794
Hpy188I	TCNGA	2 cut(s)	98, 541
Hpy188III	TCNNGA	4 cut(s)	193, 764, 821, 848
Hpy8I	GTNNAC	2 cut(s)	208, 794
HpyAV	CCTTC	3 cut(s)	183, 829, 952
HpyCH4III	ACNGT	1 cut(s)	1006
HpyCH4IV	ACGT	1 cut(s)	22
HpyCH4V	TGCA	8 cut(s)	71, 266, 320, 449, 503, 521, 743, 786
HpyF10VI	GCNNNNNNNGC	6 cut(s)	126, 416, 500, 509, 518, 740
HpyF3I	CTNAG	4 cut(s)	142, 371, 675, 822
HpySE526I	ACGT	1 cut(s)	22
Kzo9I	GATC	5 cut(s)	169, 639, 649, 685, 873
LmnI	GCTCC	1 cut(s)	441
Lsp1109I	GCAGC	4 cut(s)	272, 304, 461, 727
LweI	GCATC	7 cut(s)	97, 198, 365, 490, 727, 795, 894
MaeI	CTAG	5 cut(s)	203, 353, 386, 908, 933
MaeII	ACGT	1 cut(s)	22
MaeIII	GTNAC	2 cut(s)	464, 1006
MalI	GATC	5 cut(s)	171, 641, 651, 687, 875
MboI	GATC	5 cut(s)	169, 639, 649, 685, 873
MboII	GAAGA	7 cut(s)	17, 168, 644, 752, 811, 875, 878
MhlI	GDGCHC	2 cut(s)	96, 379
MluCI	AATT	7 cut(s)	43, 66, 258, 643, 744, 816, 843
MmeI	TCCRAC	2 cut(s)	256, 682
MroXI	GAANNNNTTC	2 cut(s)	218, 816
MseI	TTAA	2 cut(s)	612, 1017
MslI	CAYNNNNRTG	1 cut(s)	917
MspA1I	CMGCKG	2 cut(s)	285, 452
MspI	CCGG	3 cut(s)	300, 344, 462
MspR9I	CCNGG	2 cut(s)	462, 1040
MvaI	CCWGG	1 cut(s)	1040
MwoI	GCNNNNNNNGC	6 cut(s)	126, 416, 500, 509, 518, 740
NciI	CCSGG	1 cut(s)	462
NcoI	CCATGG	1 cut(s)	121
NdeII	GATC	5 cut(s)	169, 639, 649, 685, 873
NheI	GCTAGC	1 cut(s)	352
NlaIV	GGNNCC	3 cut(s)	200, 253, 397
NmuCI	GTSAC	2 cut(s)	464, 1006
NspI	RCATGY	1 cut(s)	715
PaeR7I	CTCGAG	1 cut(s)	633
PagI	TCATGA	2 cut(s)	192, 763
PceI	AGGCCT	1 cut(s)	617
PciI	ACATGT	1 cut(s)	711
PcsI	WCGNNNNNNNCGW	1 cut(s)	888
PdmI	GAANNNNTTC	2 cut(s)	218, 816
PkrI	GCNGC	5 cut(s)	287, 319, 451, 454, 742
PpuMI	RGGWCCY	1 cut(s)	951
PscI	ACATGT	1 cut(s)	711
PshBI	ATTAAT	1 cut(s)	1017
Psp124BI	GAGCTC	1 cut(s)	96
Psp5II	RGGWCCY	1 cut(s)	951
Psp6I	CCWGG	1 cut(s)	1038
PspGI	CCWGG	1 cut(s)	1038
PspN4I	GGNNCC	3 cut(s)	200, 253, 397
PspPI	GGNCC	2 cut(s)	251, 951
PspPPI	RGGWCCY	1 cut(s)	951
PspXI	VCTCGAGB	1 cut(s)	633
RsaI	GTAC	2 cut(s)	403, 423
RsaNI	GTAC	2 cut(s)	402, 422
RseI	CAYNNNNRTG	1 cut(s)	917
SacI	GAGCTC	1 cut(s)	96
SaqAI	TTAA	2 cut(s)	612, 1017
SatI	GCNGC	5 cut(s)	286, 318, 450, 453, 741
Sau3AI	GATC	5 cut(s)	169, 639, 649, 685, 873
Sau96I	GGNCC	2 cut(s)	251, 951
ScaI	AGTACT	1 cut(s)	403
ScrFI	CCNGG	2 cut(s)	462, 1040
SduI	GDGCHC	2 cut(s)	96, 379
SfaNI	GCATC	7 cut(s)	97, 198, 365, 490, 727, 795, 894
Sfr274I	CTCGAG	1 cut(s)	633
SinI	GGWCC	1 cut(s)	951
SlaI	CTCGAG	1 cut(s)	633
SmiMI	CAYNNNNRTG	1 cut(s)	917
SmlI	CTYRAG	2 cut(s)	161, 633
SmoI	CTYRAG	2 cut(s)	161, 633
Sse9I	AATT	7 cut(s)	43, 66, 258, 643, 744, 816, 843
SseBI	AGGCCT	1 cut(s)	617
SsiI	CCGC	4 cut(s)	187, 283, 408, 452
SspI	AATATT	1 cut(s)	219
SspMI	CTAG	5 cut(s)	203, 353, 386, 908, 933
SstI	GAGCTC	1 cut(s)	96
StuI	AGGCCT	1 cut(s)	617
StyD4I	CCNGG	2 cut(s)	460, 1038
StyI	CCWWGG	2 cut(s)	121, 623
TaaI	ACNGT	1 cut(s)	1006
TaiI	ACGT	1 cut(s)	25
TaqI	TCGA	2 cut(s)	634, 688
TasI	AATT	7 cut(s)	43, 66, 258, 643, 744, 816, 843
TatI	WGTACW	2 cut(s)	401, 421
TauI	GCSGC	1 cut(s)	455
Tru1I	TTAA	2 cut(s)	612, 1017
Tru9I	TTAA	2 cut(s)	612, 1017
TscAI	CASTG	4 cut(s)	78, 519, 528, 943
TseFI	GTSAC	2 cut(s)	464, 1006
TseI	GCWGC	4 cut(s)	285, 317, 449, 740
Tsp45I	GTSAC	2 cut(s)	464, 1006
TspDTI	ATGAA	2 cut(s)	498, 752
TspGWI	ACGGA	1 cut(s)	779
TspRI	CASTG	4 cut(s)	78, 519, 528, 943
VpaK11BI	GGWCC	1 cut(s)	951
VspI	ATTAAT	1 cut(s)	1017
XapI	RAATTY	1 cut(s)	258
XceI	RCATGY	1 cut(s)	715
XcmI	CCANNNNNNNNNTGG	1 cut(s)	571
XhoI	CTCGAG	1 cut(s)	633
XmiI	GTMKAC	1 cut(s)	793
XmnI	GAANNNNTTC	2 cut(s)	218, 816
XspI	CTAG	5 cut(s)	203, 353, 386, 908, 933
ZrmI	AGTACT	1 cut(s)	403

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.