Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0002826

Physical Location & Seq

Genomic Coordinates Reverse (-)

17522640 .. 17524802

Gene Structure 2163 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G171000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

ATGGAAGATAAACAAAGAGAGTTAGGAGGAGAAGAGAAAGAAGAAGAACATGCCAAACTGGAAATCTGGAAATATGTGTTCGGGTTTGTCGAAATCGCAGTGGTAAAATGTGCCATTCAGCTTGGAATAGCTGATGCAATTGAAAGCCATGGCAGCCCCATGACACTCCTAGAGCTATCATCTGCTCTGAGATGCGATCCTTCTCCCCTTTACCGCATCATGAGGGTCCTAGTCCACCTCAAAATATTCAAAGAAAAACCAGCAACCCAATTAGGCCCAAAAGTTTATGCACAAACACCTTTGTCCAAATGGCTATTGAAATCCGGAAAAAACAGCATGGCTGCTTTAATTTTGCTAGAGAGTAGCCCGGTAATGCTGGCACCATGGCATGGCCTCAGTGCCCGAATCCAAGGTGTTAACAACTCGGCATTCGAGGCAGTACATGGAGAGGATGTGTGGAGCTATGCCGCGGCCAATCCTAATCACAGCAAGCTCATCAATGAAGCAATGGCTTGTGATGCAAGGGTGGCTGTGCCTGCTGTGCTTGAAAGCTGTTTAGAGGTGTTCAAAGGGCTCGAGACAATTGTAGATGTGGGTGGGGGTGACGGGACTACTTTGCGCTTGTTGGTCGAGGCGTGCCCTTGGATTCGAGGCATCAATTTTGATCTTCCTCATGTTGTGTCTGTTGCTCAAGAGTGTGATCGCATTGAGAATGTTGGGGGTGACATGTTTGATTGTGTTCCAAAGGCTGATGCTGCAATTATCATGTGGGTTCTTCATGACTGGGGAGACGATGAGTGCATCCGTATCCTTAAGAAGTGCAGGGAAGCTGTTCCGGAGGACAAAGGGCAGGTGATAATAGTAGAAGCTGTAATTGAAGAAGACAATGAAAAACAAGACAAGAAGCTAACAAATGTGAGATTGATGCTAGATATGGTGATGATGGCCCATACAAACACAGGCAAAGAAAGGACCATGAAAGAATGGGGATATGTTCTTGGTGAGGCTGGCTTTAGCCGACACACTATCACTCCCATTCATGCTGTCCAATCTGTTATCCAAGCTTTTCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0008757 GO:0009058 GO:0009987 GO:0010817 GO:0016740 GO:0016741 GO:0017096 GO:0017144 GO:0018130 GO:0019438 GO:0030186 GO:0030187 GO:0032259 GO:0034641 GO:0034754 GO:0042430 GO:0042435 GO:0042445 GO:0042446 GO:0043603 GO:0043604 GO:0044237 GO:0044249 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0065007 GO:0065008 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dimerisation Methyltransf_2

Protein Analysis

358

Amino Acids

39.55

Weight (kDa)

5.3

Isoelectric Point (pI)

38.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002826)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35150 AT4G35160
fragaria_vesca	FvH4_2g15840 FvH4_2g15880 FvH4_2g15880
malus_domestica	MD05G1127400.v1.1 MD05G1127600.v1.1 MD05G1127900.v1.1 MD05G1128000.v1.1 MD05G1128100.v1.1
prunus_persica	Prupe.8G171000_v2.0.a1 Prupe.8G171100_v2.0.a1 Prupe.8G171400_v2.0.a1 Prupe.8G171900_v2.0.a1 Prupe.8G172000_v2.0.a1
pyrus_communis	pycom05g12360 pycom05g12370 pycom05g12400
rosa_chinensis	RchiOBHm_Chr6g0279261 RchiOBHm_Chr6g0279331 RchiOBHm_Chr6g0279441
rosa_laevigata	RLG00000013151 RLG00000013152
rosa_multiflora	Rmu_sc0009584.1_g000002 Rmu_sc0026652.1_g000001
rosa_roxburghii	Rroxscaffold_7G00188960 Rroxscaffold_7G00188980 Rroxscaffold_7G00189010
rosa_rugosa	Rorug06G0124200 Rorug06G0124200
rosa_samantha	Rh6AG232600 Rh6AG232800 Rh6AG233200 Rh6BG237200 Rh6BG237500 Rh6CG239300 Rh6CG239700
rosa_wichuraiana	Rw6G020330 Rw6G020360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	841
Acc36I	ACCTGC	1 cut(s)	841
AccB1I	GGYRCC	1 cut(s)	379
AccB7I	CCANNNNNTGG	1 cut(s)	389
AccII	CGCG	1 cut(s)	470
AccIII	TCCGGA	2 cut(s)	323, 835
AciI	CCGC	3 cut(s)	214, 468, 470
AclWI	GGATC	1 cut(s)	191
AcoI	YGGCCR	1 cut(s)	471
AfaI	GTAC	1 cut(s)	441
AfiI	CCNNNNNNNGG	1 cut(s)	389
AflII	CTTAAG	1 cut(s)	812
AflIII	ACRYGT	1 cut(s)	726
AgsI	TTSAA	6 cut(s)	143, 250, 319, 548, 568, 878
Alw26I	GTCTC	2 cut(s)	572, 783
AlwI	GGATC	1 cut(s)	191
Ama87I	CYCGRG	1 cut(s)	575
Aor13HI	TCCGGA	2 cut(s)	323, 835
AoxI	GGCC	4 cut(s)	274, 391, 471, 945
ApeKI	GCWGC	3 cut(s)	153, 341, 755
Asp700I	GAANNNNTTC	1 cut(s)	831
AspLEI	GCGC	1 cut(s)	621
AspS9I	GGNCC	4 cut(s)	226, 275, 946, 972
AsuC2I	CCSGG	1 cut(s)	368
AsuHPI	GGTGA	5 cut(s)	614, 734, 865, 949, 1013
AvaI	CYCGRG	1 cut(s)	575
AvaII	GGWCC	2 cut(s)	226, 972
BaeGI	GKGCMC	2 cut(s)	403, 641
BanI	GGYRCC	1 cut(s)	379
BanII	GRGCYC	1 cut(s)	576
BbsI	GAAGAC	1 cut(s)	888
BbvI	GCAGC	3 cut(s)	165, 328, 742
BccI	CCATC	1 cut(s)	937
BciVI	GTATCC	1 cut(s)	818
BcnI	CCSGG	1 cut(s)	368
BcoDI	GTCTC	2 cut(s)	572, 783
BfaI	CTAG	4 cut(s)	170, 230, 356, 929
BfrI	CTTAAG	1 cut(s)	812
BfuAI	ACCTGC	1 cut(s)	841
BfuI	GTATCC	1 cut(s)	818
BisI	GCNGC	5 cut(s)	154, 342, 468, 471, 756
BlsI	GCNGC	5 cut(s)	155, 343, 469, 472, 757
Bme1390I	CCNGG	1 cut(s)	368
Bme18I	GGWCC	2 cut(s)	226, 972
BmeT110I	CYCGRG	1 cut(s)	575
BmgT120I	GGNCC	4 cut(s)	226, 275, 946, 972
BmiI	GGNNCC	2 cut(s)	227, 381
BmrFI	CCNGG	1 cut(s)	368
BmrI	ACTGGG	1 cut(s)	793
BmsI	GCATC	8 cut(s)	124, 182, 225, 508, 663, 742, 810, 915
BmuI	ACTGGG	1 cut(s)	793
BpiI	GAAGAC	1 cut(s)	888
BpuEI	CTTGAG	1 cut(s)	675
BpuMI	CCSGG	1 cut(s)	368
BsaJI	CCNNGG	5 cut(s)	148, 383, 409, 468, 641
BsaWI	WCCGGW	2 cut(s)	323, 835
BsaXI	ACNNNNNCTCC	4 cut(s)	438, 468, 1015, 1045
Bsc4I	CCNNNNNNNGG	1 cut(s)	389
Bse1I	ACTGG	2 cut(s)	63, 788
Bse3DI	GCAATG	1 cut(s)	513
BseAI	TCCGGA	2 cut(s)	323, 835
BseDI	CCNNGG	5 cut(s)	148, 383, 409, 468, 641
BseGI	GGATG	2 cut(s)	457, 801
BseLI	CCNNNNNNNGG	1 cut(s)	389
BseMI	GCAATG	1 cut(s)	513
BseMII	CTCAG	2 cut(s)	179, 409
BseNI	ACTGG	2 cut(s)	63, 788
BseRI	GAGGAG	1 cut(s)	42
BseSI	GKGCMC	2 cut(s)	403, 641
BseXI	GCAGC	3 cut(s)	165, 328, 742
BsgI	GTGCAG	1 cut(s)	841
Bsh1236I	CGCG	1 cut(s)	470
BshFI	GGCC	4 cut(s)	276, 393, 473, 947
BshNI	GGYRCC	1 cut(s)	379
BsiHKCI	CYCGRG	1 cut(s)	575
BsiSI	CCGG	3 cut(s)	324, 368, 836
BslFI	GGGAC	1 cut(s)	622
BslI	CCNNNNNNNGG	1 cut(s)	389
BsmAI	GTCTC	2 cut(s)	572, 783
BsmBI	CGTCTC	1 cut(s)	783
BsmFI	GGGAC	1 cut(s)	622
BsmI	GAATGC	1 cut(s)	428
BsnI	GGCC	4 cut(s)	276, 393, 473, 947
BsoBI	CYCGRG	1 cut(s)	575
Bsp1286I	GDGCHC	3 cut(s)	403, 576, 641
Bsp13I	TCCGGA	2 cut(s)	323, 835
Bsp143I	GATC	3 cut(s)	196, 664, 700
Bsp19I	CCATGG	2 cut(s)	148, 383
BspACI	CCGC	3 cut(s)	214, 468, 470
BspANI	GGCC	4 cut(s)	276, 393, 473, 947
BspCNI	CTCAG	2 cut(s)	180, 408
BspEI	TCCGGA	2 cut(s)	323, 835
BspFNI	CGCG	1 cut(s)	470
BspHI	TCATGA	2 cut(s)	219, 778
BspLI	GGNNCC	2 cut(s)	227, 381
BspMI	ACCTGC	1 cut(s)	841
BspPI	GGATC	1 cut(s)	191
BspT107I	GGYRCC	1 cut(s)	379
BspTI	CTTAAG	1 cut(s)	812
BsrDI	GCAATG	1 cut(s)	513
BsrI	ACTGG	2 cut(s)	63, 788
BssECI	CCNNGG	5 cut(s)	148, 383, 409, 468, 641
BssMI	GATC	3 cut(s)	196, 664, 700
BssT1I	CCWWGG	4 cut(s)	148, 383, 409, 641
Bst6I	CTCTTC	1 cut(s)	27
BstAFI	CTTAAG	1 cut(s)	812
BstC8I	GCNNGC	5 cut(s)	378, 491, 537, 637, 1009
BstDEI	CTNAG	2 cut(s)	188, 395
BstDSI	CCRYGG	3 cut(s)	148, 383, 468
BstF5I	GGATG	2 cut(s)	457, 801
BstFNI	CGCG	1 cut(s)	470
BstHHI	GCGC	1 cut(s)	621
BstKTI	GATC	3 cut(s)	199, 667, 703
BstMAI	GTCTC	2 cut(s)	572, 783
BstMBI	GATC	3 cut(s)	196, 664, 700
BstMWI	GCNNNNNNNGC	7 cut(s)	153, 434, 518, 527, 536, 541, 755
BstNSI	RCATGY	2 cut(s)	53, 730
BstSCI	CCNGG	1 cut(s)	366
BstSLI	GKGCMC	2 cut(s)	403, 641
BstUI	CGCG	1 cut(s)	470
BstV1I	GCAGC	3 cut(s)	165, 328, 742
BstV2I	GAAGAC	1 cut(s)	888
BsuI	GTATCC	1 cut(s)	818
BsuRI	GGCC	4 cut(s)	276, 393, 473, 947
BtgI	CCRYGG	3 cut(s)	148, 383, 468
BtsCI	GGATG	2 cut(s)	457, 801
BtsI	GCAGTG	1 cut(s)	105
BtsIMutI	CAGTG	2 cut(s)	105, 403
BveI	ACCTGC	1 cut(s)	841
Cac8I	GCNNGC	5 cut(s)	378, 491, 537, 637, 1009
CciI	TCATGA	2 cut(s)	219, 778
CfoI	GCGC	1 cut(s)	621
Cfr13I	GGNCC	4 cut(s)	226, 275, 946, 972
Cfr42I	CCGCGG	1 cut(s)	471
Csp6I	GTAC	1 cut(s)	440
CviQI	GTAC	1 cut(s)	440
DdeI	CTNAG	2 cut(s)	188, 395
DpnI	GATC	3 cut(s)	198, 666, 702
DpnII	GATC	3 cut(s)	196, 664, 700
EaeI	YGGCCR	1 cut(s)	471
Eam1104I	CTCTTC	1 cut(s)	27
EarI	CTCTTC	1 cut(s)	27
Eco130I	CCWWGG	4 cut(s)	148, 383, 409, 641
Eco24I	GRGCYC	1 cut(s)	576
Eco47I	GGWCC	2 cut(s)	226, 972
Eco88I	CYCGRG	1 cut(s)	575
EcoO109I	RGGNCCY	1 cut(s)	226
EcoT14I	CCWWGG	4 cut(s)	148, 383, 409, 641
EcoT38I	GRGCYC	1 cut(s)	576
ErhI	CCWWGG	4 cut(s)	148, 383, 409, 641
Esp3I	CGTCTC	1 cut(s)	783
FaqI	GGGAC	1 cut(s)	622
Fnu4HI	GCNGC	5 cut(s)	154, 342, 468, 471, 756
FokI	GGATG	2 cut(s)	464, 788
FriOI	GRGCYC	1 cut(s)	576
Fsp4HI	GCNGC	5 cut(s)	154, 342, 468, 471, 756
FspBI	CTAG	4 cut(s)	170, 230, 356, 929
GlaI	GCGC	1 cut(s)	620
GluI	GCNGC	5 cut(s)	154, 342, 468, 471, 756
HaeIII	GGCC	4 cut(s)	276, 393, 473, 947
HapII	CCGG	3 cut(s)	324, 368, 836
HhaI	GCGC	1 cut(s)	621
Hin6I	GCGC	1 cut(s)	619
HinP1I	GCGC	1 cut(s)	619
HincII	GTYRAC	1 cut(s)	418
HindII	GTYRAC	1 cut(s)	418
HindIII	AAGCTT	1 cut(s)	1062
HinfI	GANTC	2 cut(s)	405, 646
HpaI	GTTAAC	1 cut(s)	418
HpaII	CCGG	3 cut(s)	324, 368, 836
HphI	GGTGA	5 cut(s)	614, 734, 865, 949, 1013
Hpy166II	GTNNAC	2 cut(s)	235, 418
Hpy188I	TCNGA	1 cut(s)	189
Hpy188III	TCNNGA	7 cut(s)	67, 220, 324, 577, 692, 779, 836
Hpy8I	GTNNAC	2 cut(s)	235, 418
HpyAV	CCTTC	1 cut(s)	210
HpyCH4V	TGCA	6 cut(s)	137, 290, 521, 758, 801, 822
HpyF10VI	GCNNNNNNNGC	7 cut(s)	153, 434, 518, 527, 536, 541, 755
HpyF3I	CTNAG	2 cut(s)	188, 395
HspAI	GCGC	1 cut(s)	619
Kpn2I	TCCGGA	2 cut(s)	323, 835
KspAI	GTTAAC	1 cut(s)	418
KspI	CCGCGG	1 cut(s)	471
Kzo9I	GATC	3 cut(s)	196, 664, 700
LmnI	GCTCC	1 cut(s)	459
Lsp1109I	GCAGC	3 cut(s)	165, 328, 742
LweI	GCATC	8 cut(s)	124, 182, 225, 508, 663, 742, 810, 915
MaeI	CTAG	4 cut(s)	170, 230, 356, 929
MaeIII	GTNAC	2 cut(s)	602, 722
MalI	GATC	3 cut(s)	198, 666, 702
MboI	GATC	3 cut(s)	196, 664, 700
MboII	GAAGA	8 cut(s)	17, 44, 53, 56, 659, 767, 890, 893
MfeI	CAATTG	2 cut(s)	138, 582
MhlI	GDGCHC	3 cut(s)	403, 576, 641
MluCI	AATT	7 cut(s)	138, 269, 348, 582, 658, 759, 873
MroI	TCCGGA	2 cut(s)	323, 835
MroXI	GAANNNNTTC	1 cut(s)	831
MseI	TTAA	4 cut(s)	347, 417, 813, 1072
MspA1I	CMGCKG	1 cut(s)	470
MspCI	CTTAAG	1 cut(s)	812
MspI	CCGG	3 cut(s)	324, 368, 836
MspR9I	CCNGG	1 cut(s)	368
MunI	CAATTG	2 cut(s)	138, 582
Mva1269I	GAATGC	1 cut(s)	428
MvnI	CGCG	1 cut(s)	470
MwoI	GCNNNNNNNGC	7 cut(s)	153, 434, 518, 527, 536, 541, 755
NciI	CCSGG	1 cut(s)	368
NcoI	CCATGG	2 cut(s)	148, 383
NdeII	GATC	3 cut(s)	196, 664, 700
NlaIV	GGNNCC	2 cut(s)	227, 381
NmeAIII	GCCGAG	1 cut(s)	404
NmuCI	GTSAC	2 cut(s)	602, 722
NspI	RCATGY	2 cut(s)	53, 730
PaeR7I	CTCGAG	1 cut(s)	575
PagI	TCATGA	2 cut(s)	219, 778
PaqCI	CACCTGC	1 cut(s)	841
PciI	ACATGT	1 cut(s)	726
PcsI	WCGNNNNNNNCGW	1 cut(s)	87
PctI	GAATGC	1 cut(s)	428
PdmI	GAANNNNTTC	1 cut(s)	831
PfeI	GAWTC	2 cut(s)	405, 646
PflMI	CCANNNNNTGG	1 cut(s)	389
PkrI	GCNGC	5 cut(s)	155, 343, 469, 472, 757
PpuMI	RGGWCCY	1 cut(s)	226
PscI	ACATGT	1 cut(s)	726
Psp5II	RGGWCCY	1 cut(s)	226
PspN4I	GGNNCC	2 cut(s)	227, 381
PspPI	GGNCC	4 cut(s)	226, 275, 946, 972
PspPPI	RGGWCCY	1 cut(s)	226
RsaI	GTAC	1 cut(s)	441
RsaNI	GTAC	1 cut(s)	440
SacII	CCGCGG	1 cut(s)	471
SaqAI	TTAA	4 cut(s)	347, 417, 813, 1072
SatI	GCNGC	5 cut(s)	154, 342, 468, 471, 756
Sau3AI	GATC	3 cut(s)	196, 664, 700
Sau96I	GGNCC	4 cut(s)	226, 275, 946, 972
ScrFI	CCNGG	1 cut(s)	368
SduI	GDGCHC	3 cut(s)	403, 576, 641
SfaNI	GCATC	8 cut(s)	124, 182, 225, 508, 663, 742, 810, 915
Sfr274I	CTCGAG	1 cut(s)	575
Sfr303I	CCGCGG	1 cut(s)	471
SgrBI	CCGCGG	1 cut(s)	471
SinI	GGWCC	2 cut(s)	226, 972
SlaI	CTCGAG	1 cut(s)	575
SmlI	CTYRAG	3 cut(s)	575, 690, 812
SmoI	CTYRAG	3 cut(s)	575, 690, 812
Sse9I	AATT	7 cut(s)	138, 269, 348, 582, 658, 759, 873
SsiI	CCGC	3 cut(s)	214, 468, 470
SspI	AATATT	1 cut(s)	246
SspMI	CTAG	4 cut(s)	170, 230, 356, 929
StyD4I	CCNGG	1 cut(s)	366
StyI	CCWWGG	4 cut(s)	148, 383, 409, 641
TaqI	TCGA	5 cut(s)	90, 432, 576, 630, 649
TasI	AATT	7 cut(s)	138, 269, 348, 582, 658, 759, 873
TatI	WGTACW	1 cut(s)	439
TauI	GCSGC	2 cut(s)	470, 473
TfiI	GAWTC	2 cut(s)	405, 646
Tru1I	TTAA	4 cut(s)	347, 417, 813, 1072
Tru9I	TTAA	4 cut(s)	347, 417, 813, 1072
TscAI	CASTG	2 cut(s)	105, 403
TseFI	GTSAC	2 cut(s)	602, 722
TseI	GCWGC	3 cut(s)	153, 341, 755
Tsp45I	GTSAC	2 cut(s)	602, 722
TspDTI	ATGAA	5 cut(s)	516, 767, 903, 992, 1028
TspGWI	ACGGA	1 cut(s)	794
TspRI	CASTG	2 cut(s)	105, 403
Van91I	CCANNNNNTGG	1 cut(s)	389
Vha464I	CTTAAG	1 cut(s)	812
VpaK11BI	GGWCC	2 cut(s)	226, 972
XceI	RCATGY	2 cut(s)	53, 730
XhoI	CTCGAG	1 cut(s)	575
XmnI	GAANNNNTTC	1 cut(s)	831
XspI	CTAG	4 cut(s)	170, 230, 356, 929

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.