Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0002826

Physical Location & Seq

Genomic Coordinates Reverse (-)

17560515 .. 17562404

Gene Structure 1890 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G171900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGACACTCCTAGAGCTATCATCTGCTCTAAGATGTGATCCTTCTCCCCCTTACCGCATCATGAGGGTCCTAGTCCACCTCAAAATATTCAAAAATAAGCCAGCAACCCAATTAGGCCCCAAAGTTTATGCACAAACACCTTTGTCCAAACGGCTATTGAAATCCGGACAAAACAGCATGGCTGCTTTCATTTTGCTAGAGAATAGCCCAGTAATGCTGGCACCGTGGCATGTCCTCAGTACCCGAATCAAAGGTAATATTAGAAATTCAGTGTTTGAGGAAGTACATGGTGAGGACATATGGAGCTTTGGCGCAGCCAATCCTGATCACAACAAGCTTTTCAATGAAGCAATGGCTTGTGATGCAAGGGTGGTTGTGTCTGCAATGACTGAAAGTTGTATAGAGGTGTTCGAAGGGATTGAGACAATTGTAGATGTGGGCGGGGGTGATGGGACTACTTTGCGCTTGTTGGTTGAGGCATGTCCTTGGATTCAAGGCATCAACTTTGATCTTCCTCATGTTGTGCCTGTTGCTCAGGAGTGTGACCGCATTGAGAATGTTGGAGGTGACATGTTTGATTGTGTTCCAAAGGCTGATGCTGTAATTATTAAGTCGGTTCTTCAAGACTGGGGCGATGACGAGTGCATCCGTATCCTTAAGAAGTGCAGGGAAGCTATTGCGGAAGATAAAGGGAAGGTGATAATCGTAGAAGCGGTTATCGATGAAAAAGATGAGAAAGAGGACATCAAACTAACAAATGTGAGATTGATGCTAGACATGGTGATGATGGCCTATACAAACACAGGAAAAGAAAGGACCTTGAAGGAATGGGAATATGTTCTTGAGGAAGCTGGCTTCAGCCGACACACTATCACACCTATTCATGCTGTCTGTTCCGTTATTCAGGCTTTTCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0008757 GO:0009058 GO:0009987 GO:0010817 GO:0016740 GO:0016741 GO:0017096 GO:0017144 GO:0018130 GO:0019438 GO:0030186 GO:0030187 GO:0032259 GO:0034641 GO:0034754 GO:0042430 GO:0042435 GO:0042445 GO:0042446 GO:0043603 GO:0043604 GO:0044237 GO:0044249 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0065007 GO:0065008 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dimerisation Methyltransf_2

Protein Analysis

306

Amino Acids

34.02

Weight (kDa)

5.2

Isoelectric Point (pI)

39.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002826)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35150 AT4G35160
fragaria_vesca	FvH4_2g15840 FvH4_2g15880 FvH4_2g15880
malus_domestica	MD05G1127400.v1.1 MD05G1127600.v1.1 MD05G1127900.v1.1 MD05G1128000.v1.1 MD05G1128100.v1.1
prunus_persica	Prupe.8G171000_v2.0.a1 Prupe.8G171100_v2.0.a1 Prupe.8G171400_v2.0.a1 Prupe.8G171900_v2.0.a1 Prupe.8G172000_v2.0.a1
pyrus_communis	pycom05g12360 pycom05g12370 pycom05g12400
rosa_chinensis	RchiOBHm_Chr6g0279261 RchiOBHm_Chr6g0279331 RchiOBHm_Chr6g0279441
rosa_laevigata	RLG00000013151 RLG00000013152
rosa_multiflora	Rmu_sc0009584.1_g000002 Rmu_sc0026652.1_g000001
rosa_roxburghii	Rroxscaffold_7G00188960 Rroxscaffold_7G00188980 Rroxscaffold_7G00189010
rosa_rugosa	Rorug06G0124200 Rorug06G0124200
rosa_samantha	Rh6AG232600 Rh6AG232800 Rh6AG233200 Rh6BG237200 Rh6BG237500 Rh6CG239300 Rh6CG239700
rosa_wichuraiana	Rw6G020330 Rw6G020360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	220
AccIII	TCCGGA	1 cut(s)	164
AciI	CCGC	5 cut(s)	55, 441, 547, 680, 713
AclWI	GGATC	1 cut(s)	32
AcsI	RAATTY	1 cut(s)	265
AcuI	CTGAAG	1 cut(s)	841
AfaI	GTAC	2 cut(s)	241, 285
AflII	CTTAAG	1 cut(s)	656
AflIII	ACRYGT	1 cut(s)	570
AgsI	TTSAA	6 cut(s)	91, 160, 343, 494, 623, 823
AluBI	AGCT	5 cut(s)	16, 306, 337, 674, 851
AluI	AGCT	5 cut(s)	16, 306, 337, 674, 851
Alw26I	GTCTC	1 cut(s)	416
AlwI	GGATC	1 cut(s)	32
Aor13HI	TCCGGA	1 cut(s)	164
AoxI	GGCC	2 cut(s)	115, 789
ApeKI	GCWGC	2 cut(s)	182, 314
ApoI	RAATTY	1 cut(s)	265
Asp700I	GAANNNNTTC	1 cut(s)	837
AspLEI	GCGC	2 cut(s)	314, 465
AspS9I	GGNCC	3 cut(s)	67, 116, 816
AsuHPI	GGTGA	5 cut(s)	302, 458, 578, 709, 793
AsuII	TTCGAA	1 cut(s)	411
AvaII	GGWCC	2 cut(s)	67, 816
BanI	GGYRCC	1 cut(s)	220
BbvI	GCAGC	2 cut(s)	169, 326
BccI	CCATC	2 cut(s)	443, 781
BceAI	ACGGC	1 cut(s)	167
BciVI	GTATCC	1 cut(s)	662
BclI	TGATCA	1 cut(s)	325
BcoDI	GTCTC	1 cut(s)	416
BfaI	CTAG	4 cut(s)	11, 71, 197, 773
BfrI	CTTAAG	1 cut(s)	656
BfuI	GTATCC	1 cut(s)	662
BisI	GCNGC	2 cut(s)	183, 315
BlsI	GCNGC	2 cut(s)	184, 316
Bme18I	GGWCC	2 cut(s)	67, 816
BmgT120I	GGNCC	3 cut(s)	67, 116, 816
BmiI	GGNNCC	3 cut(s)	68, 118, 222
BmrI	ACTGGG	2 cut(s)	203, 637
BmsI	GCATC	6 cut(s)	66, 352, 507, 586, 654, 759
BmuI	ACTGGG	2 cut(s)	203, 637
Bpu10I	CCTNAGC	1 cut(s)	534
Bpu14I	TTCGAA	1 cut(s)	411
BpuEI	CTTGAG	1 cut(s)	863
Bsa29I	ATCGAT	1 cut(s)	720
BsaJI	CCNNGG	2 cut(s)	224, 485
BsaWI	WCCGGW	1 cut(s)	164
Bse1I	ACTGG	2 cut(s)	209, 632
Bse3DI	GCAATG	2 cut(s)	357, 390
BseAI	TCCGGA	1 cut(s)	164
BseCI	ATCGAT	1 cut(s)	720
BseDI	CCNNGG	2 cut(s)	224, 485
BseGI	GGATG	1 cut(s)	645
BseMI	GCAATG	2 cut(s)	357, 390
BseMII	CTCAG	2 cut(s)	250, 548
BseNI	ACTGG	2 cut(s)	209, 632
BseXI	GCAGC	2 cut(s)	169, 326
BsgI	GTGCAG	1 cut(s)	685
BshFI	GGCC	2 cut(s)	117, 791
BshNI	GGYRCC	1 cut(s)	220
BshVI	ATCGAT	1 cut(s)	720
BsiSI	CCGG	1 cut(s)	165
BslFI	GGGAC	1 cut(s)	466
BsmAI	GTCTC	1 cut(s)	416
BsmFI	GGGAC	1 cut(s)	466
BsnI	GGCC	2 cut(s)	117, 791
Bsp119I	TTCGAA	1 cut(s)	411
Bsp13I	TCCGGA	1 cut(s)	164
Bsp143I	GATC	3 cut(s)	37, 325, 508
BspACI	CCGC	5 cut(s)	55, 441, 547, 680, 713
BspANI	GGCC	2 cut(s)	117, 791
BspCNI	CTCAG	2 cut(s)	249, 547
BspDI	ATCGAT	1 cut(s)	720
BspEI	TCCGGA	1 cut(s)	164
BspHI	TCATGA	1 cut(s)	60
BspLI	GGNNCC	3 cut(s)	68, 118, 222
BspPI	GGATC	1 cut(s)	32
BspT104I	TTCGAA	1 cut(s)	411
BspT107I	GGYRCC	1 cut(s)	220
BspTI	CTTAAG	1 cut(s)	656
BsrDI	GCAATG	2 cut(s)	357, 390
BsrI	ACTGG	2 cut(s)	209, 632
BssECI	CCNNGG	2 cut(s)	224, 485
BssMI	GATC	3 cut(s)	37, 325, 508
BssT1I	CCWWGG	1 cut(s)	485
Bst4CI	ACNGT	1 cut(s)	225
BstAFI	CTTAAG	1 cut(s)	656
BstBI	TTCGAA	1 cut(s)	411
BstC8I	GCNNGC	3 cut(s)	102, 219, 853
BstDEI	CTNAG	3 cut(s)	29, 236, 534
BstDSI	CCRYGG	1 cut(s)	224
BstF5I	GGATG	1 cut(s)	645
BstHHI	GCGC	2 cut(s)	314, 465
BstKTI	GATC	3 cut(s)	40, 328, 511
BstMAI	GTCTC	1 cut(s)	416
BstMBI	GATC	3 cut(s)	37, 325, 508
BstMWI	GCNNNNNNNGC	1 cut(s)	362
BstNSI	RCATGY	3 cut(s)	233, 483, 574
BstV1I	GCAGC	2 cut(s)	169, 326
Bsu15I	ATCGAT	1 cut(s)	720
BsuI	GTATCC	1 cut(s)	662
BsuRI	GGCC	2 cut(s)	117, 791
BsuTUI	ATCGAT	1 cut(s)	720
BtgI	CCRYGG	1 cut(s)	224
BtgZI	GCGATG	1 cut(s)	648
BtsCI	GGATG	1 cut(s)	645
BtsIMutI	CAGTG	1 cut(s)	276
Cac8I	GCNNGC	3 cut(s)	102, 219, 853
CciI	TCATGA	1 cut(s)	60
CfoI	GCGC	2 cut(s)	314, 465
Cfr13I	GGNCC	3 cut(s)	67, 116, 816
ClaI	ATCGAT	1 cut(s)	720
Csp6I	GTAC	2 cut(s)	240, 284
CviAII	CATG	9 cut(s)	61, 178, 230, 287, 480, 518, 571, 778, 884
CviQI	GTAC	2 cut(s)	240, 284
DdeI	CTNAG	3 cut(s)	29, 236, 534
DpnI	GATC	3 cut(s)	39, 327, 510
DpnII	GATC	3 cut(s)	37, 325, 508
Eco130I	CCWWGG	1 cut(s)	485
Eco47I	GGWCC	2 cut(s)	67, 816
Eco57I	CTGAAG	1 cut(s)	841
EcoO109I	RGGNCCY	3 cut(s)	67, 116, 816
EcoT14I	CCWWGG	1 cut(s)	485
ErhI	CCWWGG	1 cut(s)	485
FaeI	CATG	9 cut(s)	64, 181, 233, 290, 483, 521, 574, 781, 887
FaqI	GGGAC	1 cut(s)	466
FatI	CATG	9 cut(s)	60, 177, 229, 286, 479, 517, 570, 777, 883
FauI	CCCGC	1 cut(s)	434
FauNDI	CATATG	1 cut(s)	299
FbaI	TGATCA	1 cut(s)	325
Fnu4HI	GCNGC	2 cut(s)	183, 315
FokI	GGATG	1 cut(s)	632
Fsp4HI	GCNGC	2 cut(s)	183, 315
FspBI	CTAG	4 cut(s)	11, 71, 197, 773
GlaI	GCGC	2 cut(s)	313, 464
GluI	GCNGC	2 cut(s)	183, 315
HaeIII	GGCC	2 cut(s)	117, 791
HapII	CCGG	1 cut(s)	165
HhaI	GCGC	2 cut(s)	314, 465
Hin1II	CATG	9 cut(s)	64, 181, 233, 290, 483, 521, 574, 781, 887
Hin6I	GCGC	2 cut(s)	312, 463
HinP1I	GCGC	2 cut(s)	312, 463
HindIII	AAGCTT	1 cut(s)	335
HinfI	GANTC	2 cut(s)	246, 490
HpaII	CCGG	1 cut(s)	165
HphI	GGTGA	5 cut(s)	302, 458, 578, 709, 793
Hpy166II	GTNNAC	1 cut(s)	76
Hpy188III	TCNNGA	6 cut(s)	61, 165, 323, 536, 623, 842
Hpy8I	GTNNAC	1 cut(s)	76
HpyAV	CCTTC	4 cut(s)	51, 407, 688, 817
HpyCH4III	ACNGT	1 cut(s)	225
HpyCH4V	TGCA	5 cut(s)	131, 365, 383, 645, 666
HpyF10VI	GCNNNNNNNGC	1 cut(s)	362
HpyF3I	CTNAG	3 cut(s)	29, 236, 534
Hsp92II	CATG	9 cut(s)	64, 181, 233, 290, 483, 521, 574, 781, 887
HspAI	GCGC	2 cut(s)	312, 463
Kpn2I	TCCGGA	1 cut(s)	164
Ksp22I	TGATCA	1 cut(s)	325
Kzo9I	GATC	3 cut(s)	37, 325, 508
LmnI	GCTCC	1 cut(s)	303
Lsp1109I	GCAGC	2 cut(s)	169, 326
LweI	GCATC	6 cut(s)	66, 352, 507, 586, 654, 759
MaeI	CTAG	4 cut(s)	11, 71, 197, 773
MaeIII	GTNAC	2 cut(s)	542, 566
MalI	GATC	3 cut(s)	39, 327, 510
MboI	GATC	3 cut(s)	37, 325, 508
MboII	GAAGA	3 cut(s)	503, 611, 695
MfeI	CAATTG	1 cut(s)	426
MluCI	AATT	4 cut(s)	110, 265, 426, 603
MmeI	TCCRAC	1 cut(s)	541
MroI	TCCGGA	1 cut(s)	164
MroXI	GAANNNNTTC	1 cut(s)	837
MseI	TTAA	3 cut(s)	609, 657, 916
MslI	CAYNNNNRTG	1 cut(s)	782
MspCI	CTTAAG	1 cut(s)	656
MspI	CCGG	1 cut(s)	165
MunI	CAATTG	1 cut(s)	426
MwoI	GCNNNNNNNGC	1 cut(s)	362
NdeI	CATATG	1 cut(s)	299
NdeII	GATC	3 cut(s)	37, 325, 508
NlaIII	CATG	9 cut(s)	64, 181, 233, 290, 483, 521, 574, 781, 887
NlaIV	GGNNCC	3 cut(s)	68, 118, 222
NmuCI	GTSAC	2 cut(s)	542, 566
NspI	RCATGY	3 cut(s)	233, 483, 574
NspV	TTCGAA	1 cut(s)	411
PagI	TCATGA	1 cut(s)	60
PciI	ACATGT	1 cut(s)	570
PdmI	GAANNNNTTC	1 cut(s)	837
PfeI	GAWTC	2 cut(s)	246, 490
PkrI	GCNGC	2 cut(s)	184, 316
PpuMI	RGGWCCY	2 cut(s)	67, 816
PscI	ACATGT	1 cut(s)	570
Psp5II	RGGWCCY	2 cut(s)	67, 816
PspN4I	GGNNCC	3 cut(s)	68, 118, 222
PspPI	GGNCC	3 cut(s)	67, 116, 816
PspPPI	RGGWCCY	2 cut(s)	67, 816
RsaI	GTAC	2 cut(s)	241, 285
RsaNI	GTAC	2 cut(s)	240, 284
RseI	CAYNNNNRTG	1 cut(s)	782
SaqAI	TTAA	3 cut(s)	609, 657, 916
SatI	GCNGC	2 cut(s)	183, 315
Sau3AI	GATC	3 cut(s)	37, 325, 508
Sau96I	GGNCC	3 cut(s)	67, 116, 816
SfaNI	GCATC	6 cut(s)	66, 352, 507, 586, 654, 759
SfuI	TTCGAA	1 cut(s)	411
SinI	GGWCC	2 cut(s)	67, 816
SmiMI	CAYNNNNRTG	1 cut(s)	782
SmlI	CTYRAG	2 cut(s)	656, 842
SmoI	CTYRAG	2 cut(s)	656, 842
Sse9I	AATT	4 cut(s)	110, 265, 426, 603
SsiI	CCGC	5 cut(s)	55, 441, 547, 680, 713
SspI	AATATT	2 cut(s)	87, 259
SspMI	CTAG	4 cut(s)	11, 71, 197, 773
StyI	CCWWGG	1 cut(s)	485
TaaI	ACNGT	1 cut(s)	225
TaqI	TCGA	2 cut(s)	411, 720
TasI	AATT	4 cut(s)	110, 265, 426, 603
TatI	WGTACW	1 cut(s)	283
TfiI	GAWTC	2 cut(s)	246, 490
Tru1I	TTAA	3 cut(s)	609, 657, 916
Tru9I	TTAA	3 cut(s)	609, 657, 916
TscAI	CASTG	1 cut(s)	276
TseFI	GTSAC	2 cut(s)	542, 566
TseI	GCWGC	2 cut(s)	182, 314
Tsp45I	GTSAC	2 cut(s)	542, 566
TspDTI	ATGAA	4 cut(s)	178, 360, 738, 872
TspGWI	ACGGA	2 cut(s)	638, 886
TspRI	CASTG	1 cut(s)	276
Vha464I	CTTAAG	1 cut(s)	656
VpaK11BI	GGWCC	2 cut(s)	67, 816
XapI	RAATTY	1 cut(s)	265
XceI	RCATGY	3 cut(s)	233, 483, 574
XmnI	GAANNNNTTC	1 cut(s)	837
XspI	CTAG	4 cut(s)	11, 71, 197, 773

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.