Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002826

Physical Location & Seq

Genomic Coordinates Reverse (-)

42433509 .. 42435133

Gene Structure 1625 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ25048

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1152 bp

ATGGATTACCCAAAATGTTCACTCCAGTTGTATATATCACATGCTAGGAGCTTGGGACTTGCCAAGAAAAAGATGGAACATACACAAAGAAAGCCAACTTTGGAAGAGAAAGGAGAGGAACGTGCCAAAGTGGAAGTGTGGAATTATGTGCTTGGGTTTTCAAAAATTGCAGTGGTAAAATGTGCCATTGAGCTTGGAATAGCTGATGCTATCGAAAGCCATGGAAGCCCCATGACACTCTTAGAGCTATCCAAAACTCTTAAGTGCGATCCTTCTTCCCTTTACCGCATCATGAGGTTCCTAGTTCACCAGAAAATATTCAAAGAAGTCCAACCCAAAATCCCATCAGACCCCAAAAGTTATGCACAGTCACCTTTGTCCCGCTGCCTACTAAAATTCGGTGAAAATAGCATGGCTGCAATGATTTTGCTGGAGAGTAGTCCGGTAATGCTAGCACCATGGCATTGCCTTAGTGCCCGTATTCTAGGCAATGGCACCAGTACTCCCGCATTTGAGGCAGTACATGGTGAGGATATATGGAGCTTTGCAGCGGCTAATCCCGGTCACAGCGAGCTTATCAATGAAGCAATGGCTTGTGATGCATGCTTGGCACTGCCTGCACTGATTGACAGTTCTTTAGAGGTTTTCAATGGGATTGAGACCATAGTGGATGTGGGTGGTGGTAATGGAACTACTTTAGGCTTCTTGGTTAAGGCCTGTGCTTGGATTACTCGAGGGATCAATTTTGATCTTCCTCATGTTGTATCTGTTGCTGAGGAGAGTGATCGAGTGGAGAATGTTGGAGGAGACATGTTTGATTGTATTCCAAAGGCCGATGCTGCAATTATCAAATCCGTTCTTCATGACTGGGGAGATGAGGAGTGCATCCGTATACTGAAGAAATGTAAGGAAGCAATTCCTGAGGACAAAGGGAAGGTGATAATTCTGGAAGCTGTTATTGAAGAAGATGAGATCAAAGACGAGCTAACCGATGTGAGATTGATGCTAGACATGGTGATGATGGCCCATACTAGCACTGGCAAAGAGAGGACCTTGAAGGAATGGGGATATGTTATTGGGGAAGCTGGCTTTAGCCGACACACGGTCACACCTATTAATGCTGTCCAATCTGTTATCCAGGCTTTTCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0008757 GO:0009058 GO:0009987 GO:0010817 GO:0016740 GO:0016741 GO:0017096 GO:0017144 GO:0018130 GO:0019438 GO:0030186 GO:0030187 GO:0032259 GO:0034641 GO:0034754 GO:0042430 GO:0042435 GO:0042445 GO:0042446 GO:0043603 GO:0043604 GO:0044237 GO:0044249 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0065007 GO:0065008 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dimerisation Methyltransf_2

Protein Analysis

383

Amino Acids

42.11

Weight (kDa)

5.39

Isoelectric Point (pI)

39.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dimerisation	PF08100	47 - 132	7.7e-19	O-methyltransferase dimerisation domain
Methyltransf_2	PF00891	154 - 365	2.9e-44	O-methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002826)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35150 AT4G35160
fragaria_vesca	FvH4_2g15840 FvH4_2g15880 FvH4_2g15880
malus_domestica	MD05G1127400.v1.1 MD05G1127600.v1.1 MD05G1127900.v1.1 MD05G1128000.v1.1 MD05G1128100.v1.1
prunus_persica	Prupe.8G171000_v2.0.a1 Prupe.8G171100_v2.0.a1 Prupe.8G171400_v2.0.a1 Prupe.8G171900_v2.0.a1 Prupe.8G172000_v2.0.a1
pyrus_communis	pycom05g12360 pycom05g12370 pycom05g12400
rosa_chinensis	RchiOBHm_Chr6g0279261 RchiOBHm_Chr6g0279331 RchiOBHm_Chr6g0279441
rosa_laevigata	RLG00000013151 RLG00000013152
rosa_multiflora	Rmu_sc0009584.1_g000002 Rmu_sc0026652.1_g000001
rosa_roxburghii	Rroxscaffold_7G00188960 Rroxscaffold_7G00188980 Rroxscaffold_7G00189010
rosa_rugosa	Rorug06G0124200 Rorug06G0124200
rosa_samantha	Rh6AG232600 Rh6AG232800 Rh6AG233200 Rh6BG237200 Rh6BG237500 Rh6CG239300 Rh6CG239700
rosa_wichuraiana	Rw6G020330 Rw6G020360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	494
AccI	GTMKAC	1 cut(s)	892
AciI	CCGC	4 cut(s)	286, 382, 507, 551
AclWI	GGATC	2 cut(s)	263, 746
AcsI	RAATTY	1 cut(s)	395
AcuI	CTGAAG	1 cut(s)	917
AfaI	GTAC	2 cut(s)	502, 522
AfiI	CCNNNNNNNGG	2 cut(s)	723, 1102
AflII	CTTAAG	1 cut(s)	260
AflIII	ACRYGT	1 cut(s)	810
AgsI	TTSAA	5 cut(s)	162, 322, 649, 962, 1057
AhdI	GACNNNNNGTC	1 cut(s)	1103
AjnI	CCWGG	1 cut(s)	1137
AluBI	AGCT	9 cut(s)	51, 193, 203, 247, 543, 574, 953, 985, 1085
AluI	AGCT	9 cut(s)	51, 193, 203, 247, 543, 574, 953, 985, 1085
Alw26I	GTCTC	2 cut(s)	653, 801
AlwI	GGATC	2 cut(s)	263, 746
Ama87I	CYCGRG	1 cut(s)	732
AoxI	GGCC	3 cut(s)	714, 831, 1023
ApeKI	GCWGC	4 cut(s)	384, 416, 548, 839
ApoI	RAATTY	1 cut(s)	395
AseI	ATTAAT	1 cut(s)	1116
Asp700I	GAANNNNTTC	2 cut(s)	317, 915
AspS9I	GGNCC	2 cut(s)	1024, 1050
AsuC2I	CCSGG	1 cut(s)	561
AsuHPI	GGTGA	6 cut(s)	299, 363, 413, 539, 949, 1027
AsuNHI	GCTAGC	1 cut(s)	451
AvaI	CYCGRG	1 cut(s)	732
AvaII	GGWCC	1 cut(s)	1050
AxyI	CCTNAGG	1 cut(s)	921
BaeGI	GKGCMC	1 cut(s)	478
BanI	GGYRCC	1 cut(s)	494
BbvCI	CCTCAGC	1 cut(s)	774
BbvI	GCAGC	4 cut(s)	371, 403, 560, 826
BccI	CCATC	3 cut(s)	67, 352, 1015
BciT130I	CCWGG	1 cut(s)	1139
BcnI	CCSGG	1 cut(s)	561
BcoDI	GTCTC	2 cut(s)	653, 801
BfaI	CTAG	6 cut(s)	45, 302, 452, 485, 1007, 1032
BfrI	CTTAAG	1 cut(s)	260
BisI	GCNGC	5 cut(s)	385, 417, 549, 552, 840
BlsI	GCNGC	5 cut(s)	386, 418, 550, 553, 841
BmcAI	AGTACT	1 cut(s)	502
Bme1390I	CCNGG	2 cut(s)	561, 1139
Bme18I	GGWCC	1 cut(s)	1050
BmeRI	GACNNNNNGTC	1 cut(s)	1103
BmeT110I	CYCGRG	1 cut(s)	732
BmgT120I	GGNCC	2 cut(s)	1024, 1050
BmiI	GGNNCC	2 cut(s)	299, 496
BmrFI	CCNGG	2 cut(s)	561, 1139
BmrI	ACTGGG	1 cut(s)	877
BmsI	GCATC	6 cut(s)	196, 297, 589, 826, 894, 993
BmtI	GCTAGC	1 cut(s)	455
BmuI	ACTGGG	1 cut(s)	877
BpmI	CTGGAG	2 cut(s)	8, 452
Bpu10I	CCTNAGC	1 cut(s)	774
BpuMI	CCSGG	1 cut(s)	561
BsaI	GGTCTC	1 cut(s)	653
BsaJI	CCNNGG	2 cut(s)	220, 458
BsaWI	WCCGGW	1 cut(s)	442
BsaXI	ACNNNNNCTCC	2 cut(s)	487, 517
Bsc4I	CCNNNNNNNGG	2 cut(s)	723, 1102
Bse1I	ACTGG	4 cut(s)	25, 498, 872, 1042
Bse21I	CCTNAGG	1 cut(s)	921
Bse3DI	GCAATG	4 cut(s)	426, 463, 496, 594
BseBI	CCWGG	1 cut(s)	1139
BseDI	CCNNGG	2 cut(s)	220, 458
BseGI	GGATG	2 cut(s)	676, 885
BseLI	CCNNNNNNNGG	2 cut(s)	723, 1102
BseMI	GCAATG	4 cut(s)	426, 463, 496, 594
BseMII	CTCAG	2 cut(s)	765, 912
BseNI	ACTGG	4 cut(s)	25, 498, 872, 1042
BseRI	GAGGAG	3 cut(s)	791, 819, 893
BseSI	GKGCMC	1 cut(s)	478
BseXI	GCAGC	4 cut(s)	371, 403, 560, 826
BsgI	GTGCAG	1 cut(s)	603
BshFI	GGCC	3 cut(s)	716, 833, 1025
BshNI	GGYRCC	1 cut(s)	494
BsiHKCI	CYCGRG	1 cut(s)	732
BsiSI	CCGG	2 cut(s)	443, 561
BslFI	GGGAC	2 cut(s)	69, 364
BslI	CCNNNNNNNGG	2 cut(s)	723, 1102
BsmAI	GTCTC	2 cut(s)	653, 801
BsmFI	GGGAC	2 cut(s)	69, 364
BsnI	GGCC	3 cut(s)	716, 833, 1025
Bso31I	GGTCTC	1 cut(s)	653
BsoBI	CYCGRG	1 cut(s)	732
Bsp1286I	GDGCHC	1 cut(s)	478
Bsp143I	GATC	5 cut(s)	268, 738, 748, 784, 972
Bsp19I	CCATGG	2 cut(s)	220, 458
BspACI	CCGC	4 cut(s)	286, 382, 507, 551
BspANI	GGCC	3 cut(s)	716, 833, 1025
BspCNI	CTCAG	2 cut(s)	766, 913
BspHI	TCATGA	2 cut(s)	291, 862
BspLI	GGNNCC	2 cut(s)	299, 496
BspOI	GCTAGC	1 cut(s)	455
BspPI	GGATC	2 cut(s)	263, 746
BspT107I	GGYRCC	1 cut(s)	494
BspTI	CTTAAG	1 cut(s)	260
BspTNI	GGTCTC	1 cut(s)	653
BsrDI	GCAATG	4 cut(s)	426, 463, 496, 594
BsrI	ACTGG	4 cut(s)	25, 498, 872, 1042
BssECI	CCNNGG	2 cut(s)	220, 458
BssMI	GATC	5 cut(s)	268, 738, 748, 784, 972
BssNAI	GTATAC	1 cut(s)	893
BssT1I	CCWWGG	2 cut(s)	220, 458
Bst1107I	GTATAC	1 cut(s)	893
Bst2UI	CCWGG	1 cut(s)	1139
Bst4CI	ACNGT	3 cut(s)	369, 632, 1105
Bst6I	CTCTTC	1 cut(s)	99
BstAFI	CTTAAG	1 cut(s)	260
BstAPI	GCANNNNNTGC	1 cut(s)	617
BstC8I	GCNNGC	5 cut(s)	453, 572, 604, 618, 1087
BstDEI	CTNAG	4 cut(s)	241, 470, 774, 921
BstDSI	CCRYGG	2 cut(s)	220, 458
BstF5I	GGATG	2 cut(s)	676, 885
BstKTI	GATC	5 cut(s)	271, 741, 751, 787, 975
BstMAI	GTCTC	2 cut(s)	653, 801
BstMBI	GATC	5 cut(s)	268, 738, 748, 784, 972
BstMWI	GCNNNNNNNGC	6 cut(s)	225, 515, 599, 608, 617, 839
BstNI	CCWGG	1 cut(s)	1139
BstNSI	RCATGY	3 cut(s)	44, 606, 814
BstSCI	CCNGG	2 cut(s)	559, 1137
BstSLI	GKGCMC	1 cut(s)	478
BstV1I	GCAGC	4 cut(s)	371, 403, 560, 826
BstZ17I	GTATAC	1 cut(s)	893
Bsu36I	CCTNAGG	1 cut(s)	921
BsuRI	GGCC	3 cut(s)	716, 833, 1025
BtgI	CCRYGG	2 cut(s)	220, 458
BtsCI	GGATG	2 cut(s)	676, 885
BtsI	GCAGTG	2 cut(s)	177, 611
BtsIMutI	CAGTG	4 cut(s)	177, 611, 620, 1035
Cac8I	GCNNGC	5 cut(s)	453, 572, 604, 618, 1087
CciI	TCATGA	2 cut(s)	291, 862
Cfr13I	GGNCC	2 cut(s)	1024, 1050
Csp6I	GTAC	2 cut(s)	501, 521
CviQI	GTAC	2 cut(s)	501, 521
DdeI	CTNAG	4 cut(s)	241, 470, 774, 921
DpnI	GATC	5 cut(s)	270, 740, 750, 786, 974
DpnII	GATC	5 cut(s)	268, 738, 748, 784, 972
DriI	GACNNNNNGTC	1 cut(s)	1103
Eam1104I	CTCTTC	1 cut(s)	99
Eam1105I	GACNNNNNGTC	1 cut(s)	1103
EarI	CTCTTC	1 cut(s)	99
Eco130I	CCWWGG	2 cut(s)	220, 458
Eco147I	AGGCCT	1 cut(s)	716
Eco31I	GGTCTC	1 cut(s)	653
Eco47I	GGWCC	1 cut(s)	1050
Eco57I	CTGAAG	1 cut(s)	917
Eco81I	CCTNAGG	1 cut(s)	921
Eco88I	CYCGRG	1 cut(s)	732
EcoO109I	RGGNCCY	1 cut(s)	1050
EcoRII	CCWGG	1 cut(s)	1137
EcoT14I	CCWWGG	2 cut(s)	220, 458
EcoT22I	ATGCAT	1 cut(s)	604
ErhI	CCWWGG	2 cut(s)	220, 458
FaqI	GGGAC	2 cut(s)	69, 364
FauI	CCCGC	2 cut(s)	389, 514
FblI	GTMKAC	1 cut(s)	892
Fnu4HI	GCNGC	5 cut(s)	385, 417, 549, 552, 840
FokI	GGATG	2 cut(s)	683, 872
Fsp4HI	GCNGC	5 cut(s)	385, 417, 549, 552, 840
FspBI	CTAG	6 cut(s)	45, 302, 452, 485, 1007, 1032
GluI	GCNGC	5 cut(s)	385, 417, 549, 552, 840
GsuI	CTGGAG	2 cut(s)	8, 452
HaeIII	GGCC	3 cut(s)	716, 833, 1025
HapII	CCGG	2 cut(s)	443, 561
HpaII	CCGG	2 cut(s)	443, 561
HphI	GGTGA	6 cut(s)	299, 363, 413, 539, 949, 1027
Hpy166II	GTNNAC	3 cut(s)	20, 307, 893
Hpy188I	TCNGA	1 cut(s)	349
Hpy188III	TCNNGA	4 cut(s)	292, 863, 920, 947
Hpy8I	GTNNAC	3 cut(s)	20, 307, 893
HpyAV	CCTTC	3 cut(s)	282, 928, 1051
HpyCH4III	ACNGT	3 cut(s)	369, 632, 1105
HpyCH4IV	ACGT	1 cut(s)	121
HpyCH4V	TGCA	8 cut(s)	170, 365, 419, 548, 602, 620, 842, 885
HpyF10VI	GCNNNNNNNGC	6 cut(s)	225, 515, 599, 608, 617, 839
HpyF3I	CTNAG	4 cut(s)	241, 470, 774, 921
HpySE526I	ACGT	1 cut(s)	121
Kzo9I	GATC	5 cut(s)	268, 738, 748, 784, 972
LmnI	GCTCC	2 cut(s)	48, 540
Lsp1109I	GCAGC	4 cut(s)	371, 403, 560, 826
LweI	GCATC	6 cut(s)	196, 297, 589, 826, 894, 993
MaeI	CTAG	6 cut(s)	45, 302, 452, 485, 1007, 1032
MaeII	ACGT	1 cut(s)	121
MaeIII	GTNAC	3 cut(s)	369, 563, 1105
MalI	GATC	5 cut(s)	270, 740, 750, 786, 974
MboI	GATC	5 cut(s)	268, 738, 748, 784, 972
MboII	GAAGA	7 cut(s)	116, 267, 743, 851, 910, 974, 977
MhlI	GDGCHC	1 cut(s)	478
MluCI	AATT	7 cut(s)	142, 165, 395, 742, 843, 915, 942
MmeI	TCCRAC	2 cut(s)	355, 781
Mph1103I	ATGCAT	1 cut(s)	604
MroXI	GAANNNNTTC	2 cut(s)	317, 915
MseI	TTAA	3 cut(s)	261, 711, 1116
MslI	CAYNNNNRTG	1 cut(s)	1016
MspA1I	CMGCKG	2 cut(s)	384, 551
MspCI	CTTAAG	1 cut(s)	260
MspI	CCGG	2 cut(s)	443, 561
MspR9I	CCNGG	2 cut(s)	561, 1139
MvaI	CCWGG	1 cut(s)	1139
MwoI	GCNNNNNNNGC	6 cut(s)	225, 515, 599, 608, 617, 839
NciI	CCSGG	1 cut(s)	561
NcoI	CCATGG	2 cut(s)	220, 458
NdeII	GATC	5 cut(s)	268, 738, 748, 784, 972
NheI	GCTAGC	1 cut(s)	451
NlaIV	GGNNCC	2 cut(s)	299, 496
NmuCI	GTSAC	3 cut(s)	369, 563, 1105
NsiI	ATGCAT	1 cut(s)	604
NspI	RCATGY	3 cut(s)	44, 606, 814
PaeI	GCATGC	1 cut(s)	606
PaeR7I	CTCGAG	1 cut(s)	732
PagI	TCATGA	2 cut(s)	291, 862
PceI	AGGCCT	1 cut(s)	716
PciI	ACATGT	1 cut(s)	810
PcsI	WCGNNNNNNNCGW	1 cut(s)	987
PdmI	GAANNNNTTC	2 cut(s)	317, 915
PkrI	GCNGC	5 cut(s)	386, 418, 550, 553, 841
PpuMI	RGGWCCY	1 cut(s)	1050
PscI	ACATGT	1 cut(s)	810
PshBI	ATTAAT	1 cut(s)	1116
Psp5II	RGGWCCY	1 cut(s)	1050
Psp6I	CCWGG	1 cut(s)	1137
PspGI	CCWGG	1 cut(s)	1137
PspN4I	GGNNCC	2 cut(s)	299, 496
PspPI	GGNCC	2 cut(s)	1024, 1050
PspPPI	RGGWCCY	1 cut(s)	1050
PspXI	VCTCGAGB	1 cut(s)	732
RsaI	GTAC	2 cut(s)	502, 522
RsaNI	GTAC	2 cut(s)	501, 521
RseI	CAYNNNNRTG	1 cut(s)	1016
SaqAI	TTAA	3 cut(s)	261, 711, 1116
SatI	GCNGC	5 cut(s)	385, 417, 549, 552, 840
Sau3AI	GATC	5 cut(s)	268, 738, 748, 784, 972
Sau96I	GGNCC	2 cut(s)	1024, 1050
ScaI	AGTACT	1 cut(s)	502
ScrFI	CCNGG	2 cut(s)	561, 1139
SduI	GDGCHC	1 cut(s)	478
SfaNI	GCATC	6 cut(s)	196, 297, 589, 826, 894, 993
Sfr274I	CTCGAG	1 cut(s)	732
SinI	GGWCC	1 cut(s)	1050
SlaI	CTCGAG	1 cut(s)	732
SmiMI	CAYNNNNRTG	1 cut(s)	1016
SmlI	CTYRAG	2 cut(s)	260, 732
SmoI	CTYRAG	2 cut(s)	260, 732
SphI	GCATGC	1 cut(s)	606
Sse9I	AATT	7 cut(s)	142, 165, 395, 742, 843, 915, 942
SseBI	AGGCCT	1 cut(s)	716
SsiI	CCGC	4 cut(s)	286, 382, 507, 551
SspI	AATATT	1 cut(s)	318
SspMI	CTAG	6 cut(s)	45, 302, 452, 485, 1007, 1032
StuI	AGGCCT	1 cut(s)	716
StyD4I	CCNGG	2 cut(s)	559, 1137
StyI	CCWWGG	2 cut(s)	220, 458
TaaI	ACNGT	3 cut(s)	369, 632, 1105
TaiI	ACGT	1 cut(s)	124
TaqI	TCGA	3 cut(s)	213, 733, 787
TasI	AATT	7 cut(s)	142, 165, 395, 742, 843, 915, 942
TatI	WGTACW	2 cut(s)	500, 520
TauI	GCSGC	1 cut(s)	554
Tru1I	TTAA	3 cut(s)	261, 711, 1116
Tru9I	TTAA	3 cut(s)	261, 711, 1116
TscAI	CASTG	4 cut(s)	177, 618, 627, 1042
TseFI	GTSAC	3 cut(s)	369, 563, 1105
TseI	GCWGC	4 cut(s)	384, 416, 548, 839
Tsp45I	GTSAC	3 cut(s)	369, 563, 1105
TspDTI	ATGAA	2 cut(s)	597, 851
TspGWI	ACGGA	2 cut(s)	844, 878
TspRI	CASTG	4 cut(s)	177, 618, 627, 1042
Vha464I	CTTAAG	1 cut(s)	260
VpaK11BI	GGWCC	1 cut(s)	1050
VspI	ATTAAT	1 cut(s)	1116
XapI	RAATTY	1 cut(s)	395
XceI	RCATGY	3 cut(s)	44, 606, 814
XcmI	CCANNNNNNNNNTGG	3 cut(s)	70, 670, 1034
XhoI	CTCGAG	1 cut(s)	732
XmiI	GTMKAC	1 cut(s)	892
XmnI	GAANNNNTTC	2 cut(s)	317, 915
XspI	CTAG	6 cut(s)	45, 302, 452, 485, 1007, 1032
ZrmI	AGTACT	1 cut(s)	502
Zsp2I	ATGCAT	1 cut(s)	604

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.