Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0002826

Physical Location & Seq

Genomic Coordinates Reverse (-)

15867054 .. 15868406

Gene Structure 1353 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g12400.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

ATGGAAGATAACCAAAGTGTGCTAACATGGGAAGAGGAAGAAGAACATGCCAAGGTGGATGTGTGGAAATATGTGTTCAGGTTCGTTGAAATCGCGGTGGTAAAATGTGCTATTGAGCTCGGAATAGCTGAAGCAATTGAAACCCGTGGAAGCCCGATGACCCTCTTAGAGCTCTCTTCTGCTTTAAGATGCGATCCTTCTCACCTTTACCGCATCATGAGGGTTCTAGTACATCTCAAAATATTCAAAGAACAAACCACAATCCAATTAGGCTCCAAAAGTTATGCACAATCACCTTTGTCCCGCCTATTACTGAAATCCGGAGAAAATAGCATGGCGGCACTGATCTTGCTGGAGAATAGTCCGACAATGCTGGCACCATGGCACAGCCTAAGTTCCCGAGTTCAAGGAAATCTTAGGAATCCAGTGTTTGAGGAAGTACACGGTAAGGACCTATGGAGCTTTGGCGTGGCCAACCCTGATCACAACAAGCTCTTCAATGAAGCAATGGCTTGTGATGCAAGGTTGGCTGTGCCTGCATTGGTTAAAAGTTGTGTAGAGGTGTTCAAAGGGGTTGGCACACTAGTAGATGTGGGAGGGGGTAATGGGACTACTTTGCGCTTGTTGGTTGAGGCTTGTCCTTGGATTCAAGGCATCAACTTTGATCTTCCTCATGTTGTCTCTGATGCTCAGAAGCCTGACCGCATTGAGAATGTTGGAGGCGACATGTTTGATTGTGTTCCGAAGGCTGATGCTGTAATTATCAAGTGGGTTCTTCATGACTGGGGAGACGATGATTGCATCCGCATCCTGAAGAAGTGCAGGGAAGCTATTCCTATAGACAAAGGGAAGGTGATCATCGTAGAAGCTGTTATTGACGAAAAAGATGAGAAAGCAAACTCAAAGCTAACAAATGCGAGACTGATGCTGGACATGGTGATGATCGCTCATACTGGCACAGGCAAAGAAAGGACCATGGAGGAATGGGAATATGTTCTCGGGGAGGCTGGCTTTAGTCGACACACAATCACACCTATTCATGCTATCCAATCTGTTATTCAAGCTTTTCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0008757 GO:0009058 GO:0009987 GO:0010817 GO:0016740 GO:0016741 GO:0017096 GO:0017144 GO:0018130 GO:0019438 GO:0030186 GO:0030187 GO:0032259 GO:0034641 GO:0034754 GO:0042430 GO:0042435 GO:0042445 GO:0042446 GO:0043603 GO:0043604 GO:0044237 GO:0044249 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0065007 GO:0065008 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dimerisation Methyltransf_2

Protein Analysis

358

Amino Acids

39.78

Weight (kDa)

5.44

Isoelectric Point (pI)

33.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002826)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35150 AT4G35160
fragaria_vesca	FvH4_2g15840 FvH4_2g15880 FvH4_2g15880
malus_domestica	MD05G1127400.v1.1 MD05G1127600.v1.1 MD05G1127900.v1.1 MD05G1128000.v1.1 MD05G1128100.v1.1
prunus_persica	Prupe.8G171000_v2.0.a1 Prupe.8G171100_v2.0.a1 Prupe.8G171400_v2.0.a1 Prupe.8G171900_v2.0.a1 Prupe.8G172000_v2.0.a1
pyrus_communis	pycom05g12360 pycom05g12370 pycom05g12400
rosa_chinensis	RchiOBHm_Chr6g0279261 RchiOBHm_Chr6g0279331 RchiOBHm_Chr6g0279441
rosa_laevigata	RLG00000013151 RLG00000013152
rosa_multiflora	Rmu_sc0009584.1_g000002 Rmu_sc0026652.1_g000001
rosa_roxburghii	Rroxscaffold_7G00188960 Rroxscaffold_7G00188980 Rroxscaffold_7G00189010
rosa_rugosa	Rorug06G0124200 Rorug06G0124200
rosa_samantha	Rh6AG232600 Rh6AG232800 Rh6AG233200 Rh6BG237200 Rh6BG237500 Rh6CG239300 Rh6CG239700
rosa_wichuraiana	Rw6G020330 Rw6G020360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	376
AccI	GTMKAC	1 cut(s)	1018
AccII	CGCG	1 cut(s)	95
AccIII	TCCGGA	1 cut(s)	320
AciI	CCGC	6 cut(s)	95, 211, 304, 338, 703, 805
AclWI	GGATC	1 cut(s)	188
AcoI	YGGCCR	1 cut(s)	471
AcuI	CTGAAG	2 cut(s)	150, 833
AfaI	GTAC	2 cut(s)	231, 441
AflIII	ACRYGT	1 cut(s)	726
AgsI	TTSAA	8 cut(s)	89, 140, 247, 407, 499, 568, 650, 1061
AhlI	ACTAGT	1 cut(s)	583
AjuI	GAANNNNNNNTTGG	2 cut(s)	1041, 1073
AluBI	AGCT	9 cut(s)	118, 128, 172, 462, 493, 830, 869, 907, 1064
AluI	AGCT	9 cut(s)	118, 128, 172, 462, 493, 830, 869, 907, 1064
Alw21I	GWGCWC	2 cut(s)	120, 174
Alw26I	GTCTC	3 cut(s)	685, 783, 913
AlwI	GGATC	1 cut(s)	188
Ama87I	CYCGRG	2 cut(s)	399, 998
Aor13HI	TCCGGA	1 cut(s)	320
AoxI	GGCC	1 cut(s)	471
Asp700I	GAANNNNTTC	2 cut(s)	831, 993
AspLEI	GCGC	1 cut(s)	621
AspS9I	GGNCC	2 cut(s)	451, 972
AsuHPI	GGTGA	4 cut(s)	194, 285, 865, 949
AvaI	CYCGRG	2 cut(s)	399, 998
AvaII	GGWCC	2 cut(s)	451, 972
BalI	TGGCCA	1 cut(s)	473
BanI	GGYRCC	1 cut(s)	376
BanII	GRGCYC	2 cut(s)	120, 174
Bbv12I	GWGCWC	2 cut(s)	120, 174
BcgI	CGANNNNNNTGC	2 cut(s)	907, 941
BclI	TGATCA	2 cut(s)	481, 855
BcoDI	GTCTC	3 cut(s)	685, 783, 913
BcuI	ACTAGT	1 cut(s)	583
BfaI	CTAG	2 cut(s)	227, 584
BfmI	CTRYAG	1 cut(s)	837
BisI	GCNGC	1 cut(s)	339
BlsI	GCNGC	1 cut(s)	340
Bme18I	GGWCC	2 cut(s)	451, 972
BmeT110I	CYCGRG	2 cut(s)	399, 998
BmgT120I	GGNCC	2 cut(s)	451, 972
BmiI	GGNNCC	2 cut(s)	274, 378
BmrI	ACTGGG	1 cut(s)	793
BmsI	GCATC	9 cut(s)	179, 222, 508, 663, 676, 742, 810, 816, 915
BmuI	ACTGGG	1 cut(s)	793
BpmI	CTGGAG	1 cut(s)	374
BsaJI	CCNNGG	5 cut(s)	51, 145, 380, 641, 975
BsaWI	WCCGGW	1 cut(s)	320
Bse1I	ACTGG	3 cut(s)	425, 788, 958
Bse3DI	GCAATG	1 cut(s)	513
BseAI	TCCGGA	1 cut(s)	320
BseDI	CCNNGG	5 cut(s)	51, 145, 380, 641, 975
BseGI	GGATG	3 cut(s)	64, 801, 807
BseMI	GCAATG	1 cut(s)	513
BseMII	CTCAG	1 cut(s)	704
BseNI	ACTGG	3 cut(s)	425, 788, 958
BsgI	GTGCAG	1 cut(s)	841
Bsh1236I	CGCG	1 cut(s)	95
BshFI	GGCC	1 cut(s)	473
BshNI	GGYRCC	1 cut(s)	376
BsiHKAI	GWGCWC	2 cut(s)	120, 174
BsiHKCI	CYCGRG	2 cut(s)	399, 998
BsiSI	CCGG	1 cut(s)	321
BslFI	GGGAC	2 cut(s)	286, 622
BsmAI	GTCTC	3 cut(s)	685, 783, 913
BsmBI	CGTCTC	1 cut(s)	783
BsmFI	GGGAC	2 cut(s)	286, 622
BsnI	GGCC	1 cut(s)	473
BsoBI	CYCGRG	2 cut(s)	399, 998
Bsp1286I	GDGCHC	2 cut(s)	120, 174
Bsp13I	TCCGGA	1 cut(s)	320
Bsp143I	GATC	6 cut(s)	193, 345, 481, 664, 855, 942
Bsp19I	CCATGG	2 cut(s)	380, 975
BspACI	CCGC	6 cut(s)	95, 211, 304, 338, 703, 805
BspANI	GGCC	1 cut(s)	473
BspCNI	CTCAG	1 cut(s)	703
BspEI	TCCGGA	1 cut(s)	320
BspFNI	CGCG	1 cut(s)	95
BspHI	TCATGA	2 cut(s)	216, 778
BspLI	GGNNCC	2 cut(s)	274, 378
BspPI	GGATC	1 cut(s)	188
BspQI	GCTCTTC	1 cut(s)	500
BspT107I	GGYRCC	1 cut(s)	376
BsrDI	GCAATG	1 cut(s)	513
BsrI	ACTGG	3 cut(s)	425, 788, 958
BssECI	CCNNGG	5 cut(s)	51, 145, 380, 641, 975
BssMI	GATC	6 cut(s)	193, 345, 481, 664, 855, 942
BssT1I	CCWWGG	4 cut(s)	51, 380, 641, 975
Bst4CI	ACNGT	1 cut(s)	446
Bst6I	CTCTTC	3 cut(s)	27, 181, 500
BstC8I	GCNNGC	3 cut(s)	375, 537, 1009
BstDEI	CTNAG	4 cut(s)	166, 392, 416, 690
BstDSI	CCRYGG	3 cut(s)	145, 380, 975
BstF5I	GGATG	3 cut(s)	64, 801, 807
BstFNI	CGCG	1 cut(s)	95
BstHHI	GCGC	1 cut(s)	621
BstKTI	GATC	6 cut(s)	196, 348, 484, 667, 858, 945
BstMAI	GTCTC	3 cut(s)	685, 783, 913
BstMBI	GATC	6 cut(s)	193, 345, 481, 664, 855, 942
BstMWI	GCNNNNNNNGC	3 cut(s)	518, 527, 536
BstNSI	RCATGY	2 cut(s)	50, 730
BstSFI	CTRYAG	1 cut(s)	837
BstUI	CGCG	1 cut(s)	95
BsuRI	GGCC	1 cut(s)	473
BtgI	CCRYGG	3 cut(s)	145, 380, 975
BtsCI	GGATG	3 cut(s)	64, 801, 807
BtsIMutI	CAGTG	2 cut(s)	341, 432
Cac8I	GCNNGC	3 cut(s)	375, 537, 1009
CciI	TCATGA	2 cut(s)	216, 778
CfoI	GCGC	1 cut(s)	621
Cfr13I	GGNCC	2 cut(s)	451, 972
Csp6I	GTAC	2 cut(s)	230, 440
CviQI	GTAC	2 cut(s)	230, 440
DdeI	CTNAG	4 cut(s)	166, 392, 416, 690
DpnI	GATC	6 cut(s)	195, 347, 483, 666, 857, 944
DpnII	GATC	6 cut(s)	193, 345, 481, 664, 855, 942
EaeI	YGGCCR	1 cut(s)	471
Eam1104I	CTCTTC	3 cut(s)	27, 181, 500
EarI	CTCTTC	3 cut(s)	27, 181, 500
Ecl136II	GAGCTC	2 cut(s)	118, 172
Eco130I	CCWWGG	4 cut(s)	51, 380, 641, 975
Eco24I	GRGCYC	2 cut(s)	120, 174
Eco47I	GGWCC	2 cut(s)	451, 972
Eco53kI	GAGCTC	2 cut(s)	118, 172
Eco57I	CTGAAG	2 cut(s)	150, 833
Eco88I	CYCGRG	2 cut(s)	399, 998
EcoICRI	GAGCTC	2 cut(s)	118, 172
EcoO109I	RGGNCCY	1 cut(s)	451
EcoT14I	CCWWGG	4 cut(s)	51, 380, 641, 975
EcoT38I	GRGCYC	2 cut(s)	120, 174
ErhI	CCWWGG	4 cut(s)	51, 380, 641, 975
Esp3I	CGTCTC	1 cut(s)	783
FalI	AAGNNNNNCTT	2 cut(s)	399, 431
FaqI	GGGAC	2 cut(s)	286, 622
FauI	CCCGC	1 cut(s)	311
FbaI	TGATCA	2 cut(s)	481, 855
FblI	GTMKAC	1 cut(s)	1018
Fnu4HI	GCNGC	1 cut(s)	339
FokI	GGATG	3 cut(s)	71, 788, 794
FriOI	GRGCYC	2 cut(s)	120, 174
Fsp4HI	GCNGC	1 cut(s)	339
FspBI	CTAG	2 cut(s)	227, 584
GlaI	GCGC	1 cut(s)	620
GluI	GCNGC	1 cut(s)	339
GsuI	CTGGAG	1 cut(s)	374
HaeIII	GGCC	1 cut(s)	473
HapII	CCGG	1 cut(s)	321
HhaI	GCGC	1 cut(s)	621
Hin6I	GCGC	1 cut(s)	619
HinP1I	GCGC	1 cut(s)	619
HincII	GTYRAC	1 cut(s)	1019
HindII	GTYRAC	1 cut(s)	1019
HindIII	AAGCTT	1 cut(s)	1062
HinfI	GANTC	2 cut(s)	421, 646
HpaII	CCGG	1 cut(s)	321
HphI	GGTGA	4 cut(s)	194, 285, 865, 949
Hpy166II	GTNNAC	2 cut(s)	442, 1019
Hpy188I	TCNGA	5 cut(s)	122, 366, 685, 693, 744
Hpy188III	TCNNGA	5 cut(s)	217, 321, 399, 779, 811
Hpy8I	GTNNAC	2 cut(s)	442, 1019
HpyAV	CCTTC	3 cut(s)	207, 739, 844
HpyCH4III	ACNGT	1 cut(s)	446
HpyCH4V	TGCA	5 cut(s)	287, 521, 539, 801, 822
HpyF10VI	GCNNNNNNNGC	3 cut(s)	518, 527, 536
HpyF3I	CTNAG	4 cut(s)	166, 392, 416, 690
HspAI	GCGC	1 cut(s)	619
Kpn2I	TCCGGA	1 cut(s)	320
Ksp22I	TGATCA	2 cut(s)	481, 855
Kzo9I	GATC	6 cut(s)	193, 345, 481, 664, 855, 942
LguI	GCTCTTC	1 cut(s)	500
LmnI	GCTCC	2 cut(s)	278, 459
LweI	GCATC	9 cut(s)	179, 222, 508, 663, 676, 742, 810, 816, 915
MaeI	CTAG	2 cut(s)	227, 584
MalI	GATC	6 cut(s)	195, 347, 483, 666, 857, 944
MboI	GATC	6 cut(s)	193, 345, 481, 664, 855, 942
MboII	GAAGA	9 cut(s)	17, 44, 50, 53, 168, 487, 659, 767, 826
MfeI	CAATTG	1 cut(s)	135
MhlI	GDGCHC	2 cut(s)	120, 174
MlsI	TGGCCA	1 cut(s)	473
MluCI	AATT	3 cut(s)	135, 266, 759
MluNI	TGGCCA	1 cut(s)	473
MmeI	TCCRAC	2 cut(s)	389, 697
Mox20I	TGGCCA	1 cut(s)	473
MroI	TCCGGA	1 cut(s)	320
MroXI	GAANNNNTTC	2 cut(s)	831, 993
MscI	TGGCCA	1 cut(s)	473
MseI	TTAA	3 cut(s)	185, 546, 1072
MslI	CAYNNNNRTG	1 cut(s)	938
Msp20I	TGGCCA	1 cut(s)	473
MspI	CCGG	1 cut(s)	321
MunI	CAATTG	1 cut(s)	135
MvnI	CGCG	1 cut(s)	95
MwoI	GCNNNNNNNGC	3 cut(s)	518, 527, 536
NcoI	CCATGG	2 cut(s)	380, 975
NdeII	GATC	6 cut(s)	193, 345, 481, 664, 855, 942
NlaIV	GGNNCC	2 cut(s)	274, 378
NspI	RCATGY	2 cut(s)	50, 730
PagI	TCATGA	2 cut(s)	216, 778
PciI	ACATGT	1 cut(s)	726
PciSI	GCTCTTC	1 cut(s)	500
PdmI	GAANNNNTTC	2 cut(s)	831, 993
PfeI	GAWTC	2 cut(s)	421, 646
PkrI	GCNGC	1 cut(s)	340
PpuMI	RGGWCCY	1 cut(s)	451
PscI	ACATGT	1 cut(s)	726
Psp124BI	GAGCTC	2 cut(s)	120, 174
Psp5II	RGGWCCY	1 cut(s)	451
PspN4I	GGNNCC	2 cut(s)	274, 378
PspPI	GGNCC	2 cut(s)	451, 972
PspPPI	RGGWCCY	1 cut(s)	451
RsaI	GTAC	2 cut(s)	231, 441
RsaNI	GTAC	2 cut(s)	230, 440
RseI	CAYNNNNRTG	1 cut(s)	938
SacI	GAGCTC	2 cut(s)	120, 174
SalI	GTCGAC	1 cut(s)	1017
SapI	GCTCTTC	1 cut(s)	500
SaqAI	TTAA	3 cut(s)	185, 546, 1072
SatI	GCNGC	1 cut(s)	339
Sau3AI	GATC	6 cut(s)	193, 345, 481, 664, 855, 942
Sau96I	GGNCC	2 cut(s)	451, 972
SduI	GDGCHC	2 cut(s)	120, 174
SfaNI	GCATC	9 cut(s)	179, 222, 508, 663, 676, 742, 810, 816, 915
SfcI	CTRYAG	1 cut(s)	837
SinI	GGWCC	2 cut(s)	451, 972
SmiMI	CAYNNNNRTG	1 cut(s)	938
SpeI	ACTAGT	1 cut(s)	583
Sse9I	AATT	3 cut(s)	135, 266, 759
SsiI	CCGC	6 cut(s)	95, 211, 304, 338, 703, 805
SspI	AATATT	1 cut(s)	243
SspMI	CTAG	2 cut(s)	227, 584
SstI	GAGCTC	2 cut(s)	120, 174
StyI	CCWWGG	4 cut(s)	51, 380, 641, 975
TaaI	ACNGT	1 cut(s)	446
TaqI	TCGA	1 cut(s)	1018
TasI	AATT	3 cut(s)	135, 266, 759
TatI	WGTACW	2 cut(s)	229, 439
TauI	GCSGC	1 cut(s)	341
TfiI	GAWTC	2 cut(s)	421, 646
Tru1I	TTAA	3 cut(s)	185, 546, 1072
Tru9I	TTAA	3 cut(s)	185, 546, 1072
TscAI	CASTG	2 cut(s)	348, 432
TspDTI	ATGAA	3 cut(s)	516, 767, 1028
TspRI	CASTG	2 cut(s)	348, 432
VpaK11BI	GGWCC	2 cut(s)	451, 972
XceI	RCATGY	2 cut(s)	50, 730
XmiI	GTMKAC	1 cut(s)	1018
XmnI	GAANNNNTTC	2 cut(s)	831, 993
XspI	CTAG	2 cut(s)	227, 584

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.