Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0002826

Physical Location & Seq

Genomic Coordinates Reverse (-)

25070839 .. 25072037

Gene Structure 1199 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1127400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGACACTCTTAGAGCTCTCGTCTGCTCTAAGTTGTGATCCTTCTCGCCTATACCGCGTCATGAGGGTACTAGTCCACCTCAAAATATTCAAAGAAAAACCAACGGAATTAGGCCCCAAAGGTTATGCACAAAAACCTTTGTCCAAACGGCTATTAAAATCCGGAGAAAATAGCGTGGCTGCGTTCATTTTGCTCGAGAGTAGCCCAGTAATGCTGGCATCATGGCACGGCCTAAATTTATGGAGCTTTGCCGCCGCCAATCCTGATCACAGCAAGCTCATCAATGATGCAATGGCTTGTGATGCAAGGGTAGATGTGCCTACAGTGATTGAAAGCTGTTTAGAGGTGTTCAAAGGGCTCGAGACAATAGTAGGTGTGGGTGGTGGTAATGGGACTACGTTGTGCTTGTTGGTCGAGACTTGTCCGTGGATTCGAGGCATCAACTTTGATCTTCCTTATGTTGTGTATGTTGCTCAGGAGTGTGATCGGATTGAGAATGTCGGAGTGGGTTCTTCACAACTAGGGAGACGACGACTGTATTCGTATCCTAAAAAGTGCAGAGAAGCTATTCTGAACGATAGAGGGAAAGTTATAATCATAGAAGCTGTGATCGAAGATGGAAAAGAAGAAAACAAGCTAGCAGATGTGAGATTGATGCTAGGCATGGTGATGCTGGCCCATACAAACACAGGCAAAGAAAGGACCTTGAAGGAATGGGGATATGTTCTTGGAGAGGCTGGATTTAGCCGATACACAATCACACCTATTCATGCGGTCCAATCAATGATTCAAGCTTTTCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0008757 GO:0009058 GO:0009987 GO:0010817 GO:0016740 GO:0016741 GO:0017096 GO:0017144 GO:0018130 GO:0019438 GO:0030186 GO:0030187 GO:0032259 GO:0034641 GO:0034754 GO:0042430 GO:0042435 GO:0042445 GO:0042446 GO:0043603 GO:0043604 GO:0044237 GO:0044249 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0065007 GO:0065008 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dimerisation Methyltransf_2

Protein Analysis

268

Amino Acids

29.54

Weight (kDa)

8.11

Isoelectric Point (pI)

37.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dimerisation	PF08100	1 - 54	1.6e-07	O-methyltransferase dimerisation domain
Methyltransf_2	PF00891	72 - 161	3.4e-11	O-methyltransferase domain
Methyltransf_2	PF00891	184 - 249	2.9e-08	O-methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002826)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35150 AT4G35160
fragaria_vesca	FvH4_2g15840 FvH4_2g15880 FvH4_2g15880
malus_domestica	MD05G1127400.v1.1 MD05G1127600.v1.1 MD05G1127900.v1.1 MD05G1128000.v1.1 MD05G1128100.v1.1
prunus_persica	Prupe.8G171000_v2.0.a1 Prupe.8G171100_v2.0.a1 Prupe.8G171400_v2.0.a1 Prupe.8G171900_v2.0.a1 Prupe.8G172000_v2.0.a1
pyrus_communis	pycom05g12360 pycom05g12370 pycom05g12400
rosa_chinensis	RchiOBHm_Chr6g0279261 RchiOBHm_Chr6g0279331 RchiOBHm_Chr6g0279441
rosa_laevigata	RLG00000013151 RLG00000013152
rosa_multiflora	Rmu_sc0009584.1_g000002 Rmu_sc0026652.1_g000001
rosa_roxburghii	Rroxscaffold_7G00188960 Rroxscaffold_7G00188980 Rroxscaffold_7G00189010
rosa_rugosa	Rorug06G0124200 Rorug06G0124200
rosa_samantha	Rh6AG232600 Rh6AG232800 Rh6AG233200 Rh6BG237200 Rh6BG237500 Rh6CG239300 Rh6CG239700
rosa_wichuraiana	Rw6G020330 Rw6G020360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	593
AccII	CGCG	1 cut(s)	57
AccIII	TCCGGA	1 cut(s)	161
AciI	CCGC	4 cut(s)	55, 252, 255, 773
AclWI	GGATC	1 cut(s)	32
AcsI	RAATTY	1 cut(s)	235
AfaI	GTAC	1 cut(s)	69
AgsI	TTSAA	5 cut(s)	91, 332, 352, 709, 791
AhlI	ACTAGT	1 cut(s)	70
AjuI	GAANNNNNNNTTGG	2 cut(s)	771, 803
AluBI	AGCT	8 cut(s)	16, 246, 277, 336, 566, 605, 637, 794
AluI	AGCT	8 cut(s)	16, 246, 277, 336, 566, 605, 637, 794
Alw21I	GWGCWC	1 cut(s)	18
Alw26I	GTCTC	3 cut(s)	356, 410, 520
AlwI	GGATC	1 cut(s)	32
Ama87I	CYCGRG	2 cut(s)	194, 359
Aor13HI	TCCGGA	1 cut(s)	161
AoxI	GGCC	3 cut(s)	112, 229, 675
ApeKI	GCWGC	1 cut(s)	179
ApoI	RAATTY	1 cut(s)	235
Asp700I	GAANNNNTTC	1 cut(s)	567
AspS9I	GGNCC	4 cut(s)	113, 676, 702, 775
AsuHPI	GGTGA	1 cut(s)	679
AsuNHI	GCTAGC	1 cut(s)	637
AvaI	CYCGRG	2 cut(s)	194, 359
AvaII	GGWCC	2 cut(s)	702, 775
BanII	GRGCYC	2 cut(s)	18, 360
Bbv12I	GWGCWC	1 cut(s)	18
BbvI	GCAGC	1 cut(s)	166
BccI	CCATC	1 cut(s)	611
BceAI	ACGGC	2 cut(s)	164, 244
BciVI	GTATCC	1 cut(s)	555
BclI	TGATCA	1 cut(s)	265
BcoDI	GTCTC	3 cut(s)	356, 410, 520
BcuI	ACTAGT	1 cut(s)	70
BfaI	CTAG	4 cut(s)	71, 521, 638, 659
BfmI	CTRYAG	1 cut(s)	321
BfuI	GTATCC	1 cut(s)	555
BisI	GCNGC	3 cut(s)	180, 252, 255
BlsI	GCNGC	3 cut(s)	181, 253, 256
Bme18I	GGWCC	2 cut(s)	702, 775
BmeT110I	CYCGRG	2 cut(s)	194, 359
BmgT120I	GGNCC	4 cut(s)	113, 676, 702, 775
BmiI	GGNNCC	1 cut(s)	115
BmrI	ACTGGG	1 cut(s)	200
BmsI	GCATC	6 cut(s)	227, 277, 292, 447, 645, 660
BmtI	GCTAGC	1 cut(s)	641
BmuI	ACTGGG	1 cut(s)	200
Bpu10I	CCTNAGC	1 cut(s)	474
BsaJI	CCNNGG	1 cut(s)	425
BsaWI	WCCGGW	1 cut(s)	161
Bse1I	ACTGG	1 cut(s)	206
Bse3DI	GCAATG	1 cut(s)	297
BseAI	TCCGGA	1 cut(s)	161
BseDI	CCNNGG	1 cut(s)	425
BseMI	GCAATG	1 cut(s)	297
BseMII	CTCAG	1 cut(s)	488
BseNI	ACTGG	1 cut(s)	206
BseXI	GCAGC	1 cut(s)	166
BsgI	GTGCAG	1 cut(s)	577
Bsh1236I	CGCG	1 cut(s)	57
BshFI	GGCC	3 cut(s)	114, 231, 677
BsiHKAI	GWGCWC	1 cut(s)	18
BsiHKCI	CYCGRG	2 cut(s)	194, 359
BsiSI	CCGG	1 cut(s)	162
BslFI	GGGAC	1 cut(s)	406
BsmAI	GTCTC	3 cut(s)	356, 410, 520
BsmBI	CGTCTC	1 cut(s)	520
BsmFI	GGGAC	1 cut(s)	406
BsnI	GGCC	3 cut(s)	114, 231, 677
BsoBI	CYCGRG	2 cut(s)	194, 359
Bsp1286I	GDGCHC	2 cut(s)	18, 360
Bsp13I	TCCGGA	1 cut(s)	161
Bsp143I	GATC	5 cut(s)	37, 265, 448, 484, 609
BspACI	CCGC	4 cut(s)	55, 252, 255, 773
BspANI	GGCC	3 cut(s)	114, 231, 677
BspCNI	CTCAG	1 cut(s)	487
BspEI	TCCGGA	1 cut(s)	161
BspFNI	CGCG	1 cut(s)	57
BspHI	TCATGA	1 cut(s)	60
BspLI	GGNNCC	1 cut(s)	115
BspOI	GCTAGC	1 cut(s)	641
BspPI	GGATC	1 cut(s)	32
BsrDI	GCAATG	1 cut(s)	297
BsrI	ACTGG	1 cut(s)	206
BssECI	CCNNGG	1 cut(s)	425
BssMI	GATC	5 cut(s)	37, 265, 448, 484, 609
Bst4CI	ACNGT	2 cut(s)	325, 537
BstC8I	GCNNGC	4 cut(s)	216, 275, 639, 675
BstDEI	CTNAG	3 cut(s)	10, 29, 474
BstDSI	CCRYGG	1 cut(s)	425
BstFNI	CGCG	1 cut(s)	57
BstKTI	GATC	5 cut(s)	40, 268, 451, 487, 612
BstMAI	GTCTC	3 cut(s)	356, 410, 520
BstMBI	GATC	5 cut(s)	37, 265, 448, 484, 609
BstMWI	GCNNNNNNNGC	2 cut(s)	54, 302
BstSFI	CTRYAG	1 cut(s)	321
BstUI	CGCG	1 cut(s)	57
BstV1I	GCAGC	1 cut(s)	166
BsuI	GTATCC	1 cut(s)	555
BsuRI	GGCC	3 cut(s)	114, 231, 677
BtgI	CCRYGG	1 cut(s)	425
BtsIMutI	CAGTG	1 cut(s)	330
Cac8I	GCNNGC	4 cut(s)	216, 275, 639, 675
CciI	TCATGA	1 cut(s)	60
Cfr13I	GGNCC	4 cut(s)	113, 676, 702, 775
CseI	GACGC	1 cut(s)	46
Csp6I	GTAC	1 cut(s)	68
CviAII	CATG	4 cut(s)	61, 222, 664, 770
CviQI	GTAC	1 cut(s)	68
DdeI	CTNAG	3 cut(s)	10, 29, 474
DpnI	GATC	5 cut(s)	39, 267, 450, 486, 611
DpnII	GATC	5 cut(s)	37, 265, 448, 484, 609
Ecl136II	GAGCTC	1 cut(s)	16
Eco24I	GRGCYC	2 cut(s)	18, 360
Eco47I	GGWCC	2 cut(s)	702, 775
Eco53kI	GAGCTC	1 cut(s)	16
Eco88I	CYCGRG	2 cut(s)	194, 359
EcoICRI	GAGCTC	1 cut(s)	16
EcoO109I	RGGNCCY	2 cut(s)	113, 702
EcoT38I	GRGCYC	2 cut(s)	18, 360
Esp3I	CGTCTC	1 cut(s)	520
FaeI	CATG	4 cut(s)	64, 225, 667, 773
FaqI	GGGAC	1 cut(s)	406
FatI	CATG	4 cut(s)	60, 221, 663, 769
FbaI	TGATCA	1 cut(s)	265
Fnu4HI	GCNGC	3 cut(s)	180, 252, 255
FriOI	GRGCYC	2 cut(s)	18, 360
Fsp4HI	GCNGC	3 cut(s)	180, 252, 255
FspBI	CTAG	4 cut(s)	71, 521, 638, 659
GluI	GCNGC	3 cut(s)	180, 252, 255
HaeIII	GGCC	3 cut(s)	114, 231, 677
HapII	CCGG	1 cut(s)	162
HgaI	GACGC	1 cut(s)	46
Hin1II	CATG	4 cut(s)	64, 225, 667, 773
HindIII	AAGCTT	1 cut(s)	792
HinfI	GANTC	2 cut(s)	430, 787
HpaII	CCGG	1 cut(s)	162
HphI	GGTGA	1 cut(s)	679
Hpy166II	GTNNAC	1 cut(s)	76
Hpy188I	TCNGA	3 cut(s)	489, 503, 573
Hpy188III	TCNNGA	7 cut(s)	61, 162, 196, 263, 361, 415, 476
Hpy8I	GTNNAC	1 cut(s)	76
Hpy99I	CGWCG	1 cut(s)	534
HpyAV	CCTTC	2 cut(s)	51, 703
HpyCH4III	ACNGT	2 cut(s)	325, 537
HpyCH4IV	ACGT	1 cut(s)	398
HpyCH4V	TGCA	4 cut(s)	128, 290, 305, 558
HpyF10VI	GCNNNNNNNGC	2 cut(s)	54, 302
HpyF3I	CTNAG	3 cut(s)	10, 29, 474
HpySE526I	ACGT	1 cut(s)	398
Hsp92II	CATG	4 cut(s)	64, 225, 667, 773
Kpn2I	TCCGGA	1 cut(s)	161
Ksp22I	TGATCA	1 cut(s)	265
Kzo9I	GATC	5 cut(s)	37, 265, 448, 484, 609
LmnI	GCTCC	1 cut(s)	243
LpnPI	CCDG	8 cut(s)	175, 200, 219, 276, 461, 659, 675, 723
Lsp1109I	GCAGC	1 cut(s)	166
LweI	GCATC	6 cut(s)	227, 277, 292, 447, 645, 660
MaeI	CTAG	4 cut(s)	71, 521, 638, 659
MaeII	ACGT	1 cut(s)	398
MalI	GATC	5 cut(s)	39, 267, 450, 486, 611
MboI	GATC	5 cut(s)	37, 265, 448, 484, 609
MboII	GAAGA	4 cut(s)	443, 504, 626, 638
MhlI	GDGCHC	2 cut(s)	18, 360
MluCI	AATT	2 cut(s)	107, 235
MmeI	TCCRAC	1 cut(s)	481
MnlI	CCTC	6 cut(s)	57, 89, 337, 428, 575, 727
MroI	TCCGGA	1 cut(s)	161
MroXI	GAANNNNTTC	1 cut(s)	567
MseI	TTAA	1 cut(s)	155
MslI	CAYNNNNRTG	1 cut(s)	668
MspI	CCGG	1 cut(s)	162
MvnI	CGCG	1 cut(s)	57
MwoI	GCNNNNNNNGC	2 cut(s)	54, 302
NdeII	GATC	5 cut(s)	37, 265, 448, 484, 609
NheI	GCTAGC	1 cut(s)	637
NlaIII	CATG	4 cut(s)	64, 225, 667, 773
NlaIV	GGNNCC	1 cut(s)	115
PaeR7I	CTCGAG	2 cut(s)	194, 359
PagI	TCATGA	1 cut(s)	60
PdmI	GAANNNNTTC	1 cut(s)	567
PfeI	GAWTC	2 cut(s)	430, 787
PkrI	GCNGC	3 cut(s)	181, 253, 256
PpuMI	RGGWCCY	1 cut(s)	702
PsiI	TTATAA	1 cut(s)	593
Psp124BI	GAGCTC	1 cut(s)	18
Psp5II	RGGWCCY	1 cut(s)	702
PspN4I	GGNNCC	1 cut(s)	115
PspPI	GGNCC	4 cut(s)	113, 676, 702, 775
PspPPI	RGGWCCY	1 cut(s)	702
RsaI	GTAC	1 cut(s)	69
RsaNI	GTAC	1 cut(s)	68
RseI	CAYNNNNRTG	1 cut(s)	668
SacI	GAGCTC	1 cut(s)	18
SaqAI	TTAA	1 cut(s)	155
SatI	GCNGC	3 cut(s)	180, 252, 255
Sau3AI	GATC	5 cut(s)	37, 265, 448, 484, 609
Sau96I	GGNCC	4 cut(s)	113, 676, 702, 775
SduI	GDGCHC	2 cut(s)	18, 360
SfaNI	GCATC	6 cut(s)	227, 277, 292, 447, 645, 660
SfcI	CTRYAG	1 cut(s)	321
Sfr274I	CTCGAG	2 cut(s)	194, 359
SinI	GGWCC	2 cut(s)	702, 775
SlaI	CTCGAG	2 cut(s)	194, 359
SmiMI	CAYNNNNRTG	1 cut(s)	668
SmlI	CTYRAG	2 cut(s)	194, 359
SmoI	CTYRAG	2 cut(s)	194, 359
SpeI	ACTAGT	1 cut(s)	70
Sse9I	AATT	2 cut(s)	107, 235
SsiI	CCGC	4 cut(s)	55, 252, 255, 773
SspI	AATATT	1 cut(s)	87
SspMI	CTAG	4 cut(s)	71, 521, 638, 659
SstI	GAGCTC	1 cut(s)	18
TaaI	ACNGT	2 cut(s)	325, 537
TaiI	ACGT	1 cut(s)	401
TaqI	TCGA	5 cut(s)	195, 360, 414, 433, 612
TasI	AATT	2 cut(s)	107, 235
TauI	GCSGC	2 cut(s)	254, 257
TfiI	GAWTC	2 cut(s)	430, 787
Tru1I	TTAA	1 cut(s)	155
Tru9I	TTAA	1 cut(s)	155
TscAI	CASTG	1 cut(s)	330
TseI	GCWGC	1 cut(s)	179
TspDTI	ATGAA	2 cut(s)	175, 758
TspGWI	ACGGA	2 cut(s)	119, 414
TspRI	CASTG	1 cut(s)	330
VpaK11BI	GGWCC	2 cut(s)	702, 775
XapI	RAATTY	1 cut(s)	235
XhoI	CTCGAG	2 cut(s)	194, 359
XmnI	GAANNNNTTC	1 cut(s)	567
XspI	CTAG	4 cut(s)	71, 521, 638, 659

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.