Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002826

Physical Location & Seq

Genomic Coordinates Reverse (-)

42571495 .. 42572404

Gene Structure 910 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ25059

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGATGATATGTGTTATGTCCATATTTGATCTTACAGCTAATCCTGGTCACAGCGAGCTTATCAATGAAGCAATGGCTTGTGATGCAAGCTTGGCACTGCCTGCGCTGATTGAGAGTTGTTTAGAGGTTTTCAATGGGATTGAGACCATAGTAGATGTGGGTGGTGGTAATGGAACTACTTTAGGATTGTTGGTTAAGGCCTGTCCTTGGATTGTTCGAGGGATCAATTTTGATCTTCCTCATGTTGTATCTGTTGCTGAGGAGAATGATCGAGTGGAGAATGTTGGAGGAGACATGTTTGATTGTATTCCAAAGGCCGATGCTGCAATTATCAAGTGGGTCCTTCATGATTGGGGAGATGAGGAGTGCATCCGTATACTGAAGAAATGTAATGAAGCAATTCCTGAGGACAAAGGGAAGGTGATAATTCTGGAAGCTGTTATTGAAGAAGATGAGATCAAAGACGAGCTAACCGATGTGAGATTGATGCTAGATATGGTGATGATGGCCCATACTAGCACTGGCAAAGAGAGGACCTTGAAGGAATGGGGATATGTTCTTGGGGAAGCTGGCTTTAGCCGACACACGGTCACACCTATTAATGCTGTCCAATCTGTTATCCAGGCTTTTCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0008757 GO:0009058 GO:0009987 GO:0010817 GO:0016740 GO:0016741 GO:0017096 GO:0017144 GO:0018130 GO:0019438 GO:0030186 GO:0030187 GO:0032259 GO:0034641 GO:0034754 GO:0042430 GO:0042435 GO:0042445 GO:0042446 GO:0043603 GO:0043604 GO:0044237 GO:0044249 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0065007 GO:0065008 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dimerisation Methyltransf_2

Protein Analysis

211

Amino Acids

23.1

Weight (kDa)

4.46

Isoelectric Point (pI)

35.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_2	PF00891	7 - 193	2.8e-44	O-methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002826)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35150 AT4G35160
fragaria_vesca	FvH4_2g15840 FvH4_2g15880 FvH4_2g15880
malus_domestica	MD05G1127400.v1.1 MD05G1127600.v1.1 MD05G1127900.v1.1 MD05G1128000.v1.1 MD05G1128100.v1.1
prunus_persica	Prupe.8G171000_v2.0.a1 Prupe.8G171100_v2.0.a1 Prupe.8G171400_v2.0.a1 Prupe.8G171900_v2.0.a1 Prupe.8G172000_v2.0.a1
pyrus_communis	pycom05g12360 pycom05g12370 pycom05g12400
rosa_chinensis	RchiOBHm_Chr6g0279261 RchiOBHm_Chr6g0279331 RchiOBHm_Chr6g0279441
rosa_laevigata	RLG00000013151 RLG00000013152
rosa_multiflora	Rmu_sc0009584.1_g000002 Rmu_sc0026652.1_g000001
rosa_roxburghii	Rroxscaffold_7G00188960 Rroxscaffold_7G00188980 Rroxscaffold_7G00189010
rosa_rugosa	Rorug06G0124200 Rorug06G0124200
rosa_samantha	Rh6AG232600 Rh6AG232800 Rh6AG233200 Rh6BG237200 Rh6BG237500 Rh6CG239300 Rh6CG239700
rosa_wichuraiana	Rw6G020330 Rw6G020360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	376
AclWI	GGATC	1 cut(s)	230
AcuI	CTGAAG	1 cut(s)	401
AfiI	CCNNNNNNNGG	2 cut(s)	207, 586
AflIII	ACRYGT	1 cut(s)	294
AgsI	TTSAA	3 cut(s)	133, 446, 541
AhdI	GACNNNNNGTC	1 cut(s)	587
AjnI	CCWGG	2 cut(s)	43, 621
AluBI	AGCT	6 cut(s)	38, 58, 90, 437, 469, 569
AluI	AGCT	6 cut(s)	38, 58, 90, 437, 469, 569
Alw26I	GTCTC	2 cut(s)	137, 285
AlwI	GGATC	1 cut(s)	230
AoxI	GGCC	3 cut(s)	198, 315, 507
ApeKI	GCWGC	1 cut(s)	323
AseI	ATTAAT	1 cut(s)	600
Asp700I	GAANNNNTTC	1 cut(s)	399
AspLEI	GCGC	1 cut(s)	106
AspS9I	GGNCC	3 cut(s)	340, 508, 534
AsuHPI	GGTGA	2 cut(s)	433, 511
AvaII	GGWCC	2 cut(s)	340, 534
AxyI	CCTNAGG	1 cut(s)	405
BbvCI	CCTCAGC	1 cut(s)	258
BbvI	GCAGC	1 cut(s)	310
BccI	CCATC	1 cut(s)	499
BciT130I	CCWGG	2 cut(s)	45, 623
BcoDI	GTCTC	2 cut(s)	137, 285
BfaI	CTAG	2 cut(s)	491, 516
BisI	GCNGC	1 cut(s)	324
BlsI	GCNGC	1 cut(s)	325
Bme1390I	CCNGG	2 cut(s)	45, 623
Bme18I	GGWCC	2 cut(s)	340, 534
BmeRI	GACNNNNNGTC	1 cut(s)	587
BmgT120I	GGNCC	3 cut(s)	340, 508, 534
BmiI	GGNNCC	1 cut(s)	341
BmrFI	CCNGG	2 cut(s)	45, 623
BmsI	GCATC	4 cut(s)	73, 310, 378, 477
Bpu10I	CCTNAGC	1 cut(s)	258
BsaI	GGTCTC	1 cut(s)	137
BsaJI	CCNNGG	1 cut(s)	206
Bsc4I	CCNNNNNNNGG	2 cut(s)	207, 586
Bse1I	ACTGG	1 cut(s)	526
Bse21I	CCTNAGG	1 cut(s)	405
Bse3DI	GCAATG	1 cut(s)	78
BseBI	CCWGG	2 cut(s)	45, 623
BseDI	CCNNGG	1 cut(s)	206
BseGI	GGATG	1 cut(s)	369
BseLI	CCNNNNNNNGG	2 cut(s)	207, 586
BseMI	GCAATG	1 cut(s)	78
BseMII	CTCAG	2 cut(s)	249, 396
BseNI	ACTGG	1 cut(s)	526
BseRI	GAGGAG	3 cut(s)	275, 303, 377
BseXI	GCAGC	1 cut(s)	310
BshFI	GGCC	3 cut(s)	200, 317, 509
BslI	CCNNNNNNNGG	2 cut(s)	207, 586
BsmAI	GTCTC	2 cut(s)	137, 285
BsnI	GGCC	3 cut(s)	200, 317, 509
Bso31I	GGTCTC	1 cut(s)	137
Bsp143I	GATC	5 cut(s)	28, 222, 232, 268, 456
BspANI	GGCC	3 cut(s)	200, 317, 509
BspCNI	CTCAG	2 cut(s)	250, 397
BspHI	TCATGA	1 cut(s)	346
BspLI	GGNNCC	1 cut(s)	341
BspPI	GGATC	1 cut(s)	230
BspTNI	GGTCTC	1 cut(s)	137
BsrDI	GCAATG	1 cut(s)	78
BsrI	ACTGG	1 cut(s)	526
BssECI	CCNNGG	1 cut(s)	206
BssMI	GATC	5 cut(s)	28, 222, 232, 268, 456
BssNAI	GTATAC	1 cut(s)	377
BssT1I	CCWWGG	1 cut(s)	206
Bst1107I	GTATAC	1 cut(s)	377
Bst2UI	CCWGG	2 cut(s)	45, 623
Bst4CI	ACNGT	1 cut(s)	589
BstAPI	GCANNNNNTGC	1 cut(s)	101
BstC8I	GCNNGC	4 cut(s)	56, 88, 102, 571
BstDEI	CTNAG	2 cut(s)	258, 405
BstF5I	GGATG	1 cut(s)	369
BstHHI	GCGC	1 cut(s)	106
BstKTI	GATC	5 cut(s)	31, 225, 235, 271, 459
BstMAI	GTCTC	2 cut(s)	137, 285
BstMBI	GATC	5 cut(s)	28, 222, 232, 268, 456
BstMWI	GCNNNNNNNGC	4 cut(s)	83, 92, 101, 323
BstNI	CCWGG	2 cut(s)	45, 623
BstNSI	RCATGY	1 cut(s)	298
BstSCI	CCNGG	2 cut(s)	43, 621
BstV1I	GCAGC	1 cut(s)	310
BstZ17I	GTATAC	1 cut(s)	377
Bsu36I	CCTNAGG	1 cut(s)	405
BsuRI	GGCC	3 cut(s)	200, 317, 509
BtsCI	GGATG	1 cut(s)	369
BtsI	GCAGTG	1 cut(s)	95
BtsIMutI	CAGTG	2 cut(s)	95, 519
Cac8I	GCNNGC	4 cut(s)	56, 88, 102, 571
CciI	TCATGA	1 cut(s)	346
CfoI	GCGC	1 cut(s)	106
Cfr13I	GGNCC	3 cut(s)	340, 508, 534
CviAII	CATG	3 cut(s)	242, 295, 347
DdeI	CTNAG	2 cut(s)	258, 405
DpnI	GATC	5 cut(s)	30, 224, 234, 270, 458
DpnII	GATC	5 cut(s)	28, 222, 232, 268, 456
DriI	GACNNNNNGTC	1 cut(s)	587
Eam1105I	GACNNNNNGTC	1 cut(s)	587
Eco130I	CCWWGG	1 cut(s)	206
Eco147I	AGGCCT	1 cut(s)	200
Eco31I	GGTCTC	1 cut(s)	137
Eco47I	GGWCC	2 cut(s)	340, 534
Eco57I	CTGAAG	1 cut(s)	401
Eco81I	CCTNAGG	1 cut(s)	405
EcoO109I	RGGNCCY	2 cut(s)	340, 534
EcoRII	CCWGG	2 cut(s)	43, 621
EcoT14I	CCWWGG	1 cut(s)	206
ErhI	CCWWGG	1 cut(s)	206
FaeI	CATG	3 cut(s)	245, 298, 350
FatI	CATG	3 cut(s)	241, 294, 346
FblI	GTMKAC	1 cut(s)	376
Fnu4HI	GCNGC	1 cut(s)	324
FokI	GGATG	1 cut(s)	356
Fsp4HI	GCNGC	1 cut(s)	324
FspBI	CTAG	2 cut(s)	491, 516
GlaI	GCGC	1 cut(s)	105
GluI	GCNGC	1 cut(s)	324
HaeIII	GGCC	3 cut(s)	200, 317, 509
HhaI	GCGC	1 cut(s)	106
Hin1II	CATG	3 cut(s)	245, 298, 350
Hin6I	GCGC	1 cut(s)	104
HinP1I	GCGC	1 cut(s)	104
HindIII	AAGCTT	1 cut(s)	88
HphI	GGTGA	2 cut(s)	433, 511
Hpy166II	GTNNAC	1 cut(s)	377
Hpy188III	TCNNGA	3 cut(s)	347, 404, 431
Hpy8I	GTNNAC	1 cut(s)	377
HpyAV	CCTTC	3 cut(s)	353, 412, 535
HpyCH4III	ACNGT	1 cut(s)	589
HpyCH4V	TGCA	3 cut(s)	86, 326, 369
HpyF10VI	GCNNNNNNNGC	4 cut(s)	83, 92, 101, 323
HpyF3I	CTNAG	2 cut(s)	258, 405
Hsp92II	CATG	3 cut(s)	245, 298, 350
HspAI	GCGC	1 cut(s)	104
Kzo9I	GATC	5 cut(s)	28, 222, 232, 268, 456
LpnPI	CCDG	9 cut(s)	30, 57, 114, 214, 416, 417, 507, 555, 608
Lsp1109I	GCAGC	1 cut(s)	310
LweI	GCATC	4 cut(s)	73, 310, 378, 477
MaeI	CTAG	2 cut(s)	491, 516
MaeIII	GTNAC	2 cut(s)	47, 589
MalI	GATC	5 cut(s)	30, 224, 234, 270, 458
MboI	GATC	5 cut(s)	28, 222, 232, 268, 456
MboII	GAAGA	4 cut(s)	227, 394, 458, 461
MluCI	AATT	4 cut(s)	226, 327, 399, 426
MmeI	TCCRAC	1 cut(s)	265
MnlI	CCTC	8 cut(s)	118, 212, 249, 253, 281, 355, 400, 525
MroXI	GAANNNNTTC	1 cut(s)	399
MseI	TTAA	2 cut(s)	195, 600
MspR9I	CCNGG	2 cut(s)	45, 623
MvaI	CCWGG	2 cut(s)	45, 623
MwoI	GCNNNNNNNGC	4 cut(s)	83, 92, 101, 323
NdeII	GATC	5 cut(s)	28, 222, 232, 268, 456
NlaIII	CATG	3 cut(s)	245, 298, 350
NlaIV	GGNNCC	1 cut(s)	341
NmuCI	GTSAC	2 cut(s)	47, 589
NspI	RCATGY	1 cut(s)	298
PagI	TCATGA	1 cut(s)	346
PceI	AGGCCT	1 cut(s)	200
PciI	ACATGT	1 cut(s)	294
PcsI	WCGNNNNNNNCGW	1 cut(s)	471
PdmI	GAANNNNTTC	1 cut(s)	399
PkrI	GCNGC	1 cut(s)	325
PpuMI	RGGWCCY	2 cut(s)	340, 534
PscI	ACATGT	1 cut(s)	294
PshBI	ATTAAT	1 cut(s)	600
Psp5II	RGGWCCY	2 cut(s)	340, 534
Psp6I	CCWGG	2 cut(s)	43, 621
PspGI	CCWGG	2 cut(s)	43, 621
PspN4I	GGNNCC	1 cut(s)	341
PspPI	GGNCC	3 cut(s)	340, 508, 534
PspPPI	RGGWCCY	2 cut(s)	340, 534
SaqAI	TTAA	2 cut(s)	195, 600
SatI	GCNGC	1 cut(s)	324
Sau3AI	GATC	5 cut(s)	28, 222, 232, 268, 456
Sau96I	GGNCC	3 cut(s)	340, 508, 534
ScrFI	CCNGG	2 cut(s)	45, 623
SfaNI	GCATC	4 cut(s)	73, 310, 378, 477
SinI	GGWCC	2 cut(s)	340, 534
Sse9I	AATT	4 cut(s)	226, 327, 399, 426
SseBI	AGGCCT	1 cut(s)	200
SspMI	CTAG	2 cut(s)	491, 516
StuI	AGGCCT	1 cut(s)	200
StyD4I	CCNGG	2 cut(s)	43, 621
StyI	CCWWGG	1 cut(s)	206
TaaI	ACNGT	1 cut(s)	589
TaqI	TCGA	2 cut(s)	217, 271
TasI	AATT	4 cut(s)	226, 327, 399, 426
Tru1I	TTAA	2 cut(s)	195, 600
Tru9I	TTAA	2 cut(s)	195, 600
TscAI	CASTG	2 cut(s)	102, 526
TseFI	GTSAC	2 cut(s)	47, 589
TseI	GCWGC	1 cut(s)	323
Tsp45I	GTSAC	2 cut(s)	47, 589
TspDTI	ATGAA	3 cut(s)	81, 335, 408
TspGWI	ACGGA	1 cut(s)	362
TspRI	CASTG	2 cut(s)	102, 526
VpaK11BI	GGWCC	2 cut(s)	340, 534
VspI	ATTAAT	1 cut(s)	600
XceI	RCATGY	1 cut(s)	298
XcmI	CCANNNNNNNNNTGG	2 cut(s)	154, 518
XmiI	GTMKAC	1 cut(s)	376
XmnI	GAANNNNTTC	1 cut(s)	399
XspI	CTAG	2 cut(s)	491, 516

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.