Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0002826

Physical Location & Seq

Genomic Coordinates Reverse (-)

17533426 .. 17535088

Gene Structure 1663 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G171100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1164 bp

ATGTTAAGCACATTCGACTCCAATCTCTTCCTGCAAATTACATATACGCCTAAGACCCTAGGACAAACACACACACACAAAGATATGGAAGATAAACAAAGTAGAGAGTTAAGATCGGAAGAGGAAGAAGAAGAAGAGCATGCCAAAGTGGATGTCTGGAAATATGTTTTCGGGTTTGTTGAAATCGCAGTGGTGAAATGCGCCATTGAGCTCGGGATAGCTGATACAATTGAAAGCCATGGAAGCCCCATGACACTCTTAGAGCTCTCATCTGCTCTAAGATGTGATCCTTCTCCCCTTTACCGCATCATGAGGGTACTTGTCCACCTCAAAATATTCAAAGAGAAACCAGCAACCCAATTAGGCCCCAAAGTTTTTGCACAAACACCTTTGTCCAAATGGCTATTGAAATCCGGAGAAACAAGCATGTCTGCTTTAATTTTGCTAGAGAGTAGCCCGGTAATGCTGGCACCATGGCATGGCCTAAGTGCTCGAATTCAAGGTATTAGCAATCCAGCATTTGAAGCAGTACATGGAGAGGATGTATGGAGCTATGCCAAAGCCAATCCTGATCACAGCAAGCTTATCAACGAAGCAATGGCTTGTGATGCAAGGGTGGCGGTGCCTGCAGTGATTGAAAGTTGTTTAGAGGTGTTCAAAGGGATTGCGACAATTGTAGATGTGGGCGGGGGTGATGGGACTACTTTGCGCTTGTTGGTTGAGGCATGTCCTTGGGTCCAAGGCATCAACTTTGATCTTCCTCATGTTGTGTCTGTTGCTCAGGAGTGTGACCACATTAAGAATGTTGGAGGTGACATGTTTGATAGTGTTCCAAAGGCTGATGCTGTAATTATGAAGTGGGTTCTTCATGACTGGGGCGATGATGAGTGCATCCGTATCCTTAAGAAGTGCAGGGAAGCTATTCCGGAGAATAAAGGGAAGGTGATAATCGTAGAAGCGGTTATTGATGAAAAAGATGAGAAAGAGGACATCAAACTAACAAATGTGAGATTGATGCTAGACATGGTGATGATGGCCCATACAAACACAGGAAAAGAAAGGACCTTGAAGGAATGGGGATATGTTCTTGGGGAAGCTGGCTTCAGCCGACACACTATCACACCTATTCATGCTGTCCAATCCGTTATTCAGGCTTTTCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0008757 GO:0009058 GO:0009987 GO:0010817 GO:0016740 GO:0016741 GO:0017096 GO:0017144 GO:0018130 GO:0019438 GO:0030186 GO:0030187 GO:0032259 GO:0034641 GO:0034754 GO:0042430 GO:0042435 GO:0042445 GO:0042446 GO:0043603 GO:0043604 GO:0044237 GO:0044249 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0065007 GO:0065008 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dimerisation Methyltransf_2

Protein Analysis

388

Amino Acids

43.04

Weight (kDa)

5.36

Isoelectric Point (pI)

42.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002826)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35150 AT4G35160
fragaria_vesca	FvH4_2g15840 FvH4_2g15880 FvH4_2g15880
malus_domestica	MD05G1127400.v1.1 MD05G1127600.v1.1 MD05G1127900.v1.1 MD05G1128000.v1.1 MD05G1128100.v1.1
prunus_persica	Prupe.8G171000_v2.0.a1 Prupe.8G171100_v2.0.a1 Prupe.8G171400_v2.0.a1 Prupe.8G171900_v2.0.a1 Prupe.8G172000_v2.0.a1
pyrus_communis	pycom05g12360 pycom05g12370 pycom05g12400
rosa_chinensis	RchiOBHm_Chr6g0279261 RchiOBHm_Chr6g0279331 RchiOBHm_Chr6g0279441
rosa_laevigata	RLG00000013151 RLG00000013152
rosa_multiflora	Rmu_sc0009584.1_g000002 Rmu_sc0026652.1_g000001
rosa_roxburghii	Rroxscaffold_7G00188960 Rroxscaffold_7G00188980 Rroxscaffold_7G00189010
rosa_rugosa	Rorug06G0124200 Rorug06G0124200
rosa_samantha	Rh6AG232600 Rh6AG232800 Rh6AG233200 Rh6BG237200 Rh6BG237500 Rh6CG239300 Rh6CG239700
rosa_wichuraiana	Rw6G020330 Rw6G020360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	469, 622
AccB7I	CCANNNNNTGG	1 cut(s)	479
AccIII	TCCGGA	2 cut(s)	413, 925
AciI	CCGC	4 cut(s)	304, 620, 687, 959
AclWI	GGATC	1 cut(s)	281
AcsI	RAATTY	1 cut(s)	495
AcuI	CTGAAG	1 cut(s)	1087
AfaI	GTAC	2 cut(s)	318, 531
AfiI	CCNNNNNNNGG	1 cut(s)	479
AflII	CTTAAG	1 cut(s)	902
AflIII	ACRYGT	1 cut(s)	816
AgsI	TTSAA	9 cut(s)	182, 233, 340, 409, 500, 524, 638, 658, 1069
AjuI	GAANNNNNNNTTGG	2 cut(s)	1131, 1163
AluBI	AGCT	7 cut(s)	211, 221, 265, 552, 583, 920, 1097
AluI	AGCT	7 cut(s)	211, 221, 265, 552, 583, 920, 1097
Alw21I	GWGCWC	3 cut(s)	213, 267, 493
AlwI	GGATC	1 cut(s)	281
Ama87I	CYCGRG	1 cut(s)	212
Aor13HI	TCCGGA	2 cut(s)	413, 925
AoxI	GGCC	3 cut(s)	364, 481, 1035
ApoI	RAATTY	1 cut(s)	495
ArsI	GACNNNNNNTTYG	2 cut(s)	138, 170
Asp700I	GAANNNNTTC	1 cut(s)	921
AspA2I	CCTAGG	1 cut(s)	58
AspLEI	GCGC	2 cut(s)	203, 711
AspS9I	GGNCC	4 cut(s)	365, 736, 1036, 1062
AsuC2I	CCSGG	1 cut(s)	458
AsuHPI	GGTGA	5 cut(s)	205, 704, 824, 955, 1039
AvaI	CYCGRG	1 cut(s)	212
AvaII	GGWCC	2 cut(s)	736, 1062
AvrII	CCTAGG	1 cut(s)	58
BanI	GGYRCC	2 cut(s)	469, 622
BanII	GRGCYC	2 cut(s)	213, 267
Bbv12I	GWGCWC	3 cut(s)	213, 267, 493
BccI	CCATC	2 cut(s)	689, 1027
BciVI	GTATCC	1 cut(s)	908
BclI	TGATCA	1 cut(s)	571
BcnI	CCSGG	1 cut(s)	458
BfaI	CTAG	3 cut(s)	59, 446, 1019
BfmI	CTRYAG	1 cut(s)	627
BfrI	CTTAAG	1 cut(s)	902
BfuI	GTATCC	1 cut(s)	908
BlnI	CCTAGG	1 cut(s)	58
Bme1390I	CCNGG	1 cut(s)	458
Bme18I	GGWCC	2 cut(s)	736, 1062
BmeT110I	CYCGRG	1 cut(s)	212
BmgT120I	GGNCC	4 cut(s)	365, 736, 1036, 1062
BmiI	GGNNCC	4 cut(s)	367, 471, 624, 737
BmrFI	CCNGG	1 cut(s)	458
BmrI	ACTGGG	1 cut(s)	883
BmsI	GCATC	6 cut(s)	315, 598, 753, 832, 900, 1005
BmuI	ACTGGG	1 cut(s)	883
Bpu10I	CCTNAGC	1 cut(s)	780
BpuMI	CCSGG	1 cut(s)	458
BsaJI	CCNNGG	5 cut(s)	58, 238, 473, 731, 739
BsaWI	WCCGGW	2 cut(s)	413, 925
BsaXI	ACNNNNNCTCC	2 cut(s)	528, 558
Bsc4I	CCNNNNNNNGG	1 cut(s)	479
Bse1I	ACTGG	1 cut(s)	878
Bse3DI	GCAATG	1 cut(s)	603
BseAI	TCCGGA	2 cut(s)	413, 925
BseDI	CCNNGG	5 cut(s)	58, 238, 473, 731, 739
BseGI	GGATG	3 cut(s)	157, 547, 891
BseLI	CCNNNNNNNGG	1 cut(s)	479
BseMI	GCAATG	1 cut(s)	603
BseMII	CTCAG	1 cut(s)	794
BseNI	ACTGG	1 cut(s)	878
BsgI	GTGCAG	1 cut(s)	931
BshFI	GGCC	3 cut(s)	366, 483, 1037
BshNI	GGYRCC	2 cut(s)	469, 622
BsiHKAI	GWGCWC	3 cut(s)	213, 267, 493
BsiHKCI	CYCGRG	1 cut(s)	212
BsiSI	CCGG	3 cut(s)	414, 458, 926
BslFI	GGGAC	1 cut(s)	712
BslI	CCNNNNNNNGG	1 cut(s)	479
BsmFI	GGGAC	1 cut(s)	712
BsnI	GGCC	3 cut(s)	366, 483, 1037
BsoBI	CYCGRG	1 cut(s)	212
Bsp1286I	GDGCHC	3 cut(s)	213, 267, 493
Bsp13I	TCCGGA	2 cut(s)	413, 925
Bsp143I	GATC	4 cut(s)	113, 286, 571, 754
Bsp19I	CCATGG	2 cut(s)	238, 473
BspACI	CCGC	4 cut(s)	304, 620, 687, 959
BspANI	GGCC	3 cut(s)	366, 483, 1037
BspCNI	CTCAG	1 cut(s)	793
BspEI	TCCGGA	2 cut(s)	413, 925
BspHI	TCATGA	2 cut(s)	309, 868
BspLI	GGNNCC	4 cut(s)	367, 471, 624, 737
BspMAI	CTGCAG	1 cut(s)	631
BspPI	GGATC	1 cut(s)	281
BspQI	GCTCTTC	1 cut(s)	129
BspT107I	GGYRCC	2 cut(s)	469, 622
BspTI	CTTAAG	1 cut(s)	902
BsrDI	GCAATG	1 cut(s)	603
BsrI	ACTGG	1 cut(s)	878
BssECI	CCNNGG	5 cut(s)	58, 238, 473, 731, 739
BssMI	GATC	4 cut(s)	113, 286, 571, 754
BssT1I	CCWWGG	5 cut(s)	58, 238, 473, 731, 739
Bst6I	CTCTTC	3 cut(s)	32, 114, 129
BstAFI	CTTAAG	1 cut(s)	902
BstC8I	GCNNGC	5 cut(s)	141, 468, 581, 627, 1099
BstDEI	CTNAG	5 cut(s)	51, 259, 278, 485, 780
BstDSI	CCRYGG	2 cut(s)	238, 473
BstF5I	GGATG	3 cut(s)	157, 547, 891
BstHHI	GCGC	2 cut(s)	203, 711
BstKTI	GATC	4 cut(s)	116, 289, 574, 757
BstMBI	GATC	4 cut(s)	113, 286, 571, 754
BstMWI	GCNNNNNNNGC	5 cut(s)	243, 524, 608, 617, 626
BstNSI	RCATGY	4 cut(s)	143, 430, 729, 820
BstSCI	CCNGG	1 cut(s)	456
BstSFI	CTRYAG	1 cut(s)	627
BsuI	GTATCC	1 cut(s)	908
BsuRI	GGCC	3 cut(s)	366, 483, 1037
BtgI	CCRYGG	2 cut(s)	238, 473
BtgZI	GCGATG	1 cut(s)	894
BtsCI	GGATG	3 cut(s)	157, 547, 891
BtsI	GCAGTG	2 cut(s)	195, 636
BtsIMutI	CAGTG	2 cut(s)	195, 636
Cac8I	GCNNGC	5 cut(s)	141, 468, 581, 627, 1099
CciI	TCATGA	2 cut(s)	309, 868
CfoI	GCGC	2 cut(s)	203, 711
Cfr13I	GGNCC	4 cut(s)	365, 736, 1036, 1062
Csp6I	GTAC	2 cut(s)	317, 530
CviQI	GTAC	2 cut(s)	317, 530
DdeI	CTNAG	5 cut(s)	51, 259, 278, 485, 780
DpnI	GATC	4 cut(s)	115, 288, 573, 756
DpnII	GATC	4 cut(s)	113, 286, 571, 754
Eam1104I	CTCTTC	3 cut(s)	32, 114, 129
EarI	CTCTTC	3 cut(s)	32, 114, 129
Ecl136II	GAGCTC	2 cut(s)	211, 265
Eco130I	CCWWGG	5 cut(s)	58, 238, 473, 731, 739
Eco24I	GRGCYC	2 cut(s)	213, 267
Eco47I	GGWCC	2 cut(s)	736, 1062
Eco53kI	GAGCTC	2 cut(s)	211, 265
Eco57I	CTGAAG	1 cut(s)	1087
Eco88I	CYCGRG	1 cut(s)	212
EcoICRI	GAGCTC	2 cut(s)	211, 265
EcoO109I	RGGNCCY	2 cut(s)	365, 1062
EcoRI	GAATTC	1 cut(s)	495
EcoT14I	CCWWGG	5 cut(s)	58, 238, 473, 731, 739
EcoT38I	GRGCYC	2 cut(s)	213, 267
ErhI	CCWWGG	5 cut(s)	58, 238, 473, 731, 739
FaqI	GGGAC	1 cut(s)	712
FauI	CCCGC	1 cut(s)	680
FbaI	TGATCA	1 cut(s)	571
FokI	GGATG	3 cut(s)	164, 554, 878
FriOI	GRGCYC	2 cut(s)	213, 267
FspBI	CTAG	3 cut(s)	59, 446, 1019
GlaI	GCGC	2 cut(s)	202, 710
HaeIII	GGCC	3 cut(s)	366, 483, 1037
HapII	CCGG	3 cut(s)	414, 458, 926
HhaI	GCGC	2 cut(s)	203, 711
Hin6I	GCGC	2 cut(s)	201, 709
HinP1I	GCGC	2 cut(s)	201, 709
HindIII	AAGCTT	1 cut(s)	581
HinfI	GANTC	1 cut(s)	17
HpaII	CCGG	3 cut(s)	414, 458, 926
HphI	GGTGA	5 cut(s)	205, 704, 824, 955, 1039
Hpy166II	GTNNAC	1 cut(s)	325
Hpy188I	TCNGA	1 cut(s)	118
Hpy188III	TCNNGA	8 cut(s)	157, 214, 310, 414, 569, 782, 869, 926
Hpy8I	GTNNAC	1 cut(s)	325
HpyAV	CCTTC	3 cut(s)	300, 934, 1063
HpyCH4V	TGCA	6 cut(s)	34, 380, 611, 629, 891, 912
HpyF10VI	GCNNNNNNNGC	5 cut(s)	243, 524, 608, 617, 626
HpyF3I	CTNAG	5 cut(s)	51, 259, 278, 485, 780
HspAI	GCGC	2 cut(s)	201, 709
Kpn2I	TCCGGA	2 cut(s)	413, 925
Ksp22I	TGATCA	1 cut(s)	571
Kzo9I	GATC	4 cut(s)	113, 286, 571, 754
LguI	GCTCTTC	1 cut(s)	129
LmnI	GCTCC	1 cut(s)	549
LweI	GCATC	6 cut(s)	315, 598, 753, 832, 900, 1005
MaeI	CTAG	3 cut(s)	59, 446, 1019
MaeIII	GTNAC	2 cut(s)	788, 812
MalI	GATC	4 cut(s)	115, 288, 573, 756
MboI	GATC	4 cut(s)	113, 286, 571, 754
MboII	GAAGA	9 cut(s)	19, 101, 131, 137, 140, 143, 146, 749, 857
MfeI	CAATTG	2 cut(s)	228, 672
MhlI	GDGCHC	3 cut(s)	213, 267, 493
MluCI	AATT	7 cut(s)	36, 228, 359, 438, 495, 672, 849
MlyI	GAGTC	1 cut(s)	11
MmeI	TCCRAC	1 cut(s)	787
MnlI	CCTC	9 cut(s)	115, 306, 338, 532, 643, 715, 771, 803, 979
MroI	TCCGGA	2 cut(s)	413, 925
MroXI	GAANNNNTTC	1 cut(s)	921
MseI	TTAA	6 cut(s)	5, 110, 437, 798, 903, 1162
MslI	CAYNNNNRTG	1 cut(s)	1028
MspCI	CTTAAG	1 cut(s)	902
MspI	CCGG	3 cut(s)	414, 458, 926
MspR9I	CCNGG	1 cut(s)	458
MunI	CAATTG	2 cut(s)	228, 672
MwoI	GCNNNNNNNGC	5 cut(s)	243, 524, 608, 617, 626
NciI	CCSGG	1 cut(s)	458
NcoI	CCATGG	2 cut(s)	238, 473
NdeII	GATC	4 cut(s)	113, 286, 571, 754
NlaIV	GGNNCC	4 cut(s)	367, 471, 624, 737
NmuCI	GTSAC	2 cut(s)	788, 812
NspI	RCATGY	4 cut(s)	143, 430, 729, 820
PaeI	GCATGC	1 cut(s)	143
PagI	TCATGA	2 cut(s)	309, 868
PciI	ACATGT	1 cut(s)	816
PciSI	GCTCTTC	1 cut(s)	129
PdmI	GAANNNNTTC	1 cut(s)	921
PflMI	CCANNNNNTGG	1 cut(s)	479
PleI	GAGTC	1 cut(s)	11
PpsI	GAGTC	1 cut(s)	11
PpuMI	RGGWCCY	1 cut(s)	1062
PscI	ACATGT	1 cut(s)	816
Psp124BI	GAGCTC	2 cut(s)	213, 267
Psp5II	RGGWCCY	1 cut(s)	1062
PspN4I	GGNNCC	4 cut(s)	367, 471, 624, 737
PspPI	GGNCC	4 cut(s)	365, 736, 1036, 1062
PspPPI	RGGWCCY	1 cut(s)	1062
PstI	CTGCAG	1 cut(s)	631
RsaI	GTAC	2 cut(s)	318, 531
RsaNI	GTAC	2 cut(s)	317, 530
RseI	CAYNNNNRTG	1 cut(s)	1028
SacI	GAGCTC	2 cut(s)	213, 267
SapI	GCTCTTC	1 cut(s)	129
SaqAI	TTAA	6 cut(s)	5, 110, 437, 798, 903, 1162
Sau3AI	GATC	4 cut(s)	113, 286, 571, 754
Sau96I	GGNCC	4 cut(s)	365, 736, 1036, 1062
SchI	GAGTC	1 cut(s)	11
ScrFI	CCNGG	1 cut(s)	458
SduI	GDGCHC	3 cut(s)	213, 267, 493
SfaNI	GCATC	6 cut(s)	315, 598, 753, 832, 900, 1005
SfcI	CTRYAG	1 cut(s)	627
SinI	GGWCC	2 cut(s)	736, 1062
SmiMI	CAYNNNNRTG	1 cut(s)	1028
SmlI	CTYRAG	1 cut(s)	902
SmoI	CTYRAG	1 cut(s)	902
SphI	GCATGC	1 cut(s)	143
Sse9I	AATT	7 cut(s)	36, 228, 359, 438, 495, 672, 849
SsiI	CCGC	4 cut(s)	304, 620, 687, 959
SspI	AATATT	1 cut(s)	336
SspMI	CTAG	3 cut(s)	59, 446, 1019
SstI	GAGCTC	2 cut(s)	213, 267
StyD4I	CCNGG	1 cut(s)	456
StyI	CCWWGG	5 cut(s)	58, 238, 473, 731, 739
TaqI	TCGA	2 cut(s)	15, 493
TasI	AATT	7 cut(s)	36, 228, 359, 438, 495, 672, 849
TatI	WGTACW	1 cut(s)	529
Tru1I	TTAA	6 cut(s)	5, 110, 437, 798, 903, 1162
Tru9I	TTAA	6 cut(s)	5, 110, 437, 798, 903, 1162
TscAI	CASTG	2 cut(s)	195, 636
TseFI	GTSAC	2 cut(s)	788, 812
Tsp45I	GTSAC	2 cut(s)	788, 812
TspDTI	ATGAA	4 cut(s)	857, 869, 984, 1118
TspGWI	ACGGA	2 cut(s)	884, 1132
TspRI	CASTG	2 cut(s)	195, 636
Van91I	CCANNNNNTGG	1 cut(s)	479
Vha464I	CTTAAG	1 cut(s)	902
VpaK11BI	GGWCC	2 cut(s)	736, 1062
XapI	RAATTY	1 cut(s)	495
XceI	RCATGY	4 cut(s)	143, 430, 729, 820
XmaJI	CCTAGG	1 cut(s)	58
XmnI	GAANNNNTTC	1 cut(s)	921
XspI	CTAG	3 cut(s)	59, 446, 1019

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.