Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0002826

Physical Location & Seq

Genomic Coordinates Reverse (-)

15829019 .. 15830273

Gene Structure 1255 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g12360.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

ATGGAAGAGAAACAAAGAGAGTTGACATGGGAAGAGGAAGAGGAAGGGGCCACGGCGGAGATGTGGAAATATGTGTTCGGGTTTACTGAAATCGCGGTGGTAAGGTGTGCCATTGACCTCGGAATAGCTGAAGCAATTGAAAACCATGGAAGCCCCATGACACTCTTAGAGCTCTCAACTGCTCTAAGTTGTGATCCTTCTCACCTTTACCGAATCATGAGGGTACTAGTCCACCGCAAAATATTCAAAGAAAAACCCACCCAATCAGGCTCCAATGGTTATGCACAAACACCTTTGTCTCGCCGGCTACTAAAATCGGCAGAAAATAGCATGGTGGATTTGCTCTTGATGGGGAGTAATCCGGTAATGATGGCACCATATCTACGCCTGAGTACCCAAGTTCAAAGAAACACTAGCGATGCAGTGTTTGATGAAGTACATGGCAGTGACCTATGGAACTACGGTGCGGAAAACCCTGATCACGGCAAGGCTTTCAATGATTCAATGGCCTGTGATGCAAGGTTAGCTGTGCCTGCAGCGCTTGAAAGTTGTCCAGAGGCCTTCAAAGGGATTGAGACAATAGTAGATGCTGGTGGGGGTAATGGGACCACGACGCGCTTGTTGGTTAAGGCCTGTCCTTGGATTACTAAAGGCATTATCTTTGATCTTCCTCATGTTGTGTCTACTATTCCAGAGTGCGATCGCATTGAGAAAGTTGGAGGTGACTTTTTCAAATGTATTCCAAAGGCTGATGCTGTAGTTATGATGTGGATTCTTCATGACTGGACTGACGAGGAGTGCATCCGTATCCTTAAGAACTGCCGTGAAGCTATTCCTAATGACAAAGGGAAGGTGATAATCATAGATGCTGTAGTTGAAGACAATGAGAAAGATTACAACAAGCTAACACGAGTGAAATTGATGCTAGACATTGCGATGATGAACGGTACCAAAGGCAAAGAAAGGACTGCCAAGGAATGGGAGTATGTTATCCGGGAGGCTGGTTTTAGTCGGCACACTATAACACCTACTCGCACTGTCCAATCCGTTATTCAAGTATTTCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0008757 GO:0009058 GO:0009987 GO:0010817 GO:0016740 GO:0016741 GO:0017096 GO:0017144 GO:0018130 GO:0019438 GO:0030186 GO:0030187 GO:0032259 GO:0034641 GO:0034754 GO:0042430 GO:0042435 GO:0042445 GO:0042446 GO:0043603 GO:0043604 GO:0044237 GO:0044249 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0065007 GO:0065008 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dimerisation Methyltransf_2

Protein Analysis

356

Amino Acids

39.8

Weight (kDa)

5.35

Isoelectric Point (pI)

34.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002826)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35150 AT4G35160
fragaria_vesca	FvH4_2g15840 FvH4_2g15880 FvH4_2g15880
malus_domestica	MD05G1127400.v1.1 MD05G1127600.v1.1 MD05G1127900.v1.1 MD05G1128000.v1.1 MD05G1128100.v1.1
prunus_persica	Prupe.8G171000_v2.0.a1 Prupe.8G171100_v2.0.a1 Prupe.8G171400_v2.0.a1 Prupe.8G171900_v2.0.a1 Prupe.8G172000_v2.0.a1
pyrus_communis	pycom05g12360 pycom05g12370 pycom05g12400
rosa_chinensis	RchiOBHm_Chr6g0279261 RchiOBHm_Chr6g0279331 RchiOBHm_Chr6g0279441
rosa_laevigata	RLG00000013151 RLG00000013152
rosa_multiflora	Rmu_sc0009584.1_g000002 Rmu_sc0026652.1_g000001
rosa_roxburghii	Rroxscaffold_7G00188960 Rroxscaffold_7G00188980 Rroxscaffold_7G00189010
rosa_rugosa	Rorug06G0124200 Rorug06G0124200
rosa_samantha	Rh6AG232600 Rh6AG232800 Rh6AG233200 Rh6BG237200 Rh6BG237500 Rh6CG239300 Rh6CG239700
rosa_wichuraiana	Rw6G020330 Rw6G020360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	947
AccB1I	GGYRCC	2 cut(s)	373, 947
AccB7I	CCANNNNNTGG	1 cut(s)	978
AccI	GTMKAC	1 cut(s)	683
AccII	CGCG	2 cut(s)	95, 616
AciI	CCGC	4 cut(s)	56, 95, 235, 467
AclWI	GGATC	1 cut(s)	188
AcuI	CTGAAG	1 cut(s)	150
AfaI	GTAC	4 cut(s)	225, 394, 438, 949
AfeI	AGCGCT	1 cut(s)	540
AfiI	CCNNNNNNNGG	4 cut(s)	482, 567, 639, 978
AflII	CTTAAG	1 cut(s)	812
AhlI	ACTAGT	1 cut(s)	226
AjuI	GAANNNNNNNTTGG	2 cut(s)	1035, 1067
AluBI	AGCT	5 cut(s)	128, 172, 527, 830, 904
AluI	AGCT	5 cut(s)	128, 172, 527, 830, 904
Alw21I	GWGCWC	1 cut(s)	174
Alw26I	GTCTC	2 cut(s)	303, 569
AlwI	GGATC	1 cut(s)	188
Aor51HI	AGCGCT	1 cut(s)	540
AoxI	GGCC	4 cut(s)	48, 507, 558, 630
ApeKI	GCWGC	1 cut(s)	536
AsiSI	GCGATCGC	1 cut(s)	703
Asp700I	GAANNNNTTC	1 cut(s)	831
Asp718I	GGTACC	1 cut(s)	947
AspLEI	GCGC	2 cut(s)	541, 618
AspS9I	GGNCC	2 cut(s)	48, 606
AsuC2I	CCSGG	1 cut(s)	995
AsuHPI	GGTGA	3 cut(s)	194, 734, 865
AvaII	GGWCC	1 cut(s)	606
BanI	GGYRCC	2 cut(s)	373, 947
BanII	GRGCYC	1 cut(s)	174
BauI	CACGAG	1 cut(s)	909
BbsI	GAAGAC	1 cut(s)	885
Bbv12I	GWGCWC	1 cut(s)	174
BbvI	GCAGC	1 cut(s)	548
BccI	CCATC	2 cut(s)	343, 364
BceAI	ACGGC	3 cut(s)	69, 499, 807
BciVI	GTATCC	1 cut(s)	818
BclI	TGATCA	1 cut(s)	478
BcnI	CCSGG	1 cut(s)	995
BcoDI	GTCTC	2 cut(s)	303, 569
BcuI	ACTAGT	1 cut(s)	226
BfaI	CTAG	3 cut(s)	227, 414, 926
BfmI	CTRYAG	3 cut(s)	534, 756, 870
BfoI	RGCGCY	1 cut(s)	542
BfrI	CTTAAG	1 cut(s)	812
BfuI	GTATCC	1 cut(s)	818
BisI	GCNGC	1 cut(s)	537
BlsI	GCNGC	1 cut(s)	538
Bme1390I	CCNGG	1 cut(s)	995
Bme18I	GGWCC	1 cut(s)	606
BmgT120I	GGNCC	2 cut(s)	48, 606
BmiI	GGNNCC	5 cut(s)	49, 271, 375, 607, 949
BmrFI	CCNGG	1 cut(s)	995
BmsI	GCATC	7 cut(s)	409, 505, 577, 742, 810, 856, 912
BpiI	GAAGAC	1 cut(s)	885
BpuMI	CCSGG	1 cut(s)	995
BsaJI	CCNNGG	5 cut(s)	51, 118, 145, 638, 972
BsaWI	WCCGGW	1 cut(s)	361
Bsc4I	CCNNNNNNNGG	4 cut(s)	482, 567, 639, 978
Bse118I	RCCGGY	1 cut(s)	303
Bse1I	ACTGG	1 cut(s)	788
Bse3DI	GCAATG	1 cut(s)	930
BseDI	CCNNGG	5 cut(s)	51, 118, 145, 638, 972
BseGI	GGATG	1 cut(s)	801
BseLI	CCNNNNNNNGG	4 cut(s)	482, 567, 639, 978
BseMI	GCAATG	1 cut(s)	930
BseMII	CTCAG	1 cut(s)	380
BseNI	ACTGG	1 cut(s)	788
BseRI	GAGGAG	1 cut(s)	809
BseXI	GCAGC	1 cut(s)	548
Bsh1236I	CGCG	2 cut(s)	95, 616
Bsh1285I	CGRYCG	1 cut(s)	703
BshFI	GGCC	4 cut(s)	50, 509, 560, 632
BshNI	GGYRCC	2 cut(s)	373, 947
BsiEI	CGRYCG	1 cut(s)	703
BsiHKAI	GWGCWC	1 cut(s)	174
BsiSI	CCGG	3 cut(s)	304, 362, 994
BslFI	GGGAC	1 cut(s)	619
BslI	CCNNNNNNNGG	4 cut(s)	482, 567, 639, 978
BsmAI	GTCTC	2 cut(s)	303, 569
BsmFI	GGGAC	1 cut(s)	619
BsnI	GGCC	4 cut(s)	50, 509, 560, 632
Bsp1286I	GDGCHC	1 cut(s)	174
Bsp143I	GATC	4 cut(s)	193, 478, 664, 700
Bsp19I	CCATGG	1 cut(s)	145
BspACI	CCGC	4 cut(s)	56, 95, 235, 467
BspANI	GGCC	4 cut(s)	50, 509, 560, 632
BspCNI	CTCAG	1 cut(s)	381
BspFNI	CGCG	2 cut(s)	95, 616
BspHI	TCATGA	2 cut(s)	216, 778
BspLI	GGNNCC	5 cut(s)	49, 271, 375, 607, 949
BspMAI	CTGCAG	1 cut(s)	538
BspPI	GGATC	1 cut(s)	188
BspT107I	GGYRCC	2 cut(s)	373, 947
BspTI	CTTAAG	1 cut(s)	812
BsrDI	GCAATG	1 cut(s)	930
BsrFI	RCCGGY	1 cut(s)	303
BsrI	ACTGG	1 cut(s)	788
BssAI	RCCGGY	1 cut(s)	303
BssECI	CCNNGG	5 cut(s)	51, 118, 145, 638, 972
BssMI	GATC	4 cut(s)	193, 478, 664, 700
BssSI	CACGAG	1 cut(s)	909
BssT1I	CCWWGG	3 cut(s)	145, 638, 972
Bst2BI	CACGAG	1 cut(s)	909
Bst4CI	ACNGT	3 cut(s)	464, 947, 1039
Bst6I	CTCTTC	2 cut(s)	27, 33
BstAFI	CTTAAG	1 cut(s)	812
BstC8I	GCNNGC	2 cut(s)	305, 534
BstDEI	CTNAG	3 cut(s)	166, 185, 389
BstDSI	CCRYGG	2 cut(s)	51, 145
BstF5I	GGATG	1 cut(s)	801
BstFNI	CGCG	2 cut(s)	95, 616
BstH2I	RGCGCY	1 cut(s)	542
BstHHI	GCGC	2 cut(s)	541, 618
BstKTI	GATC	4 cut(s)	196, 481, 667, 703
BstMAI	GTCTC	2 cut(s)	303, 569
BstMBI	GATC	4 cut(s)	193, 478, 664, 700
BstMCI	CGRYCG	1 cut(s)	703
BstMWI	GCNNNNNNNGC	4 cut(s)	515, 524, 533, 538
BstSCI	CCNGG	1 cut(s)	993
BstSFI	CTRYAG	3 cut(s)	534, 756, 870
BstUI	CGCG	2 cut(s)	95, 616
BstV1I	GCAGC	1 cut(s)	548
BstV2I	GAAGAC	1 cut(s)	885
BsuI	GTATCC	1 cut(s)	818
BsuRI	GGCC	4 cut(s)	50, 509, 560, 632
BtgI	CCRYGG	2 cut(s)	51, 145
BtgZI	GCGATG	2 cut(s)	432, 950
BtsCI	GGATG	1 cut(s)	801
BtsI	GCAGTG	2 cut(s)	429, 451
BtsIMutI	CAGTG	3 cut(s)	429, 451, 1035
Cac8I	GCNNGC	2 cut(s)	305, 534
CciI	TCATGA	2 cut(s)	216, 778
CfoI	GCGC	2 cut(s)	541, 618
Cfr10I	RCCGGY	1 cut(s)	303
Cfr13I	GGNCC	2 cut(s)	48, 606
CseI	GACGC	1 cut(s)	622
Csp6I	GTAC	4 cut(s)	224, 393, 437, 948
CviAII	CATG	8 cut(s)	27, 146, 157, 217, 331, 440, 674, 779
CviQI	GTAC	4 cut(s)	224, 393, 437, 948
DdeI	CTNAG	3 cut(s)	166, 185, 389
DpnI	GATC	4 cut(s)	195, 480, 666, 702
DpnII	GATC	4 cut(s)	193, 478, 664, 700
Eam1104I	CTCTTC	2 cut(s)	27, 33
EarI	CTCTTC	2 cut(s)	27, 33
EciI	GGCGGA	1 cut(s)	71
Ecl136II	GAGCTC	1 cut(s)	172
Eco130I	CCWWGG	3 cut(s)	145, 638, 972
Eco147I	AGGCCT	2 cut(s)	560, 632
Eco24I	GRGCYC	1 cut(s)	174
Eco47I	GGWCC	1 cut(s)	606
Eco47III	AGCGCT	1 cut(s)	540
Eco53kI	GAGCTC	1 cut(s)	172
Eco57I	CTGAAG	1 cut(s)	150
EcoICRI	GAGCTC	1 cut(s)	172
EcoT14I	CCWWGG	3 cut(s)	145, 638, 972
EcoT38I	GRGCYC	1 cut(s)	174
ErhI	CCWWGG	3 cut(s)	145, 638, 972
FaeI	CATG	8 cut(s)	30, 149, 160, 220, 334, 443, 677, 782
FaqI	GGGAC	1 cut(s)	619
FatI	CATG	8 cut(s)	26, 145, 156, 216, 330, 439, 673, 778
FbaI	TGATCA	1 cut(s)	478
FblI	GTMKAC	1 cut(s)	683
Fnu4HI	GCNGC	1 cut(s)	537
FokI	GGATG	1 cut(s)	788
FriOI	GRGCYC	1 cut(s)	174
Fsp4HI	GCNGC	1 cut(s)	537
FspBI	CTAG	3 cut(s)	227, 414, 926
GlaI	GCGC	2 cut(s)	540, 617
GluI	GCNGC	1 cut(s)	537
HaeII	RGCGCY	1 cut(s)	542
HaeIII	GGCC	4 cut(s)	50, 509, 560, 632
HapII	CCGG	3 cut(s)	304, 362, 994
HgaI	GACGC	1 cut(s)	622
HhaI	GCGC	2 cut(s)	541, 618
Hin1II	CATG	8 cut(s)	30, 149, 160, 220, 334, 443, 677, 782
Hin6I	GCGC	2 cut(s)	539, 616
HinP1I	GCGC	2 cut(s)	539, 616
HincII	GTYRAC	1 cut(s)	24
HindII	GTYRAC	1 cut(s)	24
HinfI	GANTC	3 cut(s)	213, 500, 772
HpaII	CCGG	3 cut(s)	304, 362, 994
HphI	GGTGA	3 cut(s)	194, 734, 865
Hpy166II	GTNNAC	4 cut(s)	24, 84, 232, 684
Hpy188I	TCNGA	1 cut(s)	122
Hpy188III	TCNNGA	5 cut(s)	217, 346, 554, 692, 779
Hpy8I	GTNNAC	4 cut(s)	24, 84, 232, 684
Hpy99I	CGWCG	1 cut(s)	616
HpyAV	CCTTC	4 cut(s)	38, 207, 571, 844
HpyCH4III	ACNGT	3 cut(s)	464, 947, 1039
HpyCH4V	TGCA	5 cut(s)	284, 422, 518, 536, 801
HpyF10VI	GCNNNNNNNGC	4 cut(s)	515, 524, 533, 538
HpyF3I	CTNAG	3 cut(s)	166, 185, 389
Hsp92II	CATG	8 cut(s)	30, 149, 160, 220, 334, 443, 677, 782
HspAI	GCGC	2 cut(s)	539, 616
KpnI	GGTACC	1 cut(s)	951
KroI	GCCGGC	1 cut(s)	303
KroNI	GCCGGC	1 cut(s)	305
Ksp22I	TGATCA	1 cut(s)	478
Kzo9I	GATC	4 cut(s)	193, 478, 664, 700
LmnI	GCTCC	1 cut(s)	275
Lsp1109I	GCAGC	1 cut(s)	548
LweI	GCATC	7 cut(s)	409, 505, 577, 742, 810, 856, 912
MaeI	CTAG	3 cut(s)	227, 414, 926
MaeIII	GTNAC	2 cut(s)	446, 722
MalI	GATC	4 cut(s)	195, 480, 666, 702
MboI	GATC	4 cut(s)	193, 478, 664, 700
MboII	GAAGA	6 cut(s)	17, 44, 50, 659, 767, 890
MfeI	CAATTG	1 cut(s)	135
MhlI	GDGCHC	1 cut(s)	174
MluCI	AATT	2 cut(s)	135, 917
MmeI	TCCRAC	1 cut(s)	697
MnlI	CCTC	9 cut(s)	28, 34, 128, 213, 550, 681, 713, 787, 991
MroNI	GCCGGC	1 cut(s)	303
MroXI	GAANNNNTTC	1 cut(s)	831
MseI	TTAA	3 cut(s)	627, 813, 1066
MslI	CAYNNNNRTG	2 cut(s)	444, 935
MspCI	CTTAAG	1 cut(s)	812
MspI	CCGG	3 cut(s)	304, 362, 994
MspR9I	CCNGG	1 cut(s)	995
MunI	CAATTG	1 cut(s)	135
MvnI	CGCG	2 cut(s)	95, 616
MwoI	GCNNNNNNNGC	4 cut(s)	515, 524, 533, 538
NaeI	GCCGGC	1 cut(s)	305
NciI	CCSGG	1 cut(s)	995
NcoI	CCATGG	1 cut(s)	145
NdeII	GATC	4 cut(s)	193, 478, 664, 700
NgoMIV	GCCGGC	1 cut(s)	303
NlaIII	CATG	8 cut(s)	30, 149, 160, 220, 334, 443, 677, 782
NlaIV	GGNNCC	5 cut(s)	49, 271, 375, 607, 949
NmuCI	GTSAC	2 cut(s)	446, 722
PagI	TCATGA	2 cut(s)	216, 778
PceI	AGGCCT	2 cut(s)	560, 632
PdiI	GCCGGC	1 cut(s)	305
PdmI	GAANNNNTTC	1 cut(s)	831
PfeI	GAWTC	3 cut(s)	213, 500, 772
PflMI	CCANNNNNTGG	1 cut(s)	978
PfoI	TCCNGGA	1 cut(s)	993
PkrI	GCNGC	1 cut(s)	538
Ple19I	CGATCG	1 cut(s)	703
Psp124BI	GAGCTC	1 cut(s)	174
PspN4I	GGNNCC	5 cut(s)	49, 271, 375, 607, 949
PspPI	GGNCC	2 cut(s)	48, 606
PstI	CTGCAG	1 cut(s)	538
PvuI	CGATCG	1 cut(s)	703
RgaI	GCGATCGC	1 cut(s)	703
RsaI	GTAC	4 cut(s)	225, 394, 438, 949
RsaNI	GTAC	4 cut(s)	224, 393, 437, 948
RseI	CAYNNNNRTG	2 cut(s)	444, 935
SacI	GAGCTC	1 cut(s)	174
SaqAI	TTAA	3 cut(s)	627, 813, 1066
SatI	GCNGC	1 cut(s)	537
Sau3AI	GATC	4 cut(s)	193, 478, 664, 700
Sau96I	GGNCC	2 cut(s)	48, 606
ScrFI	CCNGG	1 cut(s)	995
SduI	GDGCHC	1 cut(s)	174
SfaAI	GCGATCGC	1 cut(s)	703
SfaNI	GCATC	7 cut(s)	409, 505, 577, 742, 810, 856, 912
SfcI	CTRYAG	3 cut(s)	534, 756, 870
SgfI	GCGATCGC	1 cut(s)	703
SinI	GGWCC	1 cut(s)	606
SmiMI	CAYNNNNRTG	2 cut(s)	444, 935
SmlI	CTYRAG	1 cut(s)	812
SmoI	CTYRAG	1 cut(s)	812
SpeI	ACTAGT	1 cut(s)	226
Sse9I	AATT	2 cut(s)	135, 917
SseBI	AGGCCT	2 cut(s)	560, 632
SsiI	CCGC	4 cut(s)	56, 95, 235, 467
SspI	AATATT	1 cut(s)	243
SspMI	CTAG	3 cut(s)	227, 414, 926
SstI	GAGCTC	1 cut(s)	174
StuI	AGGCCT	2 cut(s)	560, 632
StyD4I	CCNGG	1 cut(s)	993
StyI	CCWWGG	3 cut(s)	145, 638, 972
TaaI	ACNGT	3 cut(s)	464, 947, 1039
TasI	AATT	2 cut(s)	135, 917
TatI	WGTACW	1 cut(s)	436
TfiI	GAWTC	3 cut(s)	213, 500, 772
Tru1I	TTAA	3 cut(s)	627, 813, 1066
Tru9I	TTAA	3 cut(s)	627, 813, 1066
TscAI	CASTG	3 cut(s)	429, 451, 1042
TseFI	GTSAC	2 cut(s)	446, 722
TseI	GCWGC	1 cut(s)	536
Tsp45I	GTSAC	2 cut(s)	446, 722
TspDTI	ATGAA	3 cut(s)	447, 767, 956
TspGWI	ACGGA	2 cut(s)	794, 1036
TspRI	CASTG	3 cut(s)	429, 451, 1042
Van91I	CCANNNNNTGG	1 cut(s)	978
Vha464I	CTTAAG	1 cut(s)	812
VpaK11BI	GGWCC	1 cut(s)	606
XmiI	GTMKAC	1 cut(s)	683
XmnI	GAANNNNTTC	1 cut(s)	831
XspI	CTAG	3 cut(s)	227, 414, 926

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.