Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002826

Physical Location & Seq

Genomic Coordinates Reverse (-)

42492401 .. 42493688

Gene Structure 1288 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ25050

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGGAAGATACACAAAGAGAGCCTATTTTGGAAGAGAAAGGAGAGGAACGTGCCAAAGTGGAAGTGTGGAATTATGTGCTTGGGTTTTCAAAAATTGCAGTGGTAAAATGTGCCATTGAGCTTGGAATAGCTGATGCTATTGAAAGCCATGGAAGCCCCATGACACTCTTAGAGCTATCGACAACTCTTAAGTGCGATCCTTCTTCCCTTTACCGCATCATGAGGTTCCTAGTTCACCAGAAAATATTCAAAGAAGTCCAACCCAAAATCCCATCAGGCCCCAAAATTTATGCTCAATCACCTTTGTCCCGCTGCCTGCTAAAATCCGGTGAACCTAGCATGGCTGCATTGATTTTGCTGGAGAGTAGTCCGGTAATGCTAGCATCATGGCATGGCCTTAGTGCCCGTATTCTAGGCAATGGCACCAGTACTCCCGCATTTAAGGCAGTACATGGTGAGGATTTATGGAGCTTTGCAGCGGCTAATCCCGGTCACAGCAAGCTTATCAATGAAGCAATGGCTTGTGATGCAAGCTTGGCACTGCCTGCACTGATTGAGAGTTGTTTAGAGGTTTTCAATGGGATTGAGACCATAGTAGATGTGGGTGGTGGTAATGGAACTACTTTAGGCATGTTGGTTAAGGCCTGTCCTTGGATTACTCGAGGGATCAATTTTGATCTTCCTCATGTTGTATCTGTTGCTGAGGAGAGTGATCGAGTGGAGAATGTTGGAGGAGACATGTTTGATCGTATTCCAAAGGCCGATGCTGCAATTATCAAATGGGTTCTTCATGATTGGGGAGATGAGGAGTGTATCCGTATACTGAAGAAATGTAAGGAAGCAATTCCTGAGGACAAAGGGAAGGTGATAATTCTGGAAGCTGTTATTGAAGAAGATGAGATCAAAGACGAGCTAACCAATGTGAGATTGATGCTAGACATGGTGATGATGGCTCATACTAGCACTGGCAAAGAGAGGACCTTCACTACTAGCAAAACAACAATTACCCACGGATTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0008757 GO:0009058 GO:0009987 GO:0010817 GO:0016740 GO:0016741 GO:0017096 GO:0017144 GO:0018130 GO:0019438 GO:0030186 GO:0030187 GO:0032259 GO:0034641 GO:0034754 GO:0042430 GO:0042435 GO:0042445 GO:0042446 GO:0043603 GO:0043604 GO:0044237 GO:0044249 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0065007 GO:0065008 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dimerisation Methyltransf_2

Protein Analysis

339

Amino Acids

37.16

Weight (kDa)

5.24

Isoelectric Point (pI)

39.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dimerisation	PF08100	23 - 109	2e-19	O-methyltransferase dimerisation domain
Methyltransf_2	PF00891	130 - 329	2.1e-44	O-methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002826)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35150 AT4G35160
fragaria_vesca	FvH4_2g15840 FvH4_2g15880 FvH4_2g15880
malus_domestica	MD05G1127400.v1.1 MD05G1127600.v1.1 MD05G1127900.v1.1 MD05G1128000.v1.1 MD05G1128100.v1.1
prunus_persica	Prupe.8G171000_v2.0.a1 Prupe.8G171100_v2.0.a1 Prupe.8G171400_v2.0.a1 Prupe.8G171900_v2.0.a1 Prupe.8G172000_v2.0.a1
pyrus_communis	pycom05g12360 pycom05g12370 pycom05g12400
rosa_chinensis	RchiOBHm_Chr6g0279261 RchiOBHm_Chr6g0279331 RchiOBHm_Chr6g0279441
rosa_laevigata	RLG00000013151 RLG00000013152
rosa_multiflora	Rmu_sc0009584.1_g000002 Rmu_sc0026652.1_g000001
rosa_roxburghii	Rroxscaffold_7G00188960 Rroxscaffold_7G00188980 Rroxscaffold_7G00189010
rosa_rugosa	Rorug06G0124200 Rorug06G0124200
rosa_samantha	Rh6AG232600 Rh6AG232800 Rh6AG233200 Rh6BG237200 Rh6BG237500 Rh6CG239300 Rh6CG239700
rosa_wichuraiana	Rw6G020330 Rw6G020360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	422
AccI	GTMKAC	1 cut(s)	820
AciI	CCGC	4 cut(s)	214, 310, 435, 479
AclWI	GGATC	2 cut(s)	191, 674
AcsI	RAATTY	1 cut(s)	285
AcuI	CTGAAG	1 cut(s)	845
AfaI	GTAC	2 cut(s)	430, 450
AfiI	CCNNNNNNNGG	1 cut(s)	651
AflII	CTTAAG	1 cut(s)	188
AflIII	ACRYGT	1 cut(s)	738
AgsI	TTSAA	5 cut(s)	90, 143, 250, 577, 890
AluBI	AGCT	8 cut(s)	121, 131, 175, 471, 502, 534, 881, 913
AluI	AGCT	8 cut(s)	121, 131, 175, 471, 502, 534, 881, 913
Alw26I	GTCTC	2 cut(s)	581, 729
AlwI	GGATC	2 cut(s)	191, 674
Ama87I	CYCGRG	1 cut(s)	660
AoxI	GGCC	4 cut(s)	277, 394, 642, 759
ApeKI	GCWGC	4 cut(s)	312, 344, 476, 767
ApoI	RAATTY	1 cut(s)	285
Asp700I	GAANNNNTTC	2 cut(s)	245, 843
AspS9I	GGNCC	2 cut(s)	278, 978
AsuC2I	CCSGG	1 cut(s)	489
AsuHPI	GGTGA	6 cut(s)	227, 291, 341, 467, 877, 955
AsuNHI	GCTAGC	1 cut(s)	379
AvaI	CYCGRG	1 cut(s)	660
AvaII	GGWCC	1 cut(s)	978
AxyI	CCTNAGG	1 cut(s)	849
BaeGI	GKGCMC	1 cut(s)	406
BanI	GGYRCC	1 cut(s)	422
BbvCI	CCTCAGC	1 cut(s)	702
BbvI	GCAGC	4 cut(s)	299, 331, 488, 754
BccI	CCATC	2 cut(s)	280, 943
BciVI	GTATCC	1 cut(s)	824
BcnI	CCSGG	1 cut(s)	489
BcoDI	GTCTC	2 cut(s)	581, 729
BfaI	CTAG	7 cut(s)	230, 336, 380, 413, 935, 960, 990
BfrI	CTTAAG	1 cut(s)	188
BfuI	GTATCC	1 cut(s)	824
BisI	GCNGC	5 cut(s)	313, 345, 477, 480, 768
BlsI	GCNGC	5 cut(s)	314, 346, 478, 481, 769
BmcAI	AGTACT	1 cut(s)	430
Bme1390I	CCNGG	1 cut(s)	489
Bme18I	GGWCC	1 cut(s)	978
BmeT110I	CYCGRG	1 cut(s)	660
BmgT120I	GGNCC	2 cut(s)	278, 978
BmiI	GGNNCC	3 cut(s)	227, 280, 424
BmrFI	CCNGG	1 cut(s)	489
BmsI	GCATC	6 cut(s)	124, 225, 392, 517, 754, 921
BmtI	GCTAGC	1 cut(s)	383
BpmI	CTGGAG	1 cut(s)	380
Bpu10I	CCTNAGC	1 cut(s)	702
BpuMI	CCSGG	1 cut(s)	489
BsaI	GGTCTC	1 cut(s)	581
BsaJI	CCNNGG	3 cut(s)	148, 650, 1009
BsaWI	WCCGGW	2 cut(s)	326, 370
BsaXI	ACNNNNNCTCC	2 cut(s)	415, 445
Bsc4I	CCNNNNNNNGG	1 cut(s)	651
Bse1I	ACTGG	2 cut(s)	426, 970
Bse21I	CCTNAGG	1 cut(s)	849
Bse3DI	GCAATG	2 cut(s)	424, 522
BseDI	CCNNGG	3 cut(s)	148, 650, 1009
BseLI	CCNNNNNNNGG	1 cut(s)	651
BseMI	GCAATG	2 cut(s)	424, 522
BseMII	CTCAG	2 cut(s)	693, 840
BseNI	ACTGG	2 cut(s)	426, 970
BseRI	GAGGAG	3 cut(s)	719, 747, 821
BseSI	GKGCMC	1 cut(s)	406
BseXI	GCAGC	4 cut(s)	299, 331, 488, 754
BsgI	GTGCAG	1 cut(s)	531
BshFI	GGCC	4 cut(s)	279, 396, 644, 761
BshNI	GGYRCC	1 cut(s)	422
BsiHKCI	CYCGRG	1 cut(s)	660
BsiSI	CCGG	3 cut(s)	327, 371, 489
BslFI	GGGAC	1 cut(s)	292
BslI	CCNNNNNNNGG	1 cut(s)	651
BsmAI	GTCTC	2 cut(s)	581, 729
BsmFI	GGGAC	1 cut(s)	292
BsnI	GGCC	4 cut(s)	279, 396, 644, 761
Bso31I	GGTCTC	1 cut(s)	581
BsoBI	CYCGRG	1 cut(s)	660
Bsp1286I	GDGCHC	1 cut(s)	406
Bsp143I	GATC	6 cut(s)	196, 666, 676, 712, 745, 900
Bsp19I	CCATGG	1 cut(s)	148
BspACI	CCGC	4 cut(s)	214, 310, 435, 479
BspANI	GGCC	4 cut(s)	279, 396, 644, 761
BspCNI	CTCAG	2 cut(s)	694, 841
BspHI	TCATGA	2 cut(s)	219, 790
BspLI	GGNNCC	3 cut(s)	227, 280, 424
BspOI	GCTAGC	1 cut(s)	383
BspPI	GGATC	2 cut(s)	191, 674
BspT107I	GGYRCC	1 cut(s)	422
BspTI	CTTAAG	1 cut(s)	188
BspTNI	GGTCTC	1 cut(s)	581
BsrDI	GCAATG	2 cut(s)	424, 522
BsrI	ACTGG	2 cut(s)	426, 970
BssECI	CCNNGG	3 cut(s)	148, 650, 1009
BssMI	GATC	6 cut(s)	196, 666, 676, 712, 745, 900
BssNAI	GTATAC	1 cut(s)	821
BssT1I	CCWWGG	2 cut(s)	148, 650
Bst1107I	GTATAC	1 cut(s)	821
Bst6I	CTCTTC	1 cut(s)	27
BstAFI	CTTAAG	1 cut(s)	188
BstAPI	GCANNNNNTGC	1 cut(s)	545
BstC8I	GCNNGC	5 cut(s)	317, 381, 500, 532, 546
BstDEI	CTNAG	4 cut(s)	169, 398, 702, 849
BstDSI	CCRYGG	2 cut(s)	148, 1009
BstKTI	GATC	6 cut(s)	199, 669, 679, 715, 748, 903
BstMAI	GTCTC	2 cut(s)	581, 729
BstMBI	GATC	6 cut(s)	196, 666, 676, 712, 745, 900
BstMWI	GCNNNNNNNGC	6 cut(s)	153, 443, 527, 536, 545, 767
BstNSI	RCATGY	2 cut(s)	634, 742
BstSCI	CCNGG	1 cut(s)	487
BstSLI	GKGCMC	1 cut(s)	406
BstV1I	GCAGC	4 cut(s)	299, 331, 488, 754
BstZ17I	GTATAC	1 cut(s)	821
Bsu36I	CCTNAGG	1 cut(s)	849
BsuI	GTATCC	1 cut(s)	824
BsuRI	GGCC	4 cut(s)	279, 396, 644, 761
BtgI	CCRYGG	2 cut(s)	148, 1009
BtsI	GCAGTG	2 cut(s)	105, 539
BtsIMutI	CAGTG	4 cut(s)	105, 539, 548, 963
Cac8I	GCNNGC	5 cut(s)	317, 381, 500, 532, 546
CciI	TCATGA	2 cut(s)	219, 790
Cfr13I	GGNCC	2 cut(s)	278, 978
Csp6I	GTAC	2 cut(s)	429, 449
CviQI	GTAC	2 cut(s)	429, 449
DdeI	CTNAG	4 cut(s)	169, 398, 702, 849
DpnI	GATC	6 cut(s)	198, 668, 678, 714, 747, 902
DpnII	GATC	6 cut(s)	196, 666, 676, 712, 745, 900
Eam1104I	CTCTTC	1 cut(s)	27
EarI	CTCTTC	1 cut(s)	27
Eco130I	CCWWGG	2 cut(s)	148, 650
Eco147I	AGGCCT	1 cut(s)	644
Eco31I	GGTCTC	1 cut(s)	581
Eco47I	GGWCC	1 cut(s)	978
Eco57I	CTGAAG	1 cut(s)	845
Eco81I	CCTNAGG	1 cut(s)	849
Eco88I	CYCGRG	1 cut(s)	660
EcoO109I	RGGNCCY	2 cut(s)	278, 978
EcoT14I	CCWWGG	2 cut(s)	148, 650
ErhI	CCWWGG	2 cut(s)	148, 650
FaqI	GGGAC	1 cut(s)	292
FauI	CCCGC	2 cut(s)	317, 442
FblI	GTMKAC	1 cut(s)	820
Fnu4HI	GCNGC	5 cut(s)	313, 345, 477, 480, 768
Fsp4HI	GCNGC	5 cut(s)	313, 345, 477, 480, 768
FspBI	CTAG	7 cut(s)	230, 336, 380, 413, 935, 960, 990
GluI	GCNGC	5 cut(s)	313, 345, 477, 480, 768
GsuI	CTGGAG	1 cut(s)	380
HaeIII	GGCC	4 cut(s)	279, 396, 644, 761
HapII	CCGG	3 cut(s)	327, 371, 489
HindIII	AAGCTT	2 cut(s)	500, 532
HpaII	CCGG	3 cut(s)	327, 371, 489
HphI	GGTGA	6 cut(s)	227, 291, 341, 467, 877, 955
Hpy166II	GTNNAC	3 cut(s)	235, 332, 821
Hpy188III	TCNNGA	4 cut(s)	220, 791, 848, 875
Hpy8I	GTNNAC	3 cut(s)	235, 332, 821
HpyAV	CCTTC	3 cut(s)	210, 856, 991
HpyCH4IV	ACGT	1 cut(s)	49
HpyCH4V	TGCA	6 cut(s)	98, 347, 476, 530, 548, 770
HpyF10VI	GCNNNNNNNGC	6 cut(s)	153, 443, 527, 536, 545, 767
HpyF3I	CTNAG	4 cut(s)	169, 398, 702, 849
HpySE526I	ACGT	1 cut(s)	49
Kzo9I	GATC	6 cut(s)	196, 666, 676, 712, 745, 900
LmnI	GCTCC	1 cut(s)	468
Lsp1109I	GCAGC	4 cut(s)	299, 331, 488, 754
LweI	GCATC	6 cut(s)	124, 225, 392, 517, 754, 921
MaeI	CTAG	7 cut(s)	230, 336, 380, 413, 935, 960, 990
MaeII	ACGT	1 cut(s)	49
MaeIII	GTNAC	1 cut(s)	491
MalI	GATC	6 cut(s)	198, 668, 678, 714, 747, 902
MboI	GATC	6 cut(s)	196, 666, 676, 712, 745, 900
MboII	GAAGA	8 cut(s)	17, 44, 195, 671, 779, 838, 902, 905
MhlI	GDGCHC	1 cut(s)	406
MluCI	AATT	8 cut(s)	70, 93, 285, 670, 771, 843, 870, 1002
MmeI	TCCRAC	2 cut(s)	283, 709
MroXI	GAANNNNTTC	2 cut(s)	245, 843
MseI	TTAA	4 cut(s)	189, 441, 639, 1018
MslI	CAYNNNNRTG	1 cut(s)	944
MspA1I	CMGCKG	2 cut(s)	312, 479
MspCI	CTTAAG	1 cut(s)	188
MspI	CCGG	3 cut(s)	327, 371, 489
MspR9I	CCNGG	1 cut(s)	489
MwoI	GCNNNNNNNGC	6 cut(s)	153, 443, 527, 536, 545, 767
NciI	CCSGG	1 cut(s)	489
NcoI	CCATGG	1 cut(s)	148
NdeII	GATC	6 cut(s)	196, 666, 676, 712, 745, 900
NheI	GCTAGC	1 cut(s)	379
NlaIV	GGNNCC	3 cut(s)	227, 280, 424
NmuCI	GTSAC	1 cut(s)	491
NspI	RCATGY	2 cut(s)	634, 742
PaeR7I	CTCGAG	1 cut(s)	660
PagI	TCATGA	2 cut(s)	219, 790
PceI	AGGCCT	1 cut(s)	644
PciI	ACATGT	1 cut(s)	738
PdmI	GAANNNNTTC	2 cut(s)	245, 843
PkrI	GCNGC	5 cut(s)	314, 346, 478, 481, 769
PpuMI	RGGWCCY	1 cut(s)	978
PscI	ACATGT	1 cut(s)	738
Psp5II	RGGWCCY	1 cut(s)	978
PspN4I	GGNNCC	3 cut(s)	227, 280, 424
PspPI	GGNCC	2 cut(s)	278, 978
PspPPI	RGGWCCY	1 cut(s)	978
PspXI	VCTCGAGB	1 cut(s)	660
RsaI	GTAC	2 cut(s)	430, 450
RsaNI	GTAC	2 cut(s)	429, 449
RseI	CAYNNNNRTG	1 cut(s)	944
SaqAI	TTAA	4 cut(s)	189, 441, 639, 1018
SatI	GCNGC	5 cut(s)	313, 345, 477, 480, 768
Sau3AI	GATC	6 cut(s)	196, 666, 676, 712, 745, 900
Sau96I	GGNCC	2 cut(s)	278, 978
ScaI	AGTACT	1 cut(s)	430
ScrFI	CCNGG	1 cut(s)	489
SduI	GDGCHC	1 cut(s)	406
SfaNI	GCATC	6 cut(s)	124, 225, 392, 517, 754, 921
Sfr274I	CTCGAG	1 cut(s)	660
SinI	GGWCC	1 cut(s)	978
SlaI	CTCGAG	1 cut(s)	660
SmiMI	CAYNNNNRTG	1 cut(s)	944
SmlI	CTYRAG	2 cut(s)	188, 660
SmoI	CTYRAG	2 cut(s)	188, 660
Sse9I	AATT	8 cut(s)	70, 93, 285, 670, 771, 843, 870, 1002
SseBI	AGGCCT	1 cut(s)	644
SsiI	CCGC	4 cut(s)	214, 310, 435, 479
SspI	AATATT	1 cut(s)	246
SspMI	CTAG	7 cut(s)	230, 336, 380, 413, 935, 960, 990
StuI	AGGCCT	1 cut(s)	644
StyD4I	CCNGG	1 cut(s)	487
StyI	CCWWGG	2 cut(s)	148, 650
TaiI	ACGT	1 cut(s)	52
TaqI	TCGA	3 cut(s)	179, 661, 715
TasI	AATT	8 cut(s)	70, 93, 285, 670, 771, 843, 870, 1002
TatI	WGTACW	2 cut(s)	428, 448
TauI	GCSGC	1 cut(s)	482
Tru1I	TTAA	4 cut(s)	189, 441, 639, 1018
Tru9I	TTAA	4 cut(s)	189, 441, 639, 1018
TscAI	CASTG	4 cut(s)	105, 546, 555, 970
TseFI	GTSAC	1 cut(s)	491
TseI	GCWGC	4 cut(s)	312, 344, 476, 767
Tsp45I	GTSAC	1 cut(s)	491
TspDTI	ATGAA	2 cut(s)	525, 779
TspGWI	ACGGA	1 cut(s)	806
TspRI	CASTG	4 cut(s)	105, 546, 555, 970
Vha464I	CTTAAG	1 cut(s)	188
VpaK11BI	GGWCC	1 cut(s)	978
XapI	RAATTY	1 cut(s)	285
XceI	RCATGY	2 cut(s)	634, 742
XcmI	CCANNNNNNNNNTGG	1 cut(s)	598
XhoI	CTCGAG	1 cut(s)	660
XmiI	GTMKAC	1 cut(s)	820
XmnI	GAANNNNTTC	2 cut(s)	245, 843
XspI	CTAG	7 cut(s)	230, 336, 380, 413, 935, 960, 990
ZrmI	AGTACT	1 cut(s)	430

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.