Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005946

Physical Location & Seq

Genomic Coordinates Forward (+)

17849538 .. 17852279

Gene Structure 2742 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G37970.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGGAGAGATTATCAGGAGAGAAAGAGCAGAGCGTAGAGGCGTTTGGATGGGCCGCGAGAGACTCCTCAGGCCATCTCTCTCCCTTTGTCTTTTCTAGAAGGAAAACAGGAGAAGAGGAAGTGAGAGTGAAGGTGTTATATTGTGGAATATGTCATAGTGATCTCCATTGTCTCAAGAACGAATGGCATTCCTCTATTTACCCTTTGGTTCCTGGTCACGAGATTATTGGAGAAGTGAGTGAAATAGGGAACAAAGTAAGTAAATTCAATCTTGGAGACAAAGTCGGTGTGGGATGCATCGTAGATTCCTGCAGAACTTGCGAGAGTTGCCGAGAAGATCAAGAAAACTACTGCACAAAAGCAATCGCAACCTATAACGGAGTTCACCACGATGGAACGATTAACTACGGTGGATACTCCGACCATATCGTCGTCGATGAACGTTACGCTGTCAAAATTCCACACACATTGCCTCTAGTTTCGGCCGCACCTTTGCTTTGTGCAGGCATCTCGATGTACAGTCCTATGAAGTACTTCGGATTGACCGGACCGGATAAACATGTCGGAATCGTGGGGCTAGGTGGTCTTGGACACATTGGTGTGAGATTTGCTAAAGCATTTGGGACAAAAGTCACGGTGGTTAGTTCGACCACTGGGAAATCTAAGGATGCTCTTGACACTCTTGGAGCTGATGGATTCTTGGTTAGTACTGATGAAGACCAAATGAAGGCTGCAATGGGAACTATGGATGGCATAATTGATACAGTTTCTGCATCGCATTCGATTTCACCTTTGATTGGACTACTCAAATCCAACGGTAAACTTGTTCTACTCGGTGCAACGGAGAAGCCATTTGATATATCTGCATTTTCCTTAATATTGGGACGAAAATCGATAGCGGGAAGTGGTATTGGAGGAATGCAAGAGACACAAGAGATGATTGACTTTGCGGCAGAGCATGGCATAAAAGCAGAAATTGAGATCATATCCATGGATTATGTGAACACCGCCATGGATAGACTTGCCAAAGGGGATGTTAGATATCGATTTGTCATTGACATTTCTAATACATTGGCTGCTACTCGATCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009987 GO:0019438 GO:0019748 GO:0044237 GO:0044249 GO:0044550 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

363

Amino Acids

39.02

Weight (kDa)

5.91

Isoelectric Point (pI)

28.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_N	PF08240	37 - 154	6.8e-28	Alcohol dehydrogenase GroES-like domain
ADH_zinc_N	PF00107	195 - 318	2.3e-19	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005946)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37970 AT4G37970 AT4G37970 AT4G37970
malus_domestica	MD01G1043100.v1.1 MD15G1308500.v1.1 MD15G1308700.v1.1
prunus_persica	Prupe.6G208100_v2.0.a1 Prupe.6G208200_v2.0.a1 Prupe.6G208300_v2.0.a1
pyrus_communis	pycom01g07030 pycom15g27280
rosa_chinensis	RchiOBHm_Chr2g0110451 RchiOBHm_Chr2g0110461
rosa_laevigata	RLG00000017807
rosa_multiflora	Rmu_sc0000389.1_g000001 Rmu_sc0001393.1_g000001 Rmu_sc0020342.1_g000011 Rmu_sc0027350.1_g000001 Rmu_sc0038245.1_g000001
rosa_roxburghii	Rroxscaffold_2G00133390
rosa_rugosa	Rorug02G0167900 Rorug02G0168000
rosa_samantha	Rh2BG229100 Rh2CG221300 Rh2CG221400
rosa_wichuraiana	Rw2G016950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	428
AccII	CGCG	1 cut(s)	56
AciI	CCGC	5 cut(s)	54, 486, 899, 950, 1008
AclI	AACGTT	1 cut(s)	442
AcoI	YGGCCR	1 cut(s)	483
AcsI	RAATTY	2 cut(s)	263, 456
AfaI	GTAC	3 cut(s)	518, 533, 709
AfiI	CCNNNNNNNGG	2 cut(s)	727, 797
AflIII	ACRYGT	1 cut(s)	559
AgsI	TTSAA	1 cut(s)	268
AjnI	CCWGG	1 cut(s)	211
AleI	CACNNNNGTG	1 cut(s)	597
AluBI	AGCT	1 cut(s)	689
AluI	AGCT	1 cut(s)	689
Alw26I	GTCTC	4 cut(s)	54, 176, 270, 920
AlwNI	CAGNNNCTG	1 cut(s)	770
AoxI	GGCC	3 cut(s)	51, 70, 483
ApeKI	GCWGC	2 cut(s)	731, 1076
ApoI	RAATTY	2 cut(s)	263, 456
Asp700I	GAANNNNTTC	1 cut(s)	533
AspS9I	GGNCC	2 cut(s)	51, 548
AsuHPI	GGTGA	2 cut(s)	377, 780
AvaII	GGWCC	1 cut(s)	548
AxyI	CCTNAGG	1 cut(s)	67
BauI	CACGAG	1 cut(s)	218
BbsI	GAAGAC	1 cut(s)	723
BbvI	GCAGC	2 cut(s)	718, 1063
BccI	CCATC	5 cut(s)	42, 81, 386, 686, 743
BcgI	CGANNNNNNTGC	4 cut(s)	492, 526, 762, 796
BciT130I	CCWGG	1 cut(s)	213
BciVI	GTATCC	1 cut(s)	407
BcoDI	GTCTC	4 cut(s)	54, 176, 270, 920
BfaI	CTAG	3 cut(s)	96, 476, 578
BfmI	CTRYAG	1 cut(s)	310
BfuI	GTATCC	1 cut(s)	407
BisI	GCNGC	5 cut(s)	54, 486, 732, 951, 1077
BlsI	GCNGC	5 cut(s)	55, 487, 733, 952, 1078
BmcAI	AGTACT	2 cut(s)	533, 709
Bme1390I	CCNGG	1 cut(s)	213
Bme18I	GGWCC	1 cut(s)	548
BmgT120I	GGNCC	2 cut(s)	51, 548
BmiI	GGNNCC	1 cut(s)	210
BmrFI	CCNGG	1 cut(s)	213
BmrI	ACTGGG	1 cut(s)	663
BmsI	GCATC	5 cut(s)	284, 306, 516, 658, 782
BmuI	ACTGGG	1 cut(s)	663
BoxI	GACNNNNGTC	1 cut(s)	629
BpiI	GAAGAC	1 cut(s)	723
BpuEI	CTTGAG	1 cut(s)	158
Bsa29I	ATCGAT	2 cut(s)	893, 1045
BsaJI	CCNNGG	2 cut(s)	990, 1011
BsaWI	WCCGGW	2 cut(s)	545, 550
BsaXI	ACNNNNNCTCC	2 cut(s)	267, 297
Bsc4I	CCNNNNNNNGG	2 cut(s)	727, 797
Bse1I	ACTGG	1 cut(s)	658
Bse21I	CCTNAGG	1 cut(s)	67
Bse3DI	GCAATG	2 cut(s)	467, 741
BseBI	CCWGG	1 cut(s)	213
BseCI	ATCGAT	2 cut(s)	893, 1045
BseDI	CCNNGG	2 cut(s)	990, 1011
BseGI	GGATG	5 cut(s)	53, 299, 673, 754, 1039
BseLI	CCNNNNNNNGG	2 cut(s)	727, 797
BseMI	GCAATG	2 cut(s)	467, 741
BseMII	CTCAG	1 cut(s)	81
BseNI	ACTGG	1 cut(s)	658
BseRI	GAGGAG	1 cut(s)	55
BseX3I	CGGCCG	1 cut(s)	483
BseXI	GCAGC	2 cut(s)	718, 1063
BsgI	GTGCAG	2 cut(s)	337, 522
Bsh1236I	CGCG	1 cut(s)	56
Bsh1285I	CGRYCG	1 cut(s)	486
BshFI	GGCC	3 cut(s)	53, 72, 485
BshVI	ATCGAT	2 cut(s)	893, 1045
BsiEI	CGRYCG	1 cut(s)	486
BsiSI	CCGG	2 cut(s)	546, 551
BslFI	GGGAC	2 cut(s)	637, 897
BslI	CCNNNNNNNGG	2 cut(s)	727, 797
BsmAI	GTCTC	4 cut(s)	54, 176, 270, 920
BsmFI	GGGAC	2 cut(s)	637, 897
BsmI	GAATGC	3 cut(s)	187, 778, 924
BsnI	GGCC	3 cut(s)	53, 72, 485
Bsp1407I	TGTACA	1 cut(s)	516
Bsp143I	GATC	4 cut(s)	160, 337, 981, 1085
Bsp19I	CCATGG	2 cut(s)	990, 1011
BspACI	CCGC	5 cut(s)	54, 486, 899, 950, 1008
BspANI	GGCC	3 cut(s)	53, 72, 485
BspCNI	CTCAG	1 cut(s)	80
BspDI	ATCGAT	2 cut(s)	893, 1045
BspFNI	CGCG	1 cut(s)	56
BspLI	GGNNCC	1 cut(s)	210
BspMAI	CTGCAG	1 cut(s)	314
BsrDI	GCAATG	2 cut(s)	467, 741
BsrGI	TGTACA	1 cut(s)	516
BsrI	ACTGG	1 cut(s)	658
BssECI	CCNNGG	2 cut(s)	990, 1011
BssMI	GATC	4 cut(s)	160, 337, 981, 1085
BssSI	CACGAG	1 cut(s)	218
BssT1I	CCWWGG	2 cut(s)	990, 1011
Bst2BI	CACGAG	1 cut(s)	218
Bst2UI	CCWGG	1 cut(s)	213
Bst4CI	ACNGT	5 cut(s)	410, 521, 637, 766, 818
Bst6I	CTCTTC	1 cut(s)	108
BstAPI	GCANNNNNTGC	1 cut(s)	318
BstAUI	TGTACA	1 cut(s)	516
BstC8I	GCNNGC	1 cut(s)	505
BstDEI	CTNAG	2 cut(s)	67, 663
BstDSI	CCRYGG	2 cut(s)	990, 1011
BstF5I	GGATG	5 cut(s)	53, 299, 673, 754, 1039
BstFNI	CGCG	1 cut(s)	56
BstKTI	GATC	4 cut(s)	163, 340, 984, 1088
BstMAI	GTCTC	4 cut(s)	54, 176, 270, 920
BstMBI	GATC	4 cut(s)	160, 337, 981, 1085
BstMCI	CGRYCG	1 cut(s)	486
BstMWI	GCNNNNNNNGC	2 cut(s)	318, 327
BstNI	CCWGG	1 cut(s)	213
BstNSI	RCATGY	1 cut(s)	563
BstPAI	GACNNNNGTC	1 cut(s)	629
BstSCI	CCNGG	1 cut(s)	211
BstSFI	CTRYAG	1 cut(s)	310
BstUI	CGCG	1 cut(s)	56
BstV1I	GCAGC	2 cut(s)	718, 1063
BstV2I	GAAGAC	1 cut(s)	723
BstZI	CGGCCG	1 cut(s)	483
Bsu15I	ATCGAT	2 cut(s)	893, 1045
Bsu36I	CCTNAGG	1 cut(s)	67
BsuI	GTATCC	1 cut(s)	407
BsuRI	GGCC	3 cut(s)	53, 72, 485
BsuTUI	ATCGAT	2 cut(s)	893, 1045
BtgI	CCRYGG	2 cut(s)	990, 1011
BtgZI	GCGATG	1 cut(s)	759
BtsCI	GGATG	5 cut(s)	53, 299, 673, 754, 1039
BtsIMutI	CAGTG	1 cut(s)	651
Cac8I	GCNNGC	1 cut(s)	505
CaiI	CAGNNNCTG	1 cut(s)	770
Cfr13I	GGNCC	2 cut(s)	51, 548
ClaI	ATCGAT	2 cut(s)	893, 1045
CpoI	CGGWCCG	1 cut(s)	548
Csp6I	GTAC	3 cut(s)	517, 532, 708
CspCI	CAANNNNNGTGG	2 cut(s)	450, 485
CspI	CGGWCCG	1 cut(s)	548
CviAII	CATG	4 cut(s)	560, 959, 991, 1012
CviJI	RGCY	8 cut(s)	53, 72, 485, 577, 689, 731, 850, 1076
CviKI_1	RGCY	8 cut(s)	53, 72, 485, 577, 689, 731, 850, 1076
CviQI	GTAC	3 cut(s)	517, 532, 708
DdeI	CTNAG	2 cut(s)	67, 663
DpnI	GATC	4 cut(s)	162, 339, 983, 1087
DpnII	GATC	4 cut(s)	160, 337, 981, 1085
DrdI	GACNNNNNNGTC	1 cut(s)	428
DseDI	GACNNNNNNGTC	1 cut(s)	428
EaeI	YGGCCR	1 cut(s)	483
EagI	CGGCCG	1 cut(s)	483
Eam1104I	CTCTTC	1 cut(s)	108
EarI	CTCTTC	1 cut(s)	108
EclXI	CGGCCG	1 cut(s)	483
Eco130I	CCWWGG	2 cut(s)	990, 1011
Eco32I	GATATC	1 cut(s)	1043
Eco47I	GGWCC	1 cut(s)	548
Eco52I	CGGCCG	1 cut(s)	483
Eco81I	CCTNAGG	1 cut(s)	67
EcoRII	CCWGG	1 cut(s)	211
EcoRV	GATATC	1 cut(s)	1043
EcoT14I	CCWWGG	2 cut(s)	990, 1011
EcoT22I	ATGCAT	1 cut(s)	299
ErhI	CCWWGG	2 cut(s)	990, 1011
FaeI	CATG	4 cut(s)	563, 962, 994, 1015
FaqI	GGGAC	2 cut(s)	637, 897
FatI	CATG	4 cut(s)	559, 958, 990, 1011
FauI	CCCGC	1 cut(s)	892
Fnu4HI	GCNGC	5 cut(s)	54, 486, 732, 951, 1077
FokI	GGATG	5 cut(s)	60, 306, 680, 761, 1046
Fsp4HI	GCNGC	5 cut(s)	54, 486, 732, 951, 1077
FspBI	CTAG	3 cut(s)	96, 476, 578
GluI	GCNGC	5 cut(s)	54, 486, 732, 951, 1077
HaeIII	GGCC	3 cut(s)	53, 72, 485
HapII	CCGG	2 cut(s)	546, 551
Hin1II	CATG	4 cut(s)	563, 962, 994, 1015
HinfI	GANTC	4 cut(s)	62, 305, 567, 696
HpaII	CCGG	2 cut(s)	546, 551
HphI	GGTGA	2 cut(s)	377, 780
Hpy166II	GTNNAC	3 cut(s)	385, 821, 1003
Hpy188I	TCNGA	3 cut(s)	421, 539, 566
Hpy188III	TCNNGA	7 cut(s)	15, 96, 175, 218, 341, 511, 674
Hpy8I	GTNNAC	3 cut(s)	385, 821, 1003
Hpy99I	CGWCG	2 cut(s)	434, 437
HpyAV	CCTTC	3 cut(s)	93, 124, 721
HpyCH4III	ACNGT	5 cut(s)	410, 521, 637, 766, 818
HpyCH4IV	ACGT	1 cut(s)	442
HpyCH4V	TGCA	9 cut(s)	297, 312, 354, 503, 734, 773, 839, 866, 922
HpyF10VI	GCNNNNNNNGC	2 cut(s)	318, 327
HpyF3I	CTNAG	2 cut(s)	67, 663
HpySE526I	ACGT	1 cut(s)	442
Hsp92II	CATG	4 cut(s)	563, 962, 994, 1015
Kzo9I	GATC	4 cut(s)	160, 337, 981, 1085
LmnI	GCTCC	1 cut(s)	686
LpnPI	CCDG	9 cut(s)	54, 93, 198, 225, 322, 489, 559, 564, 639
Lsp1109I	GCAGC	2 cut(s)	718, 1063
LweI	GCATC	5 cut(s)	284, 306, 516, 658, 782
MaeI	CTAG	3 cut(s)	96, 476, 578
MaeII	ACGT	1 cut(s)	442
MaeIII	GTNAC	3 cut(s)	215, 443, 631
MalI	GATC	4 cut(s)	162, 339, 983, 1087
MboI	GATC	4 cut(s)	160, 337, 981, 1085
MboII	GAAGA	3 cut(s)	125, 347, 728
MluCI	AATT	4 cut(s)	263, 456, 756, 975
MlyI	GAGTC	1 cut(s)	56
MmeI	TCCRAC	3 cut(s)	444, 544, 837
MnlI	CCTC	6 cut(s)	31, 76, 109, 202, 483, 908
Mph1103I	ATGCAT	1 cut(s)	299
MroXI	GAANNNNTTC	1 cut(s)	533
MseI	TTAA	3 cut(s)	402, 875, 1090
MslI	CAYNNNNRTG	6 cut(s)	390, 512, 597, 599, 989, 1010
MspI	CCGG	2 cut(s)	546, 551
MspR9I	CCNGG	1 cut(s)	213
Mva1269I	GAATGC	3 cut(s)	187, 778, 924
MvaI	CCWGG	1 cut(s)	213
MvnI	CGCG	1 cut(s)	56
MwoI	GCNNNNNNNGC	2 cut(s)	318, 327
NcoI	CCATGG	2 cut(s)	990, 1011
NdeII	GATC	4 cut(s)	160, 337, 981, 1085
NlaIII	CATG	4 cut(s)	563, 962, 994, 1015
NlaIV	GGNNCC	1 cut(s)	210
NmeAIII	GCCGAG	1 cut(s)	356
NmuCI	GTSAC	2 cut(s)	215, 631
NsiI	ATGCAT	1 cut(s)	299
NspI	RCATGY	1 cut(s)	563
OliI	CACNNNNGTG	1 cut(s)	597
PciI	ACATGT	1 cut(s)	559
PctI	GAATGC	3 cut(s)	187, 778, 924
PdmI	GAANNNNTTC	1 cut(s)	533
PfeI	GAWTC	3 cut(s)	305, 567, 696
PflFI	GACNNNGTC	1 cut(s)	281
PkrI	GCNGC	5 cut(s)	55, 487, 733, 952, 1078
PleI	GAGTC	1 cut(s)	56
PpsI	GAGTC	1 cut(s)	56
PscI	ACATGT	1 cut(s)	559
PshAI	GACNNNNGTC	1 cut(s)	629
Psp1406I	AACGTT	1 cut(s)	442
Psp6I	CCWGG	1 cut(s)	211
PspGI	CCWGG	1 cut(s)	211
PspN4I	GGNNCC	1 cut(s)	210
PspPI	GGNCC	2 cut(s)	51, 548
PstI	CTGCAG	1 cut(s)	314
PstNI	CAGNNNCTG	1 cut(s)	770
PsyI	GACNNNGTC	1 cut(s)	281
RsaI	GTAC	3 cut(s)	518, 533, 709
RsaNI	GTAC	3 cut(s)	517, 532, 708
RseI	CAYNNNNRTG	6 cut(s)	390, 512, 597, 599, 989, 1010
Rsr2I	CGGWCCG	1 cut(s)	548
RsrII	CGGWCCG	1 cut(s)	548
SaqAI	TTAA	3 cut(s)	402, 875, 1090
SatI	GCNGC	5 cut(s)	54, 486, 732, 951, 1077
Sau3AI	GATC	4 cut(s)	160, 337, 981, 1085
Sau96I	GGNCC	2 cut(s)	51, 548
ScaI	AGTACT	2 cut(s)	533, 709
SchI	GAGTC	1 cut(s)	56
ScrFI	CCNGG	1 cut(s)	213
SetI	ASST	7 cut(s)	135, 374, 445, 493, 583, 691, 793
SfaNI	GCATC	5 cut(s)	284, 306, 516, 658, 782
SfcI	CTRYAG	1 cut(s)	310
SinI	GGWCC	1 cut(s)	548
SmiMI	CAYNNNNRTG	6 cut(s)	390, 512, 597, 599, 989, 1010
SmlI	CTYRAG	1 cut(s)	173
SmoI	CTYRAG	1 cut(s)	173
Sse9I	AATT	4 cut(s)	263, 456, 756, 975
SsiI	CCGC	5 cut(s)	54, 486, 899, 950, 1008
SspI	AATATT	1 cut(s)	879
SspMI	CTAG	3 cut(s)	96, 476, 578
StyD4I	CCNGG	1 cut(s)	211
StyI	CCWWGG	2 cut(s)	990, 1011
TaaI	ACNGT	5 cut(s)	410, 521, 637, 766, 818
TaiI	ACGT	1 cut(s)	445
TaqI	TCGA	7 cut(s)	435, 512, 647, 782, 893, 1045, 1084
TasI	AATT	4 cut(s)	263, 456, 756, 975
TatI	WGTACW	3 cut(s)	516, 531, 707
TauI	GCSGC	3 cut(s)	56, 488, 953
TfiI	GAWTC	3 cut(s)	305, 567, 696
Tru1I	TTAA	3 cut(s)	402, 875, 1090
Tru9I	TTAA	3 cut(s)	402, 875, 1090
TscAI	CASTG	1 cut(s)	658
TseFI	GTSAC	2 cut(s)	215, 631
TseI	GCWGC	2 cut(s)	731, 1076
Tsp45I	GTSAC	2 cut(s)	215, 631
TspDTI	ATGAA	4 cut(s)	453, 542, 729, 740
TspGWI	ACGGA	2 cut(s)	393, 857
TspRI	CASTG	1 cut(s)	658
Tth111I	GACNNNGTC	1 cut(s)	281
VpaK11BI	GGWCC	1 cut(s)	548
XapI	RAATTY	2 cut(s)	263, 456
XbaI	TCTAGA	1 cut(s)	95
XceI	RCATGY	1 cut(s)	563
XmnI	GAANNNNTTC	1 cut(s)	533
XspI	CTAG	3 cut(s)	96, 476, 578
ZrmI	AGTACT	2 cut(s)	533, 709
Zsp2I	ATGCAT	1 cut(s)	299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.