Rorug02G0167900

cinnamyl alcohol dehydrogenase 6

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Forward (+)
15072190 .. 15081932
9743 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0167900.1

Sequence Viewer

Length: 1872 bp
ATGAGAGCAGGGGCACTTGAATATGCTGGGTTTGTGAGGAAAGTGAGGACTCCTTCGATCTTGATCTTTACTCTTTCTTCATCCAAAGCAAAAGCCCCATCAACCTCTTGGAGAAGTCAAGCTCTGTGCCCTGCCTGGGAGTTTGTAGGGGGTGCAGCTCTTGGTGCAGCATTTGGGCTGTTGTTTGATGTTGTGAAGAAAGCAGTTGACAAGCCTAGTACCTTTAGATCCCTCTTTGAGAACATTAAATTTTCGCTTAAGTTTTTAAAACCAATGATCGAAAAGATTGGAGAACATAACGTGGAATTGGGTCTCCCAGATGAAGAAATAAAGTATATTATAAGAGAAATGGAGGAGGGTGTAAAGCTTGTCCAGAAGTCATCAAAGATCAGTAAGTGGAACTGCATGAAGTTTTATTACACGGATCAACTTATTGAACTAGATGGGTCTCTTAAAAGACTGTTAGATGTATTGATAGTGCAAGGATTAAGAGATGGGAAGGAGACTTTGATTTTGGCAAGAAAACACCAAGACCAACTTATTGAATCGGCAAGAGATGCAAAGGAGACCTTGGTTTTGGCACAAAAGAACAATGACCAGCTTATTGAATCAGCAAAGGATGGGAAAGAGACCTTAGTTCTGGCAAGACAAAATGCGGACCAACTTATTGATTCGTCAAGAGATGGGAAGGAGACCTTGGATTTGGCAAGACAAAACAATGTCCAGCTTATTGAATCAGCAAGGGATGGAAAGGAGACCCTGGTTTTGACCAAGAACATTAAAAGGTTTCTCAAACGAATTGAATGTTTGGTGCGTTGTACTTATAAAGGAAATTCCAGATATCACAGTGGGAGCAGAGTTTCAAAAGCAAGCAGAAGCGCAGGAAGAGATCGAATTTTGGAGACATCCAACTTAAGAGTTTACCGTTTTGCCGAGTTGAAGGATGCTACTCAGAATTTCAGGCAAGGTGAGTTTGGTTGTGGAGGCTTTGGGAGTATGTACAAGGGTTGGATGGATGAAAAGACGCTTGCACCTTCTAAGGTTGGCACTGGAATGGCCGTTGCTGTCAAGACATTTTACTCAGAAAGTATCGAAAGCATTAAACAGTGGCAGCTGGAGCTGAACTTCCTAGGAAGGGTTTCTCATCCGAACATTGTCAAGCTATTGGGATACTGTTGTGAGAAAAAGGAGATGTTCTTAATTTATGAATTCATTCCGAATGGAAGCTTACATAGTCATCTTTTTAACAGCATTTCTGTCGAGGAACCACTTTCTTGGGACATCAGACTCAAAATAGCTATTGGAGCTGCTCGGGGATTAAATTTCTTGCACAGTATACAAATCACACACAGAGATGTCAAACCCTCAAATATATTGCTTGACGAGGATTACAATACAAAACTATCAGATTTTTCCTTGGCAAAATGGGGGTCAGCTGATGGAGAGTTAGATGTGTCTACAGGGGTTTGTGGCACAATAGGATATATCGATCCAGAATACCTGAGAACAGGTCATGTGTGTGTGAAGAGCGATGTGTATAGCTTCGGTGTTTTGCTGCTTGAGATTCTGACAGGATTAAAGTCCTTCGATTTAAGCCGATCTGAGGAAGAATTTAGTCTGGCTAGGTGGGCTATACCACTTTTGTGTGATGAAACAAAGTTGCAAACCATCATGGATGAGCAGATTAAGGGCCAATATTCCTCCCAGGAAGCATTGCAGAGTGCACAGCTTGCTCTAAAATGTTTAGAAACAGATCCTGAAAGCCGACCTTCCATGAAAGAAGTTGTGGAGCAATTGGAAAACATTCAGGCATTGAAGGGAAAACCAGACCAGTCTGAGCTTACTACTATGCAGTATTCTTCTAATTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

623

Amino Acids

70.05

Weight (kDa)

7.87

Isoelectric Point (pI)

41.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RPW8 PF05659 47 - 177 3.2e-26 Arabidopsis broad-spectrum mildew resistance protein RPW8
PK_Tyr_Ser-Thr PF07714 324 - 599 1.4e-45 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 326 - 597 4.4e-45 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 341, 825
AccI GTMKAC 2 cut(s) 1336, 1457
AciI CCGC 1 cut(s) 656
AclWI GGATC 4 cut(s) 222, 432, 1484, 1748
AcoI YGGCCR 1 cut(s) 1056
AcsI RAATTY 7 cut(s) 248, 832, 894, 955, 1208, 1321, 1610
AfaI GTAC 3 cut(s) 220, 820, 1001
AfiI CCNNNNNNNGG 3 cut(s) 136, 1135, 1603
AflII CTTAAG 2 cut(s) 257, 913
AgsI TTSAA 9 cut(s) 20, 437, 545, 608, 734, 803, 864, 940, 1816
AjnI CCWGG 3 cut(s) 134, 759, 1704
AjuI GAANNNNNNNTTGG 2 cut(s) 680, 712
AleI CACNNNNGTG 1 cut(s) 1642
Alw21I GWGCWC 1 cut(s) 1726
Alw26I GTCTC 8 cut(s) 317, 453, 497, 560, 623, 686, 749, 896
Alw44I GTGCAC 1 cut(s) 1722
AlwI GGATC 4 cut(s) 222, 432, 1484, 1748
AlwNI CAGNNNCTG 1 cut(s) 1757
Ama87I CYCGRG 1 cut(s) 1311
AoxI GGCC 2 cut(s) 1056, 1690
ApaLI GTGCAC 1 cut(s) 1722
ApeKI GCWGC 5 cut(s) 155, 167, 1111, 1307, 1555
ApoI RAATTY 7 cut(s) 248, 832, 894, 955, 1208, 1321, 1610
Asp700I GAANNNNTTC 3 cut(s) 1138, 1212, 1803
AspA2I CCTAGG 1 cut(s) 1129
AspLEI GCGC 1 cut(s) 881
AspS9I GGNCC 2 cut(s) 658, 1690
AsuHPI GGTGA 1 cut(s) 980
AvaI CYCGRG 1 cut(s) 1311
AvaII GGWCC 1 cut(s) 658
AvrII CCTAGG 1 cut(s) 1129
BaeGI GKGCMC 3 cut(s) 16, 131, 1726
BaeI ACNNNNGTAYC 2 cut(s) 1162, 1195
BarI GAAGNNNNNNTAC 2 cut(s) 401, 433
Bbv12I GWGCWC 1 cut(s) 1726
BbvI GCAGC 5 cut(s) 167, 179, 1123, 1294, 1542
BccI CCATC 9 cut(s) 106, 437, 488, 614, 677, 740, 1006, 1433, 1676
BceAI ACGGC 1 cut(s) 1043
BcgI CGANNNNNNTGC 2 cut(s) 1240, 1274
BciT130I CCWGG 3 cut(s) 136, 761, 1706
BciVI GTATCC 1 cut(s) 1163
BcoDI GTCTC 8 cut(s) 317, 453, 497, 560, 623, 686, 749, 896
BfaI CTAG 4 cut(s) 216, 440, 1130, 1623
BfmI CTRYAG 1 cut(s) 1458
BfrI CTTAAG 2 cut(s) 257, 913
BfuI GTATCC 1 cut(s) 1163
BisI GCNGC 5 cut(s) 156, 168, 1112, 1308, 1556
BlnI CCTAGG 1 cut(s) 1129
BlsI GCNGC 5 cut(s) 157, 169, 1113, 1309, 1557
Bme1390I CCNGG 3 cut(s) 136, 761, 1706
Bme18I GGWCC 1 cut(s) 658
BmeT110I CYCGRG 1 cut(s) 1311
BmgT120I GGNCC 2 cut(s) 658, 1690
BmiI GGNNCC 1 cut(s) 1266
BmrFI CCNGG 3 cut(s) 136, 761, 1706
BmsI GCATC 2 cut(s) 547, 934
BpmI CTGGAG 1 cut(s) 1136
BpuEI CTTGAG 1 cut(s) 1580
Bsa29I ATCGAT 1 cut(s) 1488
BsaBI GATNNNNATC 1 cut(s) 62
BsaI GGTCTC 6 cut(s) 317, 453, 560, 623, 686, 749
BsaJI CCNNGG 7 cut(s) 135, 570, 696, 759, 1129, 1416, 1704
Bsc4I CCNNNNNNNGG 3 cut(s) 136, 1135, 1603
Bse1I ACTGG 2 cut(s) 1054, 1831
Bse3DI GCAATG 1 cut(s) 1712
Bse8I GATNNNNATC 1 cut(s) 62
BseBI CCWGG 3 cut(s) 136, 761, 1706
BseCI ATCGAT 1 cut(s) 1488
BseDI CCNNGG 7 cut(s) 135, 570, 696, 759, 1129, 1416, 1704
BseGI GGATG 9 cut(s) 80, 625, 751, 905, 949, 1017, 1021, 1144, 1681
BseJI GATNNNNATC 1 cut(s) 62
BseLI CCNNNNNNNGG 3 cut(s) 136, 1135, 1603
BseMI GCAATG 1 cut(s) 1712
BseMII CTCAG 5 cut(s) 965, 1095, 1493, 1593, 1827
BseNI ACTGG 2 cut(s) 1054, 1831
BseRI GAGGAG 1 cut(s) 368
BseSI GKGCMC 3 cut(s) 16, 131, 1726
BseXI GCAGC 5 cut(s) 167, 179, 1123, 1294, 1542
BseYI CCCAGC 1 cut(s) 26
BsgI GTGCAG 2 cut(s) 174, 186
BshFI GGCC 2 cut(s) 1058, 1692
BshVI ATCGAT 1 cut(s) 1488
BsiHKAI GWGCWC 1 cut(s) 1726
BsiHKCI CYCGRG 1 cut(s) 1311
BslFI GGGAC 1 cut(s) 1292
BslI CCNNNNNNNGG 3 cut(s) 136, 1135, 1603
BsmAI GTCTC 8 cut(s) 317, 453, 497, 560, 623, 686, 749, 896
BsmFI GGGAC 1 cut(s) 1292
BsnI GGCC 2 cut(s) 1058, 1692
Bso31I GGTCTC 6 cut(s) 317, 453, 560, 623, 686, 749
BsoBI CYCGRG 1 cut(s) 1311
Bsp1286I GDGCHC 3 cut(s) 16, 131, 1726
Bsp1407I TGTACA 1 cut(s) 999
BspACI CCGC 1 cut(s) 656
BspANI GGCC 2 cut(s) 1058, 1692
BspCNI CTCAG 5 cut(s) 964, 1094, 1494, 1594, 1828
BspDI ATCGAT 1 cut(s) 1488
BspLI GGNNCC 1 cut(s) 1266
BspPI GGATC 4 cut(s) 222, 432, 1484, 1748
BspQI GCTCTTC 1 cut(s) 1520
BspTI CTTAAG 2 cut(s) 257, 913
BspTNI GGTCTC 6 cut(s) 317, 453, 560, 623, 686, 749
BsrDI GCAATG 1 cut(s) 1712
BsrGI TGTACA 1 cut(s) 999
BsrI ACTGG 2 cut(s) 1054, 1831
BssECI CCNNGG 7 cut(s) 135, 570, 696, 759, 1129, 1416, 1704
BssNAI GTATAC 1 cut(s) 1337
BssT1I CCWWGG 4 cut(s) 570, 696, 1129, 1416
Bst1107I GTATAC 1 cut(s) 1337
Bst2UI CCWGG 3 cut(s) 136, 761, 1706
Bst4CI ACNGT 6 cut(s) 462, 848, 926, 1107, 1175, 1334
Bst6I CTCTTC 2 cut(s) 880, 1520
BstAFI CTTAAG 2 cut(s) 257, 913
BstAPI GCANNNNNTGC 2 cut(s) 557, 1730
BstAUI TGTACA 1 cut(s) 999
BstC8I GCNNGC 3 cut(s) 871, 1029, 1731
BstDEI CTNAG 7 cut(s) 634, 951, 1038, 1081, 1502, 1602, 1836
BstF5I GGATG 9 cut(s) 80, 625, 751, 905, 949, 1017, 1021, 1144, 1681
BstHHI GCGC 1 cut(s) 881
BstMAI GTCTC 8 cut(s) 317, 453, 497, 560, 623, 686, 749, 896
BstMWI GCNNNNNNNGC 6 cut(s) 164, 557, 1117, 1304, 1628, 1730
BstNI CCWGG 3 cut(s) 136, 761, 1706
BstSCI CCNGG 3 cut(s) 134, 759, 1704
BstSFI CTRYAG 1 cut(s) 1458
BstSLI GKGCMC 3 cut(s) 16, 131, 1726
BstV1I GCAGC 5 cut(s) 167, 179, 1123, 1294, 1542
BstX2I RGATCY 2 cut(s) 227, 1753
BstXI CCANNNNNNTGG 1 cut(s) 1275
BstYI RGATCY 2 cut(s) 227, 1753
BstZ17I GTATAC 1 cut(s) 1337
Bsu15I ATCGAT 1 cut(s) 1488
BsuI GTATCC 1 cut(s) 1163
BsuRI GGCC 2 cut(s) 1058, 1692
BsuTUI ATCGAT 1 cut(s) 1488
BtgZI GCGATG 1 cut(s) 1545
BtsCI GGATG 9 cut(s) 80, 625, 751, 905, 949, 1017, 1021, 1144, 1681
BtsIMutI CAGTG 3 cut(s) 853, 1047, 1112
Cac8I GCNNGC 3 cut(s) 871, 1029, 1731
CaiI CAGNNNCTG 1 cut(s) 1757
CfoI GCGC 1 cut(s) 881
Cfr13I GGNCC 2 cut(s) 658, 1690
ClaI ATCGAT 1 cut(s) 1488
CseI GACGC 1 cut(s) 1033
Csp6I GTAC 3 cut(s) 219, 819, 1000
CviAII CATG 4 cut(s) 406, 1514, 1672, 1774
CviQI GTAC 3 cut(s) 219, 819, 1000
DdeI CTNAG 7 cut(s) 634, 951, 1038, 1081, 1502, 1602, 1836
DraI TTTAAA 1 cut(s) 267
EaeI YGGCCR 1 cut(s) 1056
Eam1104I CTCTTC 2 cut(s) 880, 1520
EarI CTCTTC 2 cut(s) 880, 1520
Eco130I CCWWGG 4 cut(s) 570, 696, 1129, 1416
Eco31I GGTCTC 6 cut(s) 317, 453, 560, 623, 686, 749
Eco32I GATATC 1 cut(s) 842
Eco47I GGWCC 1 cut(s) 658
Eco88I CYCGRG 1 cut(s) 1311
EcoRI GAATTC 1 cut(s) 1208
EcoRII CCWGG 3 cut(s) 134, 759, 1704
EcoRV GATATC 1 cut(s) 842
EcoT14I CCWWGG 4 cut(s) 570, 696, 1129, 1416
ErhI CCWWGG 4 cut(s) 570, 696, 1129, 1416
FaeI CATG 4 cut(s) 409, 1517, 1675, 1777
FalI AAGNNNNNCTT 8 cut(s) 522, 554, 554, 586, 680, 712, 1753, 1785
FaqI GGGAC 1 cut(s) 1292
FatI CATG 4 cut(s) 405, 1513, 1671, 1773
FblI GTMKAC 2 cut(s) 1336, 1457
Fnu4HI GCNGC 5 cut(s) 156, 168, 1112, 1308, 1556
FokI GGATG 9 cut(s) 67, 632, 758, 892, 956, 1024, 1028, 1131, 1688
Fsp4HI GCNGC 5 cut(s) 156, 168, 1112, 1308, 1556
FspBI CTAG 4 cut(s) 216, 440, 1130, 1623
GlaI GCGC 1 cut(s) 880
GluI GCNGC 5 cut(s) 156, 168, 1112, 1308, 1556
GsaI CCCAGC 1 cut(s) 30
GsuI CTGGAG 1 cut(s) 1136
HaeIII GGCC 2 cut(s) 1058, 1692
HgaI GACGC 1 cut(s) 1033
HhaI GCGC 1 cut(s) 881
Hin1II CATG 4 cut(s) 409, 1517, 1675, 1777
Hin6I GCGC 1 cut(s) 879
HinP1I GCGC 1 cut(s) 879
HincII GTYRAC 1 cut(s) 208
HindII GTYRAC 1 cut(s) 208
HindIII AAGCTT 2 cut(s) 365, 1225
HinfI GANTC 7 cut(s) 49, 545, 608, 671, 734, 1287, 1564
HphI GGTGA 1 cut(s) 980
Hpy166II GTNNAC 5 cut(s) 208, 922, 1337, 1458, 1724
Hpy188I TCNGA 9 cut(s) 954, 1084, 1149, 1218, 1286, 1408, 1569, 1603, 1837
Hpy188III TCNNGA 7 cut(s) 61, 373, 678, 837, 1069, 1493, 1757
Hpy8I GTNNAC 5 cut(s) 208, 922, 1337, 1458, 1724
HpyAV CCTTC 9 cut(s) 63, 493, 682, 934, 1044, 1128, 1594, 1779, 1810
HpyCH4III ACNGT 6 cut(s) 462, 848, 926, 1107, 1175, 1334
HpyCH4IV ACGT 1 cut(s) 300
HpyF10VI GCNNNNNNNGC 6 cut(s) 164, 557, 1117, 1304, 1628, 1730
HpyF3I CTNAG 7 cut(s) 634, 951, 1038, 1081, 1502, 1602, 1836
HpySE526I ACGT 1 cut(s) 300
Hsp92II CATG 4 cut(s) 409, 1517, 1675, 1777
HspAI GCGC 1 cut(s) 879
LguI GCTCTTC 1 cut(s) 1520
LmnI GCTCC 4 cut(s) 852, 1117, 1304, 1789
Lsp1109I GCAGC 5 cut(s) 167, 179, 1123, 1294, 1542
LweI GCATC 2 cut(s) 547, 934
MaeI CTAG 4 cut(s) 216, 440, 1130, 1623
MaeII ACGT 1 cut(s) 300
MboII GAAGA 7 cut(s) 69, 208, 335, 897, 1537, 1619, 1851
MfeI CAATTG 1 cut(s) 1793
MflI RGATCY 2 cut(s) 227, 1753
MhlI GDGCHC 3 cut(s) 16, 131, 1726
MlyI GAGTC 2 cut(s) 43, 1281
MmeI TCCRAC 2 cut(s) 933, 989
MroXI GAANNNNTTC 3 cut(s) 1138, 1212, 1803
MslI CAYNNNNRTG 4 cut(s) 1052, 1353, 1518, 1642
MspA1I CMGCKG 2 cut(s) 1114, 1436
MspCI CTTAAG 2 cut(s) 257, 913
MspR9I CCNGG 3 cut(s) 136, 761, 1706
MunI CAATTG 1 cut(s) 1793
MvaI CCWGG 3 cut(s) 136, 761, 1706
MwoI GCNNNNNNNGC 6 cut(s) 164, 557, 1117, 1304, 1628, 1730
NlaIII CATG 4 cut(s) 409, 1517, 1675, 1777
NlaIV GGNNCC 1 cut(s) 1266
NmeAIII GCCGAG 1 cut(s) 958
OliI CACNNNNGTG 1 cut(s) 1642
PciSI GCTCTTC 1 cut(s) 1520
PdmI GAANNNNTTC 3 cut(s) 1138, 1212, 1803
PfeI GAWTC 5 cut(s) 545, 608, 671, 734, 1564
PkrI GCNGC 5 cut(s) 157, 169, 1113, 1309, 1557
PleI GAGTC 2 cut(s) 43, 1281
PpsI GAGTC 2 cut(s) 43, 1281
PsiI TTATAA 2 cut(s) 341, 825
Psp6I CCWGG 3 cut(s) 134, 759, 1704
PspFI CCCAGC 1 cut(s) 26
PspGI CCWGG 3 cut(s) 134, 759, 1704
PspN4I GGNNCC 1 cut(s) 1266
PspPI GGNCC 2 cut(s) 658, 1690
PstNI CAGNNNCTG 1 cut(s) 1757
PsuI RGATCY 2 cut(s) 227, 1753
PvuII CAGCTG 2 cut(s) 1114, 1436
RsaI GTAC 3 cut(s) 220, 820, 1001
RsaNI GTAC 3 cut(s) 219, 819, 1000
RseI CAYNNNNRTG 4 cut(s) 1052, 1353, 1518, 1642
SapI GCTCTTC 1 cut(s) 1520
SatI GCNGC 5 cut(s) 156, 168, 1112, 1308, 1556
Sau96I GGNCC 2 cut(s) 658, 1690
SchI GAGTC 2 cut(s) 43, 1281
ScrFI CCNGG 3 cut(s) 136, 761, 1706
SduI GDGCHC 3 cut(s) 16, 131, 1726
SfaNI GCATC 2 cut(s) 547, 934
SfcI CTRYAG 1 cut(s) 1458
SinI GGWCC 1 cut(s) 658
SmiMI CAYNNNNRTG 4 cut(s) 1052, 1353, 1518, 1642
SmlI CTYRAG 3 cut(s) 257, 913, 1559
SmoI CTYRAG 3 cut(s) 257, 913, 1559
SsiI CCGC 1 cut(s) 656
SspI AATATT 1 cut(s) 1697
SspMI CTAG 4 cut(s) 216, 440, 1130, 1623
StyD4I CCNGG 3 cut(s) 134, 759, 1704
StyI CCWWGG 4 cut(s) 570, 696, 1129, 1416
TaaI ACNGT 6 cut(s) 462, 848, 926, 1107, 1175, 1334
TaiI ACGT 1 cut(s) 303
TaqI TCGA 7 cut(s) 56, 279, 892, 1092, 1260, 1488, 1587
TatI WGTACW 2 cut(s) 818, 999
TfiI GAWTC 5 cut(s) 545, 608, 671, 734, 1564
TscAI CASTG 3 cut(s) 853, 1054, 1112
TseI GCWGC 5 cut(s) 155, 167, 1111, 1307, 1555
TspDTI ATGAA 8 cut(s) 69, 336, 422, 1032, 1201, 1221, 1665, 1790
TspGWI ACGGA 1 cut(s) 437
TspRI CASTG 3 cut(s) 853, 1054, 1112
Vha464I CTTAAG 2 cut(s) 257, 913
VneI GTGCAC 1 cut(s) 1722
VpaK11BI GGWCC 1 cut(s) 658
XapI RAATTY 7 cut(s) 248, 832, 894, 955, 1208, 1321, 1610
XcmI CCANNNNNNNNNTGG 1 cut(s) 105
XmaJI CCTAGG 1 cut(s) 1129
XmiI GTMKAC 2 cut(s) 1336, 1457
XmnI GAANNNNTTC 3 cut(s) 1138, 1212, 1803
XspI CTAG 4 cut(s) 216, 440, 1130, 1623
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.