Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0005946

Physical Location & Seq

Genomic Coordinates Forward (+)

22194945 .. 22198044

Gene Structure 3100 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG221300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGGTGATCATGACACCGGAAACAGAGCACCCTGTGAAGGCCTTTGGCTGGGCTGCTAGAGACTCATCTGGGCATCTGTCTCCCTTTAACTTCTCCAGAAGGCACGAGATAGTGGGAGAAGTAACAGAAGTAGGAAGCAAGGTGAAGAAAGTAAAAGTGGGAGATAAAGTGGGTGTGGGTGGTGTTGTTGGTGCATGCCATGACTGCCGCAAATGTGACAATGACCTTGAAATTTACTGCCCCAAATCGATTTTTACCTACGGTGACATATACCACGATGGAACAGTAACATACGGAGGTTACTCTGATTCAATGGTTGCCAGCAAGCGCTACATCATCCATTTTCCGGATAACATGCCGCTAGCCGCCGGAGCACCTCTACTATGTGCTGGGATCACAGTGTATAGTCCCTTGAAGTACTTCGGGTTAGCGGAGCCTGGTATGCATATTGGCATTGTTGGCTTTGGTGGGCTAGGTCATATGGGTGTGAAATTTGCCAAGGCTTTTGGGGCGAAAGTGACTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009987 GO:0019438 GO:0019748 GO:0044237 GO:0044249 GO:0044550 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

175

Amino Acids

18.75

Weight (kDa)

7.69

Isoelectric Point (pI)

36.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_N	PF08240	27 - 117	4e-13	Alcohol dehydrogenase GroES-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0005946)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37970 AT4G37970 AT4G37970 AT4G37970
malus_domestica	MD01G1043100.v1.1 MD15G1308500.v1.1 MD15G1308700.v1.1
prunus_persica	Prupe.6G208100_v2.0.a1 Prupe.6G208200_v2.0.a1 Prupe.6G208300_v2.0.a1
pyrus_communis	pycom01g07030 pycom15g27280
rosa_chinensis	RchiOBHm_Chr2g0110451 RchiOBHm_Chr2g0110461
rosa_laevigata	RLG00000017807
rosa_multiflora	Rmu_sc0000389.1_g000001 Rmu_sc0001393.1_g000001 Rmu_sc0020342.1_g000011 Rmu_sc0027350.1_g000001 Rmu_sc0038245.1_g000001
rosa_roxburghii	Rroxscaffold_2G00133390
rosa_rugosa	Rorug02G0167900 Rorug02G0168000
rosa_samantha	Rh2BG229100 Rh2CG221300 Rh2CG221400
rosa_wichuraiana	Rw2G016950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	346
AciI	CCGC	4 cut(s)	208, 359, 366, 431
AclWI	GGATC	1 cut(s)	401
AcsI	RAATTY	2 cut(s)	231, 491
AdeI	CACNNNGTG	1 cut(s)	34
AfaI	GTAC	1 cut(s)	419
AfeI	AGCGCT	1 cut(s)	329
AfiI	CCNNNNNNNGG	3 cut(s)	37, 48, 346
AgsI	TTSAA	3 cut(s)	230, 312, 415
AjnI	CCWGG	1 cut(s)	436
Alw21I	GWGCWC	2 cut(s)	30, 376
Alw26I	GTCTC	2 cut(s)	54, 84
AlwI	GGATC	1 cut(s)	401
Aor13HI	TCCGGA	1 cut(s)	346
Aor51HI	AGCGCT	1 cut(s)	329
AoxI	GGCC	1 cut(s)	39
ApeKI	GCWGC	1 cut(s)	53
ApoI	RAATTY	2 cut(s)	231, 491
Asp700I	GAANNNNTTC	1 cut(s)	419
AspLEI	GCGC	1 cut(s)	330
AsuHPI	GGTGA	3 cut(s)	16, 154, 275
AsuNHI	GCTAGC	1 cut(s)	361
BauI	CACGAG	1 cut(s)	104
Bbv12I	GWGCWC	2 cut(s)	30, 376
BbvI	GCAGC	1 cut(s)	40
BccI	CCATC	1 cut(s)	272
BciT130I	CCWGG	1 cut(s)	438
BclI	TGATCA	1 cut(s)	6
BcoDI	GTCTC	2 cut(s)	54, 84
BfaI	CTAG	3 cut(s)	57, 362, 473
BfoI	RGCGCY	1 cut(s)	331
BisI	GCNGC	4 cut(s)	54, 208, 359, 366
BlsI	GCNGC	4 cut(s)	55, 209, 360, 367
BmcAI	AGTACT	1 cut(s)	419
Bme1390I	CCNGG	1 cut(s)	438
BmiI	GGNNCC	1 cut(s)	435
BmrFI	CCNGG	1 cut(s)	438
BmsI	GCATC	1 cut(s)	82
BmtI	GCTAGC	1 cut(s)	365
BpmI	CTGGAG	1 cut(s)	79
Bsa29I	ATCGAT	1 cut(s)	248
BsaJI	CCNNGG	1 cut(s)	498
BsaWI	WCCGGW	2 cut(s)	16, 346
BsaXI	ACNNNNNCTCC	2 cut(s)	153, 183
Bsc4I	CCNNNNNNNGG	3 cut(s)	37, 48, 346
BseAI	TCCGGA	1 cut(s)	346
BseBI	CCWGG	1 cut(s)	438
BseCI	ATCGAT	1 cut(s)	248
BseDI	CCNNGG	1 cut(s)	498
BseGI	GGATG	1 cut(s)	336
BseLI	CCNNNNNNNGG	3 cut(s)	37, 48, 346
BseXI	GCAGC	1 cut(s)	40
BseYI	CCCAGC	2 cut(s)	48, 389
BshFI	GGCC	1 cut(s)	41
BshVI	ATCGAT	1 cut(s)	248
BsiHKAI	GWGCWC	2 cut(s)	30, 376
BsiSI	CCGG	3 cut(s)	17, 347, 369
BslFI	GGGAC	1 cut(s)	393
BslI	CCNNNNNNNGG	3 cut(s)	37, 48, 346
BsmAI	GTCTC	2 cut(s)	54, 84
BsmFI	GGGAC	1 cut(s)	393
BsnI	GGCC	1 cut(s)	41
Bsp1286I	GDGCHC	2 cut(s)	30, 376
Bsp13I	TCCGGA	1 cut(s)	346
Bsp143I	GATC	2 cut(s)	6, 393
BspACI	CCGC	4 cut(s)	208, 359, 366, 431
BspANI	GGCC	1 cut(s)	41
BspDI	ATCGAT	1 cut(s)	248
BspEI	TCCGGA	1 cut(s)	346
BspHI	TCATGA	1 cut(s)	9
BspLI	GGNNCC	1 cut(s)	435
BspOI	GCTAGC	1 cut(s)	365
BspPI	GGATC	1 cut(s)	401
BssECI	CCNNGG	1 cut(s)	498
BssMI	GATC	2 cut(s)	6, 393
BssSI	CACGAG	1 cut(s)	104
BssT1I	CCWWGG	1 cut(s)	498
Bst2BI	CACGAG	1 cut(s)	104
Bst2UI	CCWGG	1 cut(s)	438
Bst4CI	ACNGT	3 cut(s)	263, 286, 400
BstC8I	GCNNGC	4 cut(s)	196, 322, 326, 363
BstF5I	GGATG	1 cut(s)	336
BstH2I	RGCGCY	1 cut(s)	331
BstHHI	GCGC	1 cut(s)	330
BstKTI	GATC	2 cut(s)	9, 396
BstMAI	GTCTC	2 cut(s)	54, 84
BstMBI	GATC	2 cut(s)	6, 393
BstMWI	GCNNNNNNNGC	5 cut(s)	204, 371, 442, 459, 509
BstNI	CCWGG	1 cut(s)	438
BstNSI	RCATGY	2 cut(s)	198, 358
BstSCI	CCNGG	1 cut(s)	436
BstV1I	GCAGC	1 cut(s)	40
Bsu15I	ATCGAT	1 cut(s)	248
BsuRI	GGCC	1 cut(s)	41
BsuTUI	ATCGAT	1 cut(s)	248
BtsCI	GGATG	1 cut(s)	336
BtsIMutI	CAGTG	1 cut(s)	405
Cac8I	GCNNGC	4 cut(s)	196, 322, 326, 363
CciI	TCATGA	1 cut(s)	9
CfoI	GCGC	1 cut(s)	330
ClaI	ATCGAT	1 cut(s)	248
Csp6I	GTAC	1 cut(s)	418
CviAII	CATG	4 cut(s)	10, 195, 200, 355
CviJI	RGCY	8 cut(s)	41, 48, 53, 365, 436, 462, 472, 503
CviKI_1	RGCY	8 cut(s)	41, 48, 53, 365, 436, 462, 472, 503
CviQI	GTAC	1 cut(s)	418
DpnI	GATC	2 cut(s)	8, 395
DpnII	GATC	2 cut(s)	6, 393
DraIII	CACNNNGTG	1 cut(s)	34
Eco130I	CCWWGG	1 cut(s)	498
Eco147I	AGGCCT	1 cut(s)	41
Eco47III	AGCGCT	1 cut(s)	329
EcoRII	CCWGG	1 cut(s)	436
EcoT14I	CCWWGG	1 cut(s)	498
EcoT22I	ATGCAT	1 cut(s)	447
ErhI	CCWWGG	1 cut(s)	498
FaeI	CATG	4 cut(s)	13, 198, 203, 358
FaqI	GGGAC	1 cut(s)	393
FatI	CATG	4 cut(s)	9, 194, 199, 354
FauNDI	CATATG	1 cut(s)	480
FbaI	TGATCA	1 cut(s)	6
Fnu4HI	GCNGC	4 cut(s)	54, 208, 359, 366
FokI	GGATG	1 cut(s)	323
Fsp4HI	GCNGC	4 cut(s)	54, 208, 359, 366
FspBI	CTAG	3 cut(s)	57, 362, 473
GlaI	GCGC	1 cut(s)	329
GluI	GCNGC	4 cut(s)	54, 208, 359, 366
GsaI	CCCAGC	2 cut(s)	52, 393
GsuI	CTGGAG	1 cut(s)	79
HaeII	RGCGCY	1 cut(s)	331
HaeIII	GGCC	1 cut(s)	41
HapII	CCGG	3 cut(s)	17, 347, 369
HhaI	GCGC	1 cut(s)	330
Hin1II	CATG	4 cut(s)	13, 198, 203, 358
Hin6I	GCGC	1 cut(s)	328
HinP1I	GCGC	1 cut(s)	328
HinfI	GANTC	2 cut(s)	62, 308
HpaII	CCGG	3 cut(s)	17, 347, 369
HphI	GGTGA	3 cut(s)	16, 154, 275
Hpy188I	TCNGA	1 cut(s)	307
Hpy188III	TCNNGA	3 cut(s)	10, 96, 347
HpyAV	CCTTC	2 cut(s)	31, 93
HpyCH4III	ACNGT	3 cut(s)	263, 286, 400
HpyCH4V	TGCA	2 cut(s)	194, 445
HpyF10VI	GCNNNNNNNGC	5 cut(s)	204, 371, 442, 459, 509
Hsp92II	CATG	4 cut(s)	13, 198, 203, 358
HspAI	GCGC	1 cut(s)	328
Kpn2I	TCCGGA	1 cut(s)	346
Ksp22I	TGATCA	1 cut(s)	6
Kzo9I	GATC	2 cut(s)	6, 393
LmnI	GCTCC	2 cut(s)	371, 433
Lsp1109I	GCAGC	1 cut(s)	40
LweI	GCATC	1 cut(s)	82
MaeI	CTAG	3 cut(s)	57, 362, 473
MaeIII	GTNAC	6 cut(s)	121, 215, 263, 286, 299, 517
MalI	GATC	2 cut(s)	8, 395
MboI	GATC	2 cut(s)	6, 393
MboII	GAAGA	1 cut(s)	157
MhlI	GDGCHC	2 cut(s)	30, 376
MluCI	AATT	2 cut(s)	231, 491
MlyI	GAGTC	1 cut(s)	56
MnlI	CCTC	2 cut(s)	290, 387
Mph1103I	ATGCAT	1 cut(s)	447
MroI	TCCGGA	1 cut(s)	346
MroXI	GAANNNNTTC	1 cut(s)	419
MseI	TTAA	1 cut(s)	87
MslI	CAYNNNNRTG	1 cut(s)	483
MspI	CCGG	3 cut(s)	17, 347, 369
MspR9I	CCNGG	1 cut(s)	438
MvaI	CCWGG	1 cut(s)	438
MwoI	GCNNNNNNNGC	5 cut(s)	204, 371, 442, 459, 509
NdeI	CATATG	1 cut(s)	480
NdeII	GATC	2 cut(s)	6, 393
NheI	GCTAGC	1 cut(s)	361
NlaIII	CATG	4 cut(s)	13, 198, 203, 358
NlaIV	GGNNCC	1 cut(s)	435
NmuCI	GTSAC	3 cut(s)	215, 263, 517
NsiI	ATGCAT	1 cut(s)	447
NspI	RCATGY	2 cut(s)	198, 358
PaeI	GCATGC	1 cut(s)	198
PagI	TCATGA	1 cut(s)	9
PceI	AGGCCT	1 cut(s)	41
PdmI	GAANNNNTTC	1 cut(s)	419
PfeI	GAWTC	1 cut(s)	308
PkrI	GCNGC	4 cut(s)	55, 209, 360, 367
PleI	GAGTC	1 cut(s)	56
PpsI	GAGTC	1 cut(s)	56
Psp6I	CCWGG	1 cut(s)	436
PspFI	CCCAGC	2 cut(s)	48, 389
PspGI	CCWGG	1 cut(s)	436
PspN4I	GGNNCC	1 cut(s)	435
RsaI	GTAC	1 cut(s)	419
RsaNI	GTAC	1 cut(s)	418
RseI	CAYNNNNRTG	1 cut(s)	483
SaqAI	TTAA	1 cut(s)	87
SatI	GCNGC	4 cut(s)	54, 208, 359, 366
Sau3AI	GATC	2 cut(s)	6, 393
ScaI	AGTACT	1 cut(s)	419
SchI	GAGTC	1 cut(s)	56
ScrFI	CCNGG	1 cut(s)	438
SduI	GDGCHC	2 cut(s)	30, 376
SetI	ASST	6 cut(s)	144, 228, 260, 301, 379, 478
SfaNI	GCATC	1 cut(s)	82
SmiMI	CAYNNNNRTG	1 cut(s)	483
SphI	GCATGC	1 cut(s)	198
Sse9I	AATT	2 cut(s)	231, 491
SseBI	AGGCCT	1 cut(s)	41
SsiI	CCGC	4 cut(s)	208, 359, 366, 431
SspMI	CTAG	3 cut(s)	57, 362, 473
StuI	AGGCCT	1 cut(s)	41
StyD4I	CCNGG	1 cut(s)	436
StyI	CCWWGG	1 cut(s)	498
TaaI	ACNGT	3 cut(s)	263, 286, 400
TaqI	TCGA	1 cut(s)	248
TasI	AATT	2 cut(s)	231, 491
TatI	WGTACW	1 cut(s)	417
TauI	GCSGC	3 cut(s)	210, 361, 368
TfiI	GAWTC	1 cut(s)	308
Tru1I	TTAA	1 cut(s)	87
Tru9I	TTAA	1 cut(s)	87
TscAI	CASTG	1 cut(s)	405
TseFI	GTSAC	3 cut(s)	215, 263, 517
TseI	GCWGC	1 cut(s)	53
Tsp45I	GTSAC	3 cut(s)	215, 263, 517
TspGWI	ACGGA	1 cut(s)	309
TspRI	CASTG	1 cut(s)	405
XapI	RAATTY	2 cut(s)	231, 491
XceI	RCATGY	2 cut(s)	198, 358
XmnI	GAANNNNTTC	1 cut(s)	419
XspI	CTAG	3 cut(s)	57, 362, 473
ZrmI	AGTACT	1 cut(s)	419
Zsp2I	ATGCAT	1 cut(s)	447

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.