Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0005946

Physical Location & Seq

Genomic Coordinates Reverse (-)

14171778 .. 14175937

Gene Structure 4160 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1043100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

ATGGCAAAGGCTCCAGAACAAGAACACCCTGTGAAGGCCTTTGGATGGGCTGCTAGAGACACATCTGGCCACCTCTCTCCCTTTAACTTCTCCAGAAGATCAACAGGTGATGAGGATGTGAGGTTTAAGGTGTTGTATTGTGGGATATGCCACACTGATCTTCATAACATCAAGAATGAATGGGGTATCTCTTTGTACCCTATGGTTCCTGGGCACGAGATTGTGGGGGAAGTTACAGAAGTGGGAAGCAAGGTGAGTAAAGTGAAAGAAGGAGACAAAGTGGGTGTGGGCTGCATGGTTGGTGCTTGCCATGCATGTGAGAGCTGTAACAGCAACCTTGAAAACTACTGCCCCAAAATGATACTTACCTACGGTTCCATTTACGCCGACAGAACTGTCACATATGGAGGTTACTCGGACACAATGGTCGCCAATGAGCGCTACATTGTTCGTTTCCCCGAGAACCTGCCACTTGACGCTGGTGCTCCTCTACTTTGTGCAGGGATCACAGTTTATAGTCCCCTGAAGTATTTTGGCTTAGCCGAGCCTGGTAAGCATGTTGGCATTGTAGGCCTTGGCGGGCTTGGTCACGTTGGTGTGAAATTCGCTAAGGCCTTTGGGGCAAAAGTGACTGTGATTAGTACCTCCCCTAGCAAGAAAGATGAAGCTCTGAAGCAACTTGGGGCTGATTCATTCGTGGTTAGCCGCGACCCCCAGCAAATGCAGGCTGCCATAGGAACACTGGATGGCATCATCGACACAGTCTCAGCTGCGCATCCCATTGTGCCCTTACTTGGTCTTTTGAAGCCCCATGGGAAACTTATTCTGGTGGGCGTACCAGAAAAGCCACTTGACCTCCATGTGTTTCCTTTAATCATGGGAAGGAAGTCGGTGGCGGGTAGTGGAATCGGAGGAATGAAGGAGACCCAAGAAATGATTGATTTTGCAGCAAAACATAATATAACGGCGGATGTTGAAGTTATCTCAATGGATTACGTGAACACAGCAATGGAGCGTCTCGCTAAGAATGACGTTAGATACCGATTTGTGATTGATGTTGGAAACACACTGGCTGCTAGCAAAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009987 GO:0019438 GO:0019748 GO:0044237 GO:0044249 GO:0044550 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

363

Amino Acids

38.89

Weight (kDa)

6.64

Isoelectric Point (pI)

26.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_N	PF08240	36 - 154	1.6e-24	Alcohol dehydrogenase GroES-like domain
ADH_zinc_N	PF00107	194 - 317	4.7e-23	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005946)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37970 AT4G37970 AT4G37970 AT4G37970
malus_domestica	MD01G1043100.v1.1 MD15G1308500.v1.1 MD15G1308700.v1.1
prunus_persica	Prupe.6G208100_v2.0.a1 Prupe.6G208200_v2.0.a1 Prupe.6G208300_v2.0.a1
pyrus_communis	pycom01g07030 pycom15g27280
rosa_chinensis	RchiOBHm_Chr2g0110451 RchiOBHm_Chr2g0110461
rosa_laevigata	RLG00000017807
rosa_multiflora	Rmu_sc0000389.1_g000001 Rmu_sc0001393.1_g000001 Rmu_sc0020342.1_g000011 Rmu_sc0027350.1_g000001 Rmu_sc0038245.1_g000001
rosa_roxburghii	Rroxscaffold_2G00133390
rosa_rugosa	Rorug02G0167900 Rorug02G0168000
rosa_samantha	Rh2BG229100 Rh2CG221300 Rh2CG221400
rosa_wichuraiana	Rw2G016950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	395, 425
Acc16I	TGCGCA	1 cut(s)	774
Acc36I	ACCTGC	1 cut(s)	474
AccII	CGCG	1 cut(s)	708
AciI	CCGC	4 cut(s)	579, 706, 896, 968
AclWI	GGATC	1 cut(s)	512
AcoI	YGGCCR	1 cut(s)	67
AcsI	RAATTY	1 cut(s)	602
AcuI	CTGAAG	2 cut(s)	545, 692
AdeI	CACNNNGTG	1 cut(s)	31
AfaI	GTAC	3 cut(s)	197, 643, 837
AfeI	AGCGCT	1 cut(s)	440
AfiI	CCNNNNNNNGG	3 cut(s)	34, 45, 794
AgsI	TTSAA	3 cut(s)	341, 805, 977
AjnI	CCWGG	2 cut(s)	208, 547
AleI	CACNNNNGTG	1 cut(s)	594
AluBI	AGCT	3 cut(s)	324, 668, 770
AluI	AGCT	3 cut(s)	324, 668, 770
Alw21I	GWGCWC	1 cut(s)	487
Alw26I	GTCTC	5 cut(s)	51, 267, 769, 917, 1022
AlwI	GGATC	1 cut(s)	512
Ama87I	CYCGRG	1 cut(s)	458
Aor51HI	AGCGCT	1 cut(s)	440
AoxI	GGCC	4 cut(s)	36, 67, 571, 612
ApeKI	GCWGC	6 cut(s)	50, 291, 728, 770, 947, 1073
ApoI	RAATTY	1 cut(s)	602
AspLEI	GCGC	2 cut(s)	441, 775
AsuHPI	GGTGA	2 cut(s)	119, 265
AsuNHI	GCTAGC	1 cut(s)	1076
AvaI	CYCGRG	1 cut(s)	458
BaeGI	GKGCMC	2 cut(s)	216, 789
BalI	TGGCCA	1 cut(s)	69
BauI	CACGAG	1 cut(s)	215
Bbv12I	GWGCWC	1 cut(s)	487
BbvI	GCAGC	6 cut(s)	37, 278, 715, 757, 959, 1060
BccI	CCATC	2 cut(s)	39, 740
BceAI	ACGGC	1 cut(s)	981
BciT130I	CCWGG	2 cut(s)	210, 549
BcoDI	GTCTC	5 cut(s)	51, 267, 769, 917, 1022
BfaI	CTAG	3 cut(s)	54, 651, 1077
BfoI	RGCGCY	1 cut(s)	442
BfuAI	ACCTGC	1 cut(s)	474
BglI	GCCNNNNNGGC	1 cut(s)	620
BisI	GCNGC	7 cut(s)	51, 292, 706, 729, 771, 948, 1074
BlpI	GCTNAGC	1 cut(s)	538
BlsI	GCNGC	7 cut(s)	52, 293, 707, 730, 772, 949, 1075
Bme1390I	CCNGG	2 cut(s)	210, 549
BmeT110I	CYCGRG	1 cut(s)	458
BmiI	GGNNCC	3 cut(s)	12, 207, 376
BmrFI	CCNGG	2 cut(s)	210, 549
BmsI	GCATC	2 cut(s)	759, 784
BmtI	GCTAGC	1 cut(s)	1080
BpmI	CTGGAG	1 cut(s)	76
Bpu10I	CCTNAGC	1 cut(s)	609
Bpu1102I	GCTNAGC	1 cut(s)	538
BsaAI	YACGTR	1 cut(s)	997
BsaI	GGTCTC	1 cut(s)	917
BsaJI	CCNNGG	3 cut(s)	209, 574, 811
BsaXI	ACNNNNNCTCC	4 cut(s)	264, 294, 840, 870
Bsc4I	CCNNNNNNNGG	3 cut(s)	34, 45, 794
Bse1I	ACTGG	2 cut(s)	747, 1074
Bse3DI	GCAATG	1 cut(s)	1014
BseBI	CCWGG	2 cut(s)	210, 549
BseDI	CCNNGG	3 cut(s)	209, 574, 811
BseGI	GGATG	5 cut(s)	50, 121, 751, 775, 976
BseLI	CCNNNNNNNGG	3 cut(s)	34, 45, 794
BseMI	GCAATG	1 cut(s)	1014
BseMII	CTCAG	1 cut(s)	780
BseNI	ACTGG	2 cut(s)	747, 1074
BseRI	GAGGAG	1 cut(s)	477
BseSI	GKGCMC	2 cut(s)	216, 789
BseXI	GCAGC	6 cut(s)	37, 278, 715, 757, 959, 1060
BseYI	CCCAGC	1 cut(s)	714
BsgI	GTGCAG	1 cut(s)	519
Bsh1236I	CGCG	1 cut(s)	708
BshFI	GGCC	4 cut(s)	38, 69, 573, 614
BsiHKAI	GWGCWC	1 cut(s)	487
BsiHKCI	CYCGRG	1 cut(s)	458
BslFI	GGGAC	1 cut(s)	504
BslI	CCNNNNNNNGG	3 cut(s)	34, 45, 794
BsmAI	GTCTC	5 cut(s)	51, 267, 769, 917, 1022
BsmBI	CGTCTC	1 cut(s)	1022
BsmFI	GGGAC	1 cut(s)	504
BsnI	GGCC	4 cut(s)	38, 69, 573, 614
Bso31I	GGTCTC	1 cut(s)	917
BsoBI	CYCGRG	1 cut(s)	458
Bsp1286I	GDGCHC	3 cut(s)	216, 487, 789
Bsp143I	GATC	3 cut(s)	98, 157, 504
Bsp1720I	GCTNAGC	1 cut(s)	538
Bsp19I	CCATGG	1 cut(s)	811
BspACI	CCGC	4 cut(s)	579, 706, 896, 968
BspANI	GGCC	4 cut(s)	38, 69, 573, 614
BspCNI	CTCAG	1 cut(s)	779
BspFNI	CGCG	1 cut(s)	708
BspLI	GGNNCC	3 cut(s)	12, 207, 376
BspMI	ACCTGC	1 cut(s)	474
BspOI	GCTAGC	1 cut(s)	1080
BspPI	GGATC	1 cut(s)	512
BspTNI	GGTCTC	1 cut(s)	917
BsrDI	GCAATG	1 cut(s)	1014
BsrI	ACTGG	2 cut(s)	747, 1074
BssECI	CCNNGG	3 cut(s)	209, 574, 811
BssMI	GATC	3 cut(s)	98, 157, 504
BssSI	CACGAG	1 cut(s)	215
BssT1I	CCWWGG	2 cut(s)	574, 811
Bst2BI	CACGAG	1 cut(s)	215
Bst2UI	CCWGG	2 cut(s)	210, 549
Bst4CI	ACNGT	5 cut(s)	374, 397, 511, 634, 763
BstBAI	YACGTR	1 cut(s)	997
BstC8I	GCNNGC	4 cut(s)	307, 581, 726, 1078
BstDEI	CTNAG	4 cut(s)	538, 609, 766, 1023
BstDSI	CCRYGG	1 cut(s)	811
BstF5I	GGATG	5 cut(s)	50, 121, 751, 775, 976
BstFNI	CGCG	1 cut(s)	708
BstH2I	RGCGCY	1 cut(s)	442
BstHHI	GCGC	2 cut(s)	441, 775
BstKTI	GATC	3 cut(s)	101, 160, 507
BstMAI	GTCTC	5 cut(s)	51, 267, 769, 917, 1022
BstMBI	GATC	3 cut(s)	98, 157, 504
BstMWI	GCNNNNNNNGC	5 cut(s)	311, 330, 553, 570, 620
BstNI	CCWGG	2 cut(s)	210, 549
BstNSI	RCATGY	2 cut(s)	318, 560
BstSCI	CCNGG	2 cut(s)	208, 547
BstSLI	GKGCMC	2 cut(s)	216, 789
BstUI	CGCG	1 cut(s)	708
BstV1I	GCAGC	6 cut(s)	37, 278, 715, 757, 959, 1060
BsuRI	GGCC	4 cut(s)	38, 69, 573, 614
BtgI	CCRYGG	1 cut(s)	811
BtsCI	GGATG	5 cut(s)	50, 121, 751, 775, 976
BtsIMutI	CAGTG	3 cut(s)	153, 740, 1067
BveI	ACCTGC	1 cut(s)	474
Cac8I	GCNNGC	4 cut(s)	307, 581, 726, 1078
CfoI	GCGC	2 cut(s)	441, 775
CseI	GACGC	2 cut(s)	485, 1004
Csp6I	GTAC	3 cut(s)	196, 642, 836
CviAII	CATG	7 cut(s)	295, 311, 315, 557, 812, 860, 877
CviQI	GTAC	3 cut(s)	196, 642, 836
DdeI	CTNAG	4 cut(s)	538, 609, 766, 1023
DpnI	GATC	3 cut(s)	100, 159, 506
DpnII	GATC	3 cut(s)	98, 157, 504
DraIII	CACNNNGTG	1 cut(s)	31
DrdI	GACNNNNNNGTC	2 cut(s)	395, 425
DseDI	GACNNNNNNGTC	2 cut(s)	395, 425
EaeI	YGGCCR	1 cut(s)	67
EciI	GGCGGA	1 cut(s)	983
Eco130I	CCWWGG	2 cut(s)	574, 811
Eco147I	AGGCCT	3 cut(s)	38, 573, 614
Eco31I	GGTCTC	1 cut(s)	917
Eco47III	AGCGCT	1 cut(s)	440
Eco57I	CTGAAG	2 cut(s)	545, 692
Eco88I	CYCGRG	1 cut(s)	458
EcoRII	CCWGG	2 cut(s)	208, 547
EcoT14I	CCWWGG	2 cut(s)	574, 811
EcoT22I	ATGCAT	1 cut(s)	316
ErhI	CCWWGG	2 cut(s)	574, 811
Esp3I	CGTCTC	1 cut(s)	1022
FaeI	CATG	7 cut(s)	298, 314, 318, 560, 815, 863, 880
FaqI	GGGAC	1 cut(s)	504
FatI	CATG	7 cut(s)	294, 310, 314, 556, 811, 859, 876
FauI	CCCGC	2 cut(s)	572, 889
FauNDI	CATATG	1 cut(s)	403
Fnu4HI	GCNGC	7 cut(s)	51, 292, 706, 729, 771, 948, 1074
FokI	GGATG	5 cut(s)	57, 128, 758, 762, 983
Fsp4HI	GCNGC	7 cut(s)	51, 292, 706, 729, 771, 948, 1074
FspBI	CTAG	3 cut(s)	54, 651, 1077
FspI	TGCGCA	1 cut(s)	774
GlaI	GCGC	2 cut(s)	440, 774
GluI	GCNGC	7 cut(s)	51, 292, 706, 729, 771, 948, 1074
GsaI	CCCAGC	1 cut(s)	718
GsuI	CTGGAG	1 cut(s)	76
HaeII	RGCGCY	1 cut(s)	442
HaeIII	GGCC	4 cut(s)	38, 69, 573, 614
HgaI	GACGC	2 cut(s)	485, 1004
HhaI	GCGC	2 cut(s)	441, 775
Hin1II	CATG	7 cut(s)	298, 314, 318, 560, 815, 863, 880
Hin6I	GCGC	2 cut(s)	439, 773
HinP1I	GCGC	2 cut(s)	439, 773
HinfI	GANTC	2 cut(s)	689, 906
HphI	GGTGA	2 cut(s)	119, 265
Hpy166II	GTNNAC	1 cut(s)	1000
Hpy188I	TCNGA	3 cut(s)	418, 672, 911
Hpy188III	TCNNGA	3 cut(s)	14, 93, 172
Hpy8I	GTNNAC	1 cut(s)	1000
HpyAV	CCTTC	4 cut(s)	28, 263, 876, 913
HpyCH4III	ACNGT	5 cut(s)	374, 397, 511, 634, 763
HpyCH4IV	ACGT	3 cut(s)	591, 996, 1032
HpyCH4V	TGCA	5 cut(s)	294, 314, 500, 724, 947
HpyF10VI	GCNNNNNNNGC	5 cut(s)	311, 330, 553, 570, 620
HpyF3I	CTNAG	4 cut(s)	538, 609, 766, 1023
HpySE526I	ACGT	3 cut(s)	591, 996, 1032
Hsp92II	CATG	7 cut(s)	298, 314, 318, 560, 815, 863, 880
HspAI	GCGC	2 cut(s)	439, 773
Kzo9I	GATC	3 cut(s)	98, 157, 504
LmnI	GCTCC	3 cut(s)	16, 490, 1012
Lsp1109I	GCAGC	6 cut(s)	37, 278, 715, 757, 959, 1060
LweI	GCATC	2 cut(s)	759, 784
MaeI	CTAG	3 cut(s)	54, 651, 1077
MaeII	ACGT	3 cut(s)	591, 996, 1032
MaeIII	GTNAC	6 cut(s)	232, 326, 397, 410, 587, 628
MalI	GATC	3 cut(s)	100, 159, 506
MboI	GATC	3 cut(s)	98, 157, 504
MboII	GAAGA	2 cut(s)	108, 152
MhlI	GDGCHC	3 cut(s)	216, 487, 789
MlsI	TGGCCA	1 cut(s)	69
MluCI	AATT	1 cut(s)	602
MluNI	TGGCCA	1 cut(s)	69
MmeI	TCCRAC	1 cut(s)	1039
MnlI	CCTC	8 cut(s)	83, 106, 114, 401, 498, 655, 866, 905
Mox20I	TGGCCA	1 cut(s)	69
Mph1103I	ATGCAT	1 cut(s)	316
MscI	TGGCCA	1 cut(s)	69
MseI	TTAA	3 cut(s)	84, 126, 872
MslI	CAYNNNNRTG	3 cut(s)	315, 594, 1007
Msp20I	TGGCCA	1 cut(s)	69
MspA1I	CMGCKG	1 cut(s)	770
MspR9I	CCNGG	2 cut(s)	210, 549
MvaI	CCWGG	2 cut(s)	210, 549
MvnI	CGCG	1 cut(s)	708
MwoI	GCNNNNNNNGC	5 cut(s)	311, 330, 553, 570, 620
NcoI	CCATGG	1 cut(s)	811
NdeI	CATATG	1 cut(s)	403
NdeII	GATC	3 cut(s)	98, 157, 504
NheI	GCTAGC	1 cut(s)	1076
NlaIII	CATG	7 cut(s)	298, 314, 318, 560, 815, 863, 880
NlaIV	GGNNCC	3 cut(s)	12, 207, 376
NmeAIII	GCCGAG	1 cut(s)	568
NmuCI	GTSAC	3 cut(s)	397, 587, 628
NsbI	TGCGCA	1 cut(s)	774
NsiI	ATGCAT	1 cut(s)	316
NspI	RCATGY	2 cut(s)	318, 560
OliI	CACNNNNGTG	1 cut(s)	594
PceI	AGGCCT	3 cut(s)	38, 573, 614
PfeI	GAWTC	2 cut(s)	689, 906
PflFI	GACNNNGTC	1 cut(s)	761
PkrI	GCNGC	7 cut(s)	52, 293, 707, 730, 772, 949, 1075
Ppu21I	YACGTR	1 cut(s)	997
Psp6I	CCWGG	2 cut(s)	208, 547
PspFI	CCCAGC	1 cut(s)	714
PspGI	CCWGG	2 cut(s)	208, 547
PspN4I	GGNNCC	3 cut(s)	12, 207, 376
PsyI	GACNNNGTC	1 cut(s)	761
PvuII	CAGCTG	1 cut(s)	770
RsaI	GTAC	3 cut(s)	197, 643, 837
RsaNI	GTAC	3 cut(s)	196, 642, 836
RseI	CAYNNNNRTG	3 cut(s)	315, 594, 1007
SaqAI	TTAA	3 cut(s)	84, 126, 872
SatI	GCNGC	7 cut(s)	51, 292, 706, 729, 771, 948, 1074
Sau3AI	GATC	3 cut(s)	98, 157, 504
ScrFI	CCNGG	2 cut(s)	210, 549
SduI	GDGCHC	3 cut(s)	216, 487, 789
SfaNI	GCATC	2 cut(s)	759, 784
SmiMI	CAYNNNNRTG	3 cut(s)	315, 594, 1007
Sse9I	AATT	1 cut(s)	602
SseBI	AGGCCT	3 cut(s)	38, 573, 614
SsiI	CCGC	4 cut(s)	579, 706, 896, 968
SspMI	CTAG	3 cut(s)	54, 651, 1077
StuI	AGGCCT	3 cut(s)	38, 573, 614
StyD4I	CCNGG	2 cut(s)	208, 547
StyI	CCWWGG	2 cut(s)	574, 811
TaaI	ACNGT	5 cut(s)	374, 397, 511, 634, 763
TaiI	ACGT	3 cut(s)	594, 999, 1035
TaqI	TCGA	1 cut(s)	756
TasI	AATT	1 cut(s)	602
TauI	GCSGC	1 cut(s)	708
TfiI	GAWTC	2 cut(s)	689, 906
Tru1I	TTAA	3 cut(s)	84, 126, 872
Tru9I	TTAA	3 cut(s)	84, 126, 872
TscAI	CASTG	3 cut(s)	160, 747, 1074
TseFI	GTSAC	3 cut(s)	397, 587, 628
TseI	GCWGC	6 cut(s)	50, 291, 728, 770, 947, 1073
Tsp45I	GTSAC	3 cut(s)	397, 587, 628
TspDTI	ATGAA	5 cut(s)	152, 192, 678, 681, 932
TspRI	CASTG	3 cut(s)	160, 747, 1074
Tth111I	GACNNNGTC	1 cut(s)	761
XapI	RAATTY	1 cut(s)	602
XceI	RCATGY	2 cut(s)	318, 560
XcmI	CCANNNNNNNNNTGG	1 cut(s)	739
XspI	CTAG	3 cut(s)	54, 651, 1077
Zsp2I	ATGCAT	1 cut(s)	316

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.