Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0027350.1

Orthogroup ID

OG0005946

Physical Location & Seq

Genomic Coordinates Forward (+)

516 .. 924

Gene Structure 409 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0027350.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

atgacactggaaacagagcaccctgtgaaggcctttggctgggctgctagagactcatctgggcatctctgtcccttaaacttctccagaagagaaacaggtgatgaagacgtgaggtttaaggtgctgtactgtgggatatgccacactgaacttagcaacctcaagaatgaatggggattatcaaagtaccctatagttccagggtatggctctcaagctttgataatattttttatctccaacaatcaagatttaaattatagccctttaaatattttgttatttaaattatgttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009987 GO:0019438 GO:0019748 GO:0044237 GO:0044249 GO:0044550 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

99

Amino Acids

11.25

Weight (kDa)

6.25

Isoelectric Point (pI)

35.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005946)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37970 AT4G37970 AT4G37970 AT4G37970
malus_domestica	MD01G1043100.v1.1 MD15G1308500.v1.1 MD15G1308700.v1.1
prunus_persica	Prupe.6G208100_v2.0.a1 Prupe.6G208200_v2.0.a1 Prupe.6G208300_v2.0.a1
pyrus_communis	pycom01g07030 pycom15g27280
rosa_chinensis	RchiOBHm_Chr2g0110451 RchiOBHm_Chr2g0110461
rosa_laevigata	RLG00000017807
rosa_multiflora	Rmu_sc0000389.1_g000001 Rmu_sc0001393.1_g000001 Rmu_sc0020342.1_g000011 Rmu_sc0027350.1_g000001 Rmu_sc0038245.1_g000001
rosa_roxburghii	Rroxscaffold_2G00133390
rosa_rugosa	Rorug02G0167900 Rorug02G0168000
rosa_samantha	Rh2BG229100 Rh2CG221300 Rh2CG221400
rosa_wichuraiana	Rw2G016950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	209
AdeI	CACNNNGTG	1 cut(s)	25
AfaI	GTAC	2 cut(s)	131, 191
AfiI	CCNNNNNNNGG	3 cut(s)	28, 39, 209
AjiI	CACGTC	1 cut(s)	112
AjnI	CCWGG	1 cut(s)	202
AluBI	AGCT	1 cut(s)	221
AluI	AGCT	1 cut(s)	221
Alw21I	GWGCWC	1 cut(s)	21
Alw26I	GTCTC	1 cut(s)	45
AoxI	GGCC	1 cut(s)	30
ApeKI	GCWGC	1 cut(s)	44
AsuHPI	GGTGA	1 cut(s)	113
BbsI	GAAGAC	1 cut(s)	114
Bbv12I	GWGCWC	1 cut(s)	21
BbvI	GCAGC	1 cut(s)	31
BciT130I	CCWGG	1 cut(s)	204
BcoDI	GTCTC	1 cut(s)	45
BfaI	CTAG	1 cut(s)	48
BfmI	CTRYAG	1 cut(s)	195
BisI	GCNGC	1 cut(s)	45
BlsI	GCNGC	1 cut(s)	46
Bme1390I	CCNGG	1 cut(s)	204
BmgBI	CACGTC	1 cut(s)	112
BmrFI	CCNGG	1 cut(s)	204
BmsI	GCATC	1 cut(s)	73
BpiI	GAAGAC	1 cut(s)	114
BpmI	CTGGAG	1 cut(s)	70
BpuEI	CTTGAG	2 cut(s)	149, 201
BsaJI	CCNNGG	1 cut(s)	203
Bsc4I	CCNNNNNNNGG	3 cut(s)	28, 39, 209
Bse1I	ACTGG	1 cut(s)	12
BseBI	CCWGG	1 cut(s)	204
BseDI	CCNNGG	1 cut(s)	203
BseLI	CCNNNNNNNGG	3 cut(s)	28, 39, 209
BseNI	ACTGG	1 cut(s)	12
BseXI	GCAGC	1 cut(s)	31
BseYI	CCCAGC	1 cut(s)	39
BshFI	GGCC	1 cut(s)	32
BsiHKAI	GWGCWC	1 cut(s)	21
BslFI	GGGAC	1 cut(s)	57
BslI	CCNNNNNNNGG	3 cut(s)	28, 39, 209
BsmAI	GTCTC	1 cut(s)	45
BsmFI	GGGAC	1 cut(s)	57
BsnI	GGCC	1 cut(s)	32
Bsp1286I	GDGCHC	1 cut(s)	21
BspANI	GGCC	1 cut(s)	32
BsrI	ACTGG	1 cut(s)	12
BssECI	CCNNGG	1 cut(s)	203
Bst2UI	CCWGG	1 cut(s)	204
Bst4CI	ACNGT	1 cut(s)	134
Bst6I	CTCTTC	1 cut(s)	85
BstDEI	CTNAG	1 cut(s)	155
BstMAI	GTCTC	1 cut(s)	45
BstNI	CCWGG	1 cut(s)	204
BstSCI	CCNGG	1 cut(s)	202
BstSFI	CTRYAG	1 cut(s)	195
BstV1I	GCAGC	1 cut(s)	31
BstV2I	GAAGAC	1 cut(s)	114
BsuRI	GGCC	1 cut(s)	32
BtrI	CACGTC	1 cut(s)	112
BtsIMutI	CAGTG	2 cut(s)	5, 147
Csp6I	GTAC	2 cut(s)	130, 190
CviJI	RGCY	6 cut(s)	32, 39, 44, 213, 221, 267
CviKI_1	RGCY	6 cut(s)	32, 39, 44, 213, 221, 267
CviQI	GTAC	2 cut(s)	130, 190
DdeI	CTNAG	1 cut(s)	155
DraI	TTTAAA	3 cut(s)	258, 273, 289
DraIII	CACNNNGTG	1 cut(s)	25
Eam1104I	CTCTTC	1 cut(s)	85
EarI	CTCTTC	1 cut(s)	85
Eco147I	AGGCCT	1 cut(s)	32
EcoRII	CCWGG	1 cut(s)	202
FaiI	YATR	5 cut(s)	142, 197, 210, 264, 295
FaqI	GGGAC	1 cut(s)	57
Fnu4HI	GCNGC	1 cut(s)	45
Fsp4HI	GCNGC	1 cut(s)	45
FspBI	CTAG	1 cut(s)	48
GluI	GCNGC	1 cut(s)	45
GsaI	CCCAGC	1 cut(s)	43
GsuI	CTGGAG	1 cut(s)	70
HaeIII	GGCC	1 cut(s)	32
HindIII	AAGCTT	1 cut(s)	219
HinfI	GANTC	1 cut(s)	53
HphI	GGTGA	1 cut(s)	113
Hpy188III	TCNNGA	3 cut(s)	87, 166, 251
HpyAV	CCTTC	1 cut(s)	22
HpyCH4III	ACNGT	1 cut(s)	134
HpyCH4IV	ACGT	1 cut(s)	111
HpyF3I	CTNAG	1 cut(s)	155
HpySE526I	ACGT	1 cut(s)	111
LpnPI	CCDG	7 cut(s)	25, 36, 45, 84, 100, 189, 216
Lsp1109I	GCAGC	1 cut(s)	31
LweI	GCATC	1 cut(s)	73
MaeI	CTAG	1 cut(s)	48
MaeII	ACGT	1 cut(s)	111
MboII	GAAGA	2 cut(s)	102, 119
MhlI	GDGCHC	1 cut(s)	21
MluCI	AATT	2 cut(s)	259, 290
MlyI	GAGTC	1 cut(s)	47
MmeI	TCCRAC	1 cut(s)	267
MnlI	CCTC	2 cut(s)	108, 173
MseI	TTAA	6 cut(s)	77, 120, 257, 272, 288, 298
MspR9I	CCNGG	1 cut(s)	204
MvaI	CCWGG	1 cut(s)	204
PceI	AGGCCT	1 cut(s)	32
PflMI	CCANNNNNTGG	1 cut(s)	209
PkrI	GCNGC	1 cut(s)	46
PleI	GAGTC	1 cut(s)	47
PpsI	GAGTC	1 cut(s)	47
Psp6I	CCWGG	1 cut(s)	202
PspFI	CCCAGC	1 cut(s)	39
PspGI	CCWGG	1 cut(s)	202
RsaI	GTAC	2 cut(s)	131, 191
RsaNI	GTAC	2 cut(s)	130, 190
SaqAI	TTAA	6 cut(s)	77, 120, 257, 272, 288, 298
SatI	GCNGC	1 cut(s)	45
SchI	GAGTC	1 cut(s)	47
ScrFI	CCNGG	1 cut(s)	204
SduI	GDGCHC	1 cut(s)	21
SetI	ASST	6 cut(s)	103, 114, 119, 126, 165, 223
SfaNI	GCATC	1 cut(s)	73
SfcI	CTRYAG	1 cut(s)	195
SmiI	ATTTAAAT	2 cut(s)	258, 289
SmlI	CTYRAG	2 cut(s)	164, 216
SmoI	CTYRAG	2 cut(s)	164, 216
Sse9I	AATT	2 cut(s)	259, 290
SseBI	AGGCCT	1 cut(s)	32
SspI	AATATT	2 cut(s)	231, 277
SspMI	CTAG	1 cut(s)	48
StuI	AGGCCT	1 cut(s)	32
StyD4I	CCNGG	1 cut(s)	202
SwaI	ATTTAAAT	2 cut(s)	258, 289
TaaI	ACNGT	1 cut(s)	134
TaiI	ACGT	1 cut(s)	114
TasI	AATT	2 cut(s)	259, 290
TatI	WGTACW	1 cut(s)	129
Tru1I	TTAA	6 cut(s)	77, 120, 257, 272, 288, 298
Tru9I	TTAA	6 cut(s)	77, 120, 257, 272, 288, 298
TscAI	CASTG	2 cut(s)	12, 154
TseI	GCWGC	1 cut(s)	44
TspDTI	ATGAA	2 cut(s)	120, 186
TspRI	CASTG	2 cut(s)	12, 154
Van91I	CCANNNNNTGG	1 cut(s)	209
XspI	CTAG	1 cut(s)	48

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.