Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0005946

Physical Location & Seq

Genomic Coordinates Reverse (-)

21670165 .. 21673838

Gene Structure 3674 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G208100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGGCAAAGGCACCAGAACAAGAACATCCTGTTAAAGCATTTGGCTGGGCTGCCAGAGACAGCACATCGGGGCATCTCTCTCCCTTTAACTTCTCCAGAAGGGCAACAGGTGATGAGGACGTGCGGTTTAAGGTGTTGTTCTGTGGCATATGCCACTCTGACCTTCACAGCATCAAGAATGATTGGGGCTTCTCTATATACCCTATAGTTCCTGGGCACGAGATTGTGGGTGAAGTGACAGAAGTGGGAAGCAAGGTGAAGAAAGTAAAAGTGGGAGAAAAAGTGGGCGTAGGTGTGATGGTTGGTGCTTGTGATTCATGCGAGAGCTGCAACAACCACCTTGAAAATTACTGCCCCAAAATGATACTTACCTACGGCGCCATTTACCACGACGGAACAATAACTTATGGAGGCTACTCAGACACAATGGTTGCCAGTGAGCGTTACATTGTACGTTTCCCTGAGAACATGCCACTGGATGCTGGGGCTCCTCTGCTTTGTGCTGGGATCACAGTCTATAGCCCCTTGAAATATTTTGGGTTAGGAGAACCTGGGAAGCATGTTGGCATTGTAGGCCTTGGCGGGCTTGGTCATGTTGGAGTGAAATTTGCCAAGGCCCTCGGGGCAAAGGTGACTGTGATTAGTACCTCCCCTAGCAAGAAAGATGAAGCTTTGAACCATTTGGGTGCTGATGAGTTTTTAGTTATCCGTGACCAGGATCAATTGCAGGCTGCCATGGGCACATTTGATGGCATCATTGACACAGTTTCTGCTGTGCATCCCATTGTTCCCCTGATTGGCCTTTTGAAGTCACATGGGAAGCTTATTCTGGTGGGTGCACCGGAAAAGCCACTAGAGCTGCCTGTGTTTCCATTAATCACGGGAAGGAAGATAGTGGCGGGTAGTGGAATTGGAGGGATTAAGGAAACTCAGGAGATGATTGATTTCGCAGCAAAACACAACATAACTGCAGAAATTGAGCTTATCTCAATGGATTATTTGAATACAGCATTGGAACGCCTTGCGAAAAACGACGTTAGATACCGATTTGTGATTGACATTGGAAACACTTTGGCTGCTACCAAGCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009987 GO:0019438 GO:0019748 GO:0044237 GO:0044249 GO:0044550 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

364

Amino Acids

39.0

Weight (kDa)

6.36

Isoelectric Point (pI)

26.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005946)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37970 AT4G37970 AT4G37970 AT4G37970
malus_domestica	MD01G1043100.v1.1 MD15G1308500.v1.1 MD15G1308700.v1.1
prunus_persica	Prupe.6G208100_v2.0.a1 Prupe.6G208200_v2.0.a1 Prupe.6G208300_v2.0.a1
pyrus_communis	pycom01g07030 pycom15g27280
rosa_chinensis	RchiOBHm_Chr2g0110451 RchiOBHm_Chr2g0110461
rosa_laevigata	RLG00000017807
rosa_multiflora	Rmu_sc0000389.1_g000001 Rmu_sc0001393.1_g000001 Rmu_sc0020342.1_g000011 Rmu_sc0027350.1_g000001 Rmu_sc0038245.1_g000001
rosa_roxburghii	Rroxscaffold_2G00133390
rosa_rugosa	Rorug02G0167900 Rorug02G0168000
rosa_samantha	Rh2BG229100 Rh2CG221300 Rh2CG221400
rosa_wichuraiana	Rw2G016950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	10, 377
AciI	CCGC	3 cut(s)	124, 582, 899
AclWI	GGATC	2 cut(s)	515, 726
AcsI	RAATTY	1 cut(s)	605
AcyI	GRCGYC	1 cut(s)	378
AfaI	GTAC	2 cut(s)	453, 646
AfiI	CCNNNNNNNGG	2 cut(s)	715, 797
AgsI	TTSAA	5 cut(s)	344, 529, 676, 808, 1003
AjiI	CACGTC	1 cut(s)	121
AjnI	CCWGG	3 cut(s)	211, 550, 714
AjuI	GAANNNNNNNTTGG	2 cut(s)	995, 1027
AluBI	AGCT	5 cut(s)	327, 671, 823, 859, 982
AluI	AGCT	5 cut(s)	327, 671, 823, 859, 982
Alw21I	GWGCWC	1 cut(s)	841
Alw26I	GTCTC	1 cut(s)	51
Alw44I	GTGCAC	1 cut(s)	837
AlwI	GGATC	2 cut(s)	515, 726
AlwNI	CAGNNNCTG	1 cut(s)	770
Ama87I	CYCGRG	1 cut(s)	620
AoxI	GGCC	3 cut(s)	574, 615, 799
ApaLI	GTGCAC	1 cut(s)	837
ApeKI	GCWGC	6 cut(s)	50, 327, 731, 859, 950, 1076
ApoI	RAATTY	1 cut(s)	605
AseI	ATTAAT	1 cut(s)	875
AspLEI	GCGC	1 cut(s)	380
AspS9I	GGNCC	1 cut(s)	616
AsuHPI	GGTGA	4 cut(s)	122, 242, 268, 643
AvaI	CYCGRG	1 cut(s)	620
BaeGI	GKGCMC	3 cut(s)	219, 743, 841
BanI	GGYRCC	2 cut(s)	10, 377
BanII	GRGCYC	1 cut(s)	490
BauI	CACGAG	1 cut(s)	218
Bbv12I	GWGCWC	1 cut(s)	841
BbvI	GCAGC	6 cut(s)	37, 314, 718, 846, 962, 1063
BccI	CCATC	2 cut(s)	292, 743
BceAI	ACGGC	1 cut(s)	391
BciT130I	CCWGG	3 cut(s)	213, 552, 716
BcoDI	GTCTC	1 cut(s)	51
BfaI	CTAG	2 cut(s)	654, 854
BfmI	CTRYAG	3 cut(s)	204, 517, 969
BfoI	RGCGCY	1 cut(s)	381
BglI	GCCNNNNNGGC	1 cut(s)	623
BisI	GCNGC	6 cut(s)	51, 328, 732, 860, 951, 1077
BlsI	GCNGC	6 cut(s)	52, 329, 733, 861, 952, 1078
Bme1390I	CCNGG	3 cut(s)	213, 552, 716
BmeT110I	CYCGRG	1 cut(s)	620
BmgBI	CACGTC	1 cut(s)	121
BmgT120I	GGNCC	1 cut(s)	616
BmiI	GGNNCC	3 cut(s)	12, 379, 489
BmrFI	CCNGG	3 cut(s)	213, 552, 716
BmsI	GCATC	5 cut(s)	82, 180, 469, 762, 787
BplI	GAGNNNNNCTC	2 cut(s)	971, 1003
BpmI	CTGGAG	1 cut(s)	79
BsaHI	GRCGYC	1 cut(s)	378
BsaJI	CCNNGG	6 cut(s)	212, 551, 577, 612, 619, 735
BsaWI	WCCGGW	1 cut(s)	841
BsaXI	ACNNNNNCTCC	2 cut(s)	267, 297
Bsc4I	CCNNNNNNNGG	2 cut(s)	715, 797
Bse1I	ACTGG	2 cut(s)	435, 480
BseBI	CCWGG	3 cut(s)	213, 552, 716
BseDI	CCNNGG	6 cut(s)	212, 551, 577, 612, 619, 735
BseGI	GGATG	3 cut(s)	25, 484, 778
BseLI	CCNNNNNNNGG	2 cut(s)	715, 797
BseMII	CTCAG	3 cut(s)	432, 453, 944
BseNI	ACTGG	2 cut(s)	435, 480
BseRI	GAGGAG	1 cut(s)	480
BseSI	GKGCMC	3 cut(s)	219, 743, 841
BseXI	GCAGC	6 cut(s)	37, 314, 718, 846, 962, 1063
BseYI	CCCAGC	3 cut(s)	45, 482, 503
BshFI	GGCC	3 cut(s)	576, 617, 801
BshNI	GGYRCC	2 cut(s)	10, 377
BsiHKAI	GWGCWC	1 cut(s)	841
BsiHKCI	CYCGRG	1 cut(s)	620
BsiSI	CCGG	1 cut(s)	842
BslI	CCNNNNNNNGG	2 cut(s)	715, 797
BsmAI	GTCTC	1 cut(s)	51
BsnI	GGCC	3 cut(s)	576, 617, 801
BsoBI	CYCGRG	1 cut(s)	620
Bsp1286I	GDGCHC	4 cut(s)	219, 490, 743, 841
Bsp143I	GATC	2 cut(s)	507, 718
Bsp19I	CCATGG	1 cut(s)	735
BspACI	CCGC	3 cut(s)	124, 582, 899
BspANI	GGCC	3 cut(s)	576, 617, 801
BspCNI	CTCAG	3 cut(s)	431, 454, 943
BspLI	GGNNCC	3 cut(s)	12, 379, 489
BspMAI	CTGCAG	1 cut(s)	973
BspPI	GGATC	2 cut(s)	515, 726
BspT107I	GGYRCC	2 cut(s)	10, 377
BsrI	ACTGG	2 cut(s)	435, 480
BssECI	CCNNGG	6 cut(s)	212, 551, 577, 612, 619, 735
BssMI	GATC	2 cut(s)	507, 718
BssNI	GRCGYC	1 cut(s)	378
BssSI	CACGAG	1 cut(s)	218
BssT1I	CCWWGG	3 cut(s)	577, 612, 735
Bst2BI	CACGAG	1 cut(s)	218
Bst2UI	CCWGG	3 cut(s)	213, 552, 716
Bst4CI	ACNGT	3 cut(s)	514, 637, 766
BstACI	GRCGYC	1 cut(s)	378
BstC8I	GCNNGC	2 cut(s)	584, 729
BstDEI	CTNAG	3 cut(s)	418, 462, 930
BstDSI	CCRYGG	1 cut(s)	735
BstF5I	GGATG	3 cut(s)	25, 484, 778
BstH2I	RGCGCY	1 cut(s)	381
BstHHI	GCGC	1 cut(s)	380
BstKTI	GATC	2 cut(s)	510, 721
BstMAI	GTCTC	1 cut(s)	51
BstMBI	GATC	2 cut(s)	507, 718
BstMWI	GCNNNNNNNGC	4 cut(s)	327, 573, 623, 856
BstNI	CCWGG	3 cut(s)	213, 552, 716
BstNSI	RCATGY	2 cut(s)	472, 563
BstSCI	CCNGG	3 cut(s)	211, 550, 714
BstSFI	CTRYAG	3 cut(s)	204, 517, 969
BstSLI	GKGCMC	3 cut(s)	219, 743, 841
BstV1I	GCAGC	6 cut(s)	37, 314, 718, 846, 962, 1063
BsuRI	GGCC	3 cut(s)	576, 617, 801
BtgI	CCRYGG	1 cut(s)	735
BtrI	CACGTC	1 cut(s)	121
BtsCI	GGATG	3 cut(s)	25, 484, 778
BtsIMutI	CAGTG	2 cut(s)	442, 473
Cac8I	GCNNGC	2 cut(s)	584, 729
CaiI	CAGNNNCTG	1 cut(s)	770
CfoI	GCGC	1 cut(s)	380
Cfr13I	GGNCC	1 cut(s)	616
Csp6I	GTAC	2 cut(s)	452, 645
CviAII	CATG	6 cut(s)	318, 469, 560, 593, 736, 815
CviQI	GTAC	2 cut(s)	452, 645
DdeI	CTNAG	3 cut(s)	418, 462, 930
DinI	GGCGCC	1 cut(s)	379
DpnI	GATC	2 cut(s)	509, 720
DpnII	GATC	2 cut(s)	507, 718
Eco130I	CCWWGG	3 cut(s)	577, 612, 735
Eco147I	AGGCCT	1 cut(s)	576
Eco24I	GRGCYC	1 cut(s)	490
Eco88I	CYCGRG	1 cut(s)	620
EcoO109I	RGGNCCY	1 cut(s)	616
EcoRII	CCWGG	3 cut(s)	211, 550, 714
EcoT14I	CCWWGG	3 cut(s)	577, 612, 735
EcoT38I	GRGCYC	1 cut(s)	490
EgeI	GGCGCC	1 cut(s)	379
EheI	GGCGCC	1 cut(s)	379
ErhI	CCWWGG	3 cut(s)	577, 612, 735
FaeI	CATG	6 cut(s)	321, 472, 563, 596, 739, 818
FatI	CATG	6 cut(s)	317, 468, 559, 592, 735, 814
FauI	CCCGC	2 cut(s)	575, 892
FauNDI	CATATG	1 cut(s)	149
Fnu4HI	GCNGC	6 cut(s)	51, 328, 732, 860, 951, 1077
FokI	GGATG	3 cut(s)	12, 491, 765
FriOI	GRGCYC	1 cut(s)	490
Fsp4HI	GCNGC	6 cut(s)	51, 328, 732, 860, 951, 1077
FspBI	CTAG	2 cut(s)	654, 854
GlaI	GCGC	1 cut(s)	379
GluI	GCNGC	6 cut(s)	51, 328, 732, 860, 951, 1077
GsaI	CCCAGC	3 cut(s)	49, 486, 507
GsuI	CTGGAG	1 cut(s)	79
HaeII	RGCGCY	1 cut(s)	381
HaeIII	GGCC	3 cut(s)	576, 617, 801
HapII	CCGG	1 cut(s)	842
HhaI	GCGC	1 cut(s)	380
Hin1I	GRCGYC	1 cut(s)	378
Hin1II	CATG	6 cut(s)	321, 472, 563, 596, 739, 818
Hin6I	GCGC	1 cut(s)	378
HinP1I	GCGC	1 cut(s)	378
HindIII	AAGCTT	2 cut(s)	669, 821
HinfI	GANTC	1 cut(s)	314
HpaII	CCGG	1 cut(s)	842
HphI	GGTGA	4 cut(s)	122, 242, 268, 643
Hpy166II	GTNNAC	1 cut(s)	839
Hpy188I	TCNGA	2 cut(s)	160, 421
Hpy188III	TCNNGA	3 cut(s)	96, 175, 932
Hpy8I	GTNNAC	1 cut(s)	839
Hpy99I	CGWCG	2 cut(s)	395, 1037
HpyAV	CCTTC	3 cut(s)	93, 173, 879
HpyCH4III	ACNGT	3 cut(s)	514, 637, 766
HpyCH4IV	ACGT	3 cut(s)	120, 454, 1035
HpyCH4V	TGCA	5 cut(s)	330, 727, 778, 839, 971
HpyF10VI	GCNNNNNNNGC	4 cut(s)	327, 573, 623, 856
HpyF3I	CTNAG	3 cut(s)	418, 462, 930
HpySE526I	ACGT	3 cut(s)	120, 454, 1035
Hsp92I	GRCGYC	1 cut(s)	378
Hsp92II	CATG	6 cut(s)	321, 472, 563, 596, 739, 818
HspAI	GCGC	1 cut(s)	378
KasI	GGCGCC	1 cut(s)	377
Kzo9I	GATC	2 cut(s)	507, 718
LmnI	GCTCC	1 cut(s)	493
Lsp1109I	GCAGC	6 cut(s)	37, 314, 718, 846, 962, 1063
LweI	GCATC	5 cut(s)	82, 180, 469, 762, 787
MaeI	CTAG	2 cut(s)	654, 854
MaeII	ACGT	3 cut(s)	120, 454, 1035
MaeIII	GTNAC	5 cut(s)	235, 443, 631, 710, 810
MalI	GATC	2 cut(s)	509, 720
MboI	GATC	2 cut(s)	507, 718
MboII	GAAGA	2 cut(s)	271, 901
MfeI	CAATTG	1 cut(s)	722
MhlI	GDGCHC	4 cut(s)	219, 490, 743, 841
MluCI	AATT	5 cut(s)	346, 605, 722, 909, 975
Mly113I	GGCGCC	1 cut(s)	378
MmeI	TCCRAC	1 cut(s)	577
MnlI	CCTC	6 cut(s)	109, 404, 501, 629, 658, 908
MseI	TTAA	5 cut(s)	33, 87, 129, 875, 921
MslI	CAYNNNNRTG	1 cut(s)	684
MspI	CCGG	1 cut(s)	842
MspR9I	CCNGG	3 cut(s)	213, 552, 716
MunI	CAATTG	1 cut(s)	722
MvaI	CCWGG	3 cut(s)	213, 552, 716
MwoI	GCNNNNNNNGC	4 cut(s)	327, 573, 623, 856
NarI	GGCGCC	1 cut(s)	378
NcoI	CCATGG	1 cut(s)	735
NdeI	CATATG	1 cut(s)	149
NdeII	GATC	2 cut(s)	507, 718
NlaIII	CATG	6 cut(s)	321, 472, 563, 596, 739, 818
NlaIV	GGNNCC	3 cut(s)	12, 379, 489
NmuCI	GTSAC	4 cut(s)	235, 631, 710, 810
NspI	RCATGY	2 cut(s)	472, 563
PceI	AGGCCT	1 cut(s)	576
PfeI	GAWTC	1 cut(s)	314
PkrI	GCNGC	6 cut(s)	52, 329, 733, 861, 952, 1078
PluTI	GGCGCC	1 cut(s)	381
PshBI	ATTAAT	1 cut(s)	875
Psp6I	CCWGG	3 cut(s)	211, 550, 714
PspFI	CCCAGC	3 cut(s)	45, 482, 503
PspGI	CCWGG	3 cut(s)	211, 550, 714
PspN4I	GGNNCC	3 cut(s)	12, 379, 489
PspPI	GGNCC	1 cut(s)	616
PstI	CTGCAG	1 cut(s)	973
PstNI	CAGNNNCTG	1 cut(s)	770
RsaI	GTAC	2 cut(s)	453, 646
RsaNI	GTAC	2 cut(s)	452, 645
RseI	CAYNNNNRTG	1 cut(s)	684
SaqAI	TTAA	5 cut(s)	33, 87, 129, 875, 921
SatI	GCNGC	6 cut(s)	51, 328, 732, 860, 951, 1077
Sau3AI	GATC	2 cut(s)	507, 718
Sau96I	GGNCC	1 cut(s)	616
ScrFI	CCNGG	3 cut(s)	213, 552, 716
SduI	GDGCHC	4 cut(s)	219, 490, 743, 841
SfaNI	GCATC	5 cut(s)	82, 180, 469, 762, 787
SfcI	CTRYAG	3 cut(s)	204, 517, 969
SfoI	GGCGCC	1 cut(s)	379
SmiMI	CAYNNNNRTG	1 cut(s)	684
Sse9I	AATT	5 cut(s)	346, 605, 722, 909, 975
SseBI	AGGCCT	1 cut(s)	576
SsiI	CCGC	3 cut(s)	124, 582, 899
SspDI	GGCGCC	1 cut(s)	377
SspI	AATATT	1 cut(s)	533
SspMI	CTAG	2 cut(s)	654, 854
StuI	AGGCCT	1 cut(s)	576
StyD4I	CCNGG	3 cut(s)	211, 550, 714
StyI	CCWWGG	3 cut(s)	577, 612, 735
TaaI	ACNGT	3 cut(s)	514, 637, 766
TaiI	ACGT	3 cut(s)	123, 457, 1038
TasI	AATT	5 cut(s)	346, 605, 722, 909, 975
TfiI	GAWTC	1 cut(s)	314
Tru1I	TTAA	5 cut(s)	33, 87, 129, 875, 921
Tru9I	TTAA	5 cut(s)	33, 87, 129, 875, 921
TscAI	CASTG	2 cut(s)	442, 480
TseFI	GTSAC	4 cut(s)	235, 631, 710, 810
TseI	GCWGC	6 cut(s)	50, 327, 731, 859, 950, 1076
Tsp45I	GTSAC	4 cut(s)	235, 631, 710, 810
TspDTI	ATGAA	2 cut(s)	306, 681
TspGWI	ACGGA	2 cut(s)	408, 698
TspRI	CASTG	2 cut(s)	442, 480
VneI	GTGCAC	1 cut(s)	837
VspI	ATTAAT	1 cut(s)	875
XapI	RAATTY	1 cut(s)	605
XceI	RCATGY	2 cut(s)	472, 563
XspI	CTAG	2 cut(s)	654, 854

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.