Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0038245.1

Orthogroup ID

OG0005946

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 654

Gene Structure 654 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0038245.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 206 bp

atgacaccggaaacagagcaccctgtgaaggcctttggctgggctgctagagactcatctgggcatctctctcccttaaacttctccagaagagaaacaggtgatgaagacgtgaggtttaaggtgctgtactgtgggatatgccacactgaacttagcaacctcaagaatgaatggggattatcaaagtaccctatagttccagg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009987 GO:0019438 GO:0019748 GO:0044237 GO:0044249 GO:0044550 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

69

Amino Acids

7.78

Weight (kDa)

6.25

Isoelectric Point (pI)

37.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005946)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37970 AT4G37970 AT4G37970 AT4G37970
malus_domestica	MD01G1043100.v1.1 MD15G1308500.v1.1 MD15G1308700.v1.1
prunus_persica	Prupe.6G208100_v2.0.a1 Prupe.6G208200_v2.0.a1 Prupe.6G208300_v2.0.a1
pyrus_communis	pycom01g07030 pycom15g27280
rosa_chinensis	RchiOBHm_Chr2g0110451 RchiOBHm_Chr2g0110461
rosa_laevigata	RLG00000017807
rosa_multiflora	Rmu_sc0000389.1_g000001 Rmu_sc0001393.1_g000001 Rmu_sc0020342.1_g000011 Rmu_sc0027350.1_g000001 Rmu_sc0038245.1_g000001
rosa_roxburghii	Rroxscaffold_2G00133390
rosa_rugosa	Rorug02G0167900 Rorug02G0168000
rosa_samantha	Rh2BG229100 Rh2CG221300 Rh2CG221400
rosa_wichuraiana	Rw2G016950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AdeI	CACNNNGTG	1 cut(s)	25
AfaI	GTAC	2 cut(s)	131, 191
AfiI	CCNNNNNNNGG	2 cut(s)	28, 39
AjiI	CACGTC	1 cut(s)	112
Alw21I	GWGCWC	1 cut(s)	21
Alw26I	GTCTC	1 cut(s)	45
AoxI	GGCC	1 cut(s)	30
ApeKI	GCWGC	1 cut(s)	44
AsuHPI	GGTGA	1 cut(s)	113
BbsI	GAAGAC	1 cut(s)	114
Bbv12I	GWGCWC	1 cut(s)	21
BbvI	GCAGC	1 cut(s)	31
BciT130I	CCWGG	1 cut(s)	204
BcoDI	GTCTC	1 cut(s)	45
BfaI	CTAG	1 cut(s)	48
BfmI	CTRYAG	1 cut(s)	195
BisI	GCNGC	1 cut(s)	45
BlsI	GCNGC	1 cut(s)	46
Bme1390I	CCNGG	1 cut(s)	204
BmgBI	CACGTC	1 cut(s)	112
BmrFI	CCNGG	1 cut(s)	204
BmsI	GCATC	1 cut(s)	73
BpiI	GAAGAC	1 cut(s)	114
BpmI	CTGGAG	1 cut(s)	70
BpuEI	CTTGAG	1 cut(s)	149
BsaWI	WCCGGW	1 cut(s)	7
Bsc4I	CCNNNNNNNGG	2 cut(s)	28, 39
BseBI	CCWGG	1 cut(s)	204
BseLI	CCNNNNNNNGG	2 cut(s)	28, 39
BseXI	GCAGC	1 cut(s)	31
BseYI	CCCAGC	1 cut(s)	39
BshFI	GGCC	1 cut(s)	32
BsiHKAI	GWGCWC	1 cut(s)	21
BsiSI	CCGG	1 cut(s)	8
BslI	CCNNNNNNNGG	2 cut(s)	28, 39
BsmAI	GTCTC	1 cut(s)	45
BsnI	GGCC	1 cut(s)	32
Bsp1286I	GDGCHC	1 cut(s)	21
BspANI	GGCC	1 cut(s)	32
Bst2UI	CCWGG	1 cut(s)	204
Bst4CI	ACNGT	1 cut(s)	134
Bst6I	CTCTTC	1 cut(s)	85
BstDEI	CTNAG	1 cut(s)	155
BstMAI	GTCTC	1 cut(s)	45
BstNI	CCWGG	1 cut(s)	204
BstSFI	CTRYAG	1 cut(s)	195
BstV1I	GCAGC	1 cut(s)	31
BstV2I	GAAGAC	1 cut(s)	114
BsuRI	GGCC	1 cut(s)	32
BtrI	CACGTC	1 cut(s)	112
BtsIMutI	CAGTG	1 cut(s)	147
Csp6I	GTAC	2 cut(s)	130, 190
CviJI	RGCY	3 cut(s)	32, 39, 44
CviKI_1	RGCY	3 cut(s)	32, 39, 44
CviQI	GTAC	2 cut(s)	130, 190
DdeI	CTNAG	1 cut(s)	155
DraIII	CACNNNGTG	1 cut(s)	25
Eam1104I	CTCTTC	1 cut(s)	85
EarI	CTCTTC	1 cut(s)	85
Eco147I	AGGCCT	1 cut(s)	32
FaiI	YATR	2 cut(s)	142, 197
Fnu4HI	GCNGC	1 cut(s)	45
Fsp4HI	GCNGC	1 cut(s)	45
FspBI	CTAG	1 cut(s)	48
GluI	GCNGC	1 cut(s)	45
GsaI	CCCAGC	1 cut(s)	43
GsuI	CTGGAG	1 cut(s)	70
HaeIII	GGCC	1 cut(s)	32
HapII	CCGG	1 cut(s)	8
HinfI	GANTC	1 cut(s)	53
HpaII	CCGG	1 cut(s)	8
HphI	GGTGA	1 cut(s)	113
Hpy188III	TCNNGA	2 cut(s)	87, 166
HpyAV	CCTTC	1 cut(s)	22
HpyCH4III	ACNGT	1 cut(s)	134
HpyCH4IV	ACGT	1 cut(s)	111
HpyF3I	CTNAG	1 cut(s)	155
HpySE526I	ACGT	1 cut(s)	111
LpnPI	CCDG	7 cut(s)	21, 25, 36, 45, 84, 100, 189
Lsp1109I	GCAGC	1 cut(s)	31
LweI	GCATC	1 cut(s)	73
MaeI	CTAG	1 cut(s)	48
MaeII	ACGT	1 cut(s)	111
MboII	GAAGA	2 cut(s)	102, 119
MhlI	GDGCHC	1 cut(s)	21
MlyI	GAGTC	1 cut(s)	47
MnlI	CCTC	2 cut(s)	108, 173
MseI	TTAA	2 cut(s)	77, 120
MspI	CCGG	1 cut(s)	8
MspR9I	CCNGG	1 cut(s)	204
MvaI	CCWGG	1 cut(s)	204
PceI	AGGCCT	1 cut(s)	32
PkrI	GCNGC	1 cut(s)	46
PleI	GAGTC	1 cut(s)	47
PpsI	GAGTC	1 cut(s)	47
PspFI	CCCAGC	1 cut(s)	39
RsaI	GTAC	2 cut(s)	131, 191
RsaNI	GTAC	2 cut(s)	130, 190
SaqAI	TTAA	2 cut(s)	77, 120
SatI	GCNGC	1 cut(s)	45
SchI	GAGTC	1 cut(s)	47
ScrFI	CCNGG	1 cut(s)	204
SduI	GDGCHC	1 cut(s)	21
SetI	ASST	5 cut(s)	103, 114, 119, 126, 165
SfaNI	GCATC	1 cut(s)	73
SfcI	CTRYAG	1 cut(s)	195
SgeI	CNNG	9 cut(s)	20, 35, 52, 60, 72, 99, 111, 124, 178
SmlI	CTYRAG	1 cut(s)	164
SmoI	CTYRAG	1 cut(s)	164
SseBI	AGGCCT	1 cut(s)	32
SspMI	CTAG	1 cut(s)	48
StuI	AGGCCT	1 cut(s)	32
TaaI	ACNGT	1 cut(s)	134
TaiI	ACGT	1 cut(s)	114
TatI	WGTACW	1 cut(s)	129
Tru1I	TTAA	2 cut(s)	77, 120
Tru9I	TTAA	2 cut(s)	77, 120
TscAI	CASTG	1 cut(s)	154
TseI	GCWGC	1 cut(s)	44
TspDTI	ATGAA	2 cut(s)	120, 186
TspRI	CASTG	1 cut(s)	154
XspI	CTAG	1 cut(s)	48

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.