MD15G1308500.v1.1

Alcohol dehydrogenase GroES-like domain

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
Physical Location & Seq
Forward (+)
30895603 .. 30895968
366 bp
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UTR
Exon/CDS
Intron
MD15G1308500.v1.1.491

Sequence Viewer

Length: 240 bp
ATGGAAAAGGCTCTAGAACAAGAACATCCTGTGAAGGCATTTGGTTGGGCTGCCAGAGACGCATCTGGCTACCTCTCTCCCTTTAGCTTCTCAAGAAGACCAAGAGGTGATGAGGACGTGAGGTTTAAGGTGTTGTATTGTGGGATGTGCCACACTGATCTTCATAACATCAAGAATGAATGGGGGATCTCTATGTACCCTATGGTTCCTGGGTACGTACGTCTGTGTATATATATATAA

Protein Analysis

80

Amino Acids

9.19

Weight (kDa)

7.74

Isoelectric Point (pI)

42.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 194
AfaI GTAC 3 cut(s) 197, 215, 219
AjiI CACGTC 1 cut(s) 118
AjnI CCWGG 1 cut(s) 208
AluBI AGCT 1 cut(s) 87
AluI AGCT 1 cut(s) 87
Alw26I GTCTC 1 cut(s) 51
AlwI GGATC 1 cut(s) 194
ApeKI GCWGC 1 cut(s) 50
AsuHPI GGTGA 1 cut(s) 119
BaeI ACNNNNGTAYC 2 cut(s) 205, 238
BbsI GAAGAC 1 cut(s) 103
BbvI GCAGC 1 cut(s) 37
BciT130I CCWGG 1 cut(s) 210
BcoDI GTCTC 1 cut(s) 51
BfaI CTAG 1 cut(s) 14
BisI GCNGC 1 cut(s) 51
BlsI GCNGC 1 cut(s) 52
Bme1390I CCNGG 1 cut(s) 210
BmgBI CACGTC 1 cut(s) 118
BmiI GGNNCC 1 cut(s) 207
BmrFI CCNGG 1 cut(s) 210
BmsI GCATC 1 cut(s) 71
BpiI GAAGAC 1 cut(s) 103
BpuEI CTTGAG 1 cut(s) 76
BsaAI YACGTR 1 cut(s) 217
BsaJI CCNNGG 1 cut(s) 209
BseBI CCWGG 1 cut(s) 210
BseDI CCNNGG 1 cut(s) 209
BseGI GGATG 2 cut(s) 25, 150
BseXI GCAGC 1 cut(s) 37
BsiWI CGTACG 1 cut(s) 217
BsmAI GTCTC 1 cut(s) 51
BsmBI CGTCTC 1 cut(s) 51
Bsp143I GATC 2 cut(s) 157, 186
BspLI GGNNCC 1 cut(s) 207
BspPI GGATC 1 cut(s) 194
BssECI CCNNGG 1 cut(s) 209
BssMI GATC 2 cut(s) 157, 186
Bst2UI CCWGG 1 cut(s) 210
BstBAI YACGTR 1 cut(s) 217
BstF5I GGATG 2 cut(s) 25, 150
BstKTI GATC 2 cut(s) 160, 189
BstMAI GTCTC 1 cut(s) 51
BstMBI GATC 2 cut(s) 157, 186
BstMWI GCNNNNNNNGC 1 cut(s) 59
BstNI CCWGG 1 cut(s) 210
BstSCI CCNGG 1 cut(s) 208
BstSNI TACGTA 1 cut(s) 217
BstV1I GCAGC 1 cut(s) 37
BstV2I GAAGAC 1 cut(s) 103
BstX2I RGATCY 1 cut(s) 186
BstYI RGATCY 1 cut(s) 186
BtrI CACGTC 1 cut(s) 118
BtsCI GGATG 2 cut(s) 25, 150
BtsIMutI CAGTG 1 cut(s) 153
CseI GACGC 1 cut(s) 68
Csp6I GTAC 3 cut(s) 196, 214, 218
CviJI RGCY 4 cut(s) 11, 50, 69, 87
CviKI_1 RGCY 4 cut(s) 11, 50, 69, 87
CviQI GTAC 3 cut(s) 196, 214, 218
DpnI GATC 2 cut(s) 159, 188
DpnII GATC 2 cut(s) 157, 186
Eco105I TACGTA 1 cut(s) 217
EcoRII CCWGG 1 cut(s) 208
Esp3I CGTCTC 1 cut(s) 51
FaiI YATR 8 cut(s) 165, 194, 203, 230, 232, 234, 236, 238
Fnu4HI GCNGC 1 cut(s) 51
FokI GGATG 2 cut(s) 12, 157
Fsp4HI GCNGC 1 cut(s) 51
FspBI CTAG 1 cut(s) 14
GluI GCNGC 1 cut(s) 51
HgaI GACGC 1 cut(s) 68
HphI GGTGA 1 cut(s) 119
Hpy188III TCNNGA 3 cut(s) 14, 93, 172
HpyAV CCTTC 1 cut(s) 28
HpyCH4IV ACGT 3 cut(s) 117, 216, 220
HpyF10VI GCNNNNNNNGC 1 cut(s) 59
HpySE526I ACGT 3 cut(s) 117, 216, 220
Kzo9I GATC 2 cut(s) 157, 186
LpnPI CCDG 5 cut(s) 42, 51, 67, 195, 222
Lsp1109I GCAGC 1 cut(s) 37
LweI GCATC 1 cut(s) 71
MaeI CTAG 1 cut(s) 14
MaeII ACGT 3 cut(s) 117, 216, 220
MalI GATC 2 cut(s) 159, 188
MboI GATC 2 cut(s) 157, 186
MboII GAAGA 2 cut(s) 108, 152
MflI RGATCY 1 cut(s) 186
MnlI CCTC 4 cut(s) 83, 98, 106, 114
MseI TTAA 1 cut(s) 126
MspR9I CCNGG 1 cut(s) 210
MvaI CCWGG 1 cut(s) 210
MwoI GCNNNNNNNGC 1 cut(s) 59
NdeII GATC 2 cut(s) 157, 186
NlaIV GGNNCC 1 cut(s) 207
Pfl23II CGTACG 1 cut(s) 217
PkrI GCNGC 1 cut(s) 52
Ppu21I YACGTR 1 cut(s) 217
Psp6I CCWGG 1 cut(s) 208
PspGI CCWGG 1 cut(s) 208
PspLI CGTACG 1 cut(s) 217
PspN4I GGNNCC 1 cut(s) 207
PsuI RGATCY 1 cut(s) 186
RsaI GTAC 3 cut(s) 197, 215, 219
RsaNI GTAC 3 cut(s) 196, 214, 218
SaqAI TTAA 1 cut(s) 126
SatI GCNGC 1 cut(s) 51
Sau3AI GATC 2 cut(s) 157, 186
ScrFI CCNGG 1 cut(s) 210
SetI ASST 8 cut(s) 75, 89, 109, 120, 125, 132, 219, 223
SfaNI GCATC 1 cut(s) 71
SmlI CTYRAG 1 cut(s) 91
SmoI CTYRAG 1 cut(s) 91
SnaBI TACGTA 1 cut(s) 217
SspMI CTAG 1 cut(s) 14
StyD4I CCNGG 1 cut(s) 208
TaiI ACGT 3 cut(s) 120, 219, 223
Tru1I TTAA 1 cut(s) 126
Tru9I TTAA 1 cut(s) 126
TscAI CASTG 1 cut(s) 160
TseI GCWGC 1 cut(s) 50
TspDTI ATGAA 2 cut(s) 152, 192
TspRI CASTG 1 cut(s) 160
XbaI TCTAGA 1 cut(s) 13
XspI CTAG 1 cut(s) 14
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.