Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0005946

Physical Location & Seq

Genomic Coordinates Forward (+)

22598343 .. 22599239

Gene Structure 897 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g27280.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGGTCGCCAATGAGCGCTACATTGTTCGTTTCCCCGAGAACCTGCCACTTGATGCTGGTGCTCCTCTACTATGTGCTGGGATCACAGTGTACAGTCCCCTGAAATATTTTGGCTTATCTGAGCCTGGTAAGCATGTTGGCATTGTAAGCCTTGGCGGGCTTGGTCACACCGGTGTGAAATTCGCTAAGGCGTTCGGGTCAAAAGTGTCTGTGATTAGTACCTCCCCTGGCAAGAAAGATGAAGCTCTGAAGAAACTCGGGGTTGATTCATTCGTGGTTAGCTGCGACCAGGAGCAAATGAAGGCTGCCAGAGGCACATTGGATGGCATCATCGACACAGTCTCAGCTGCGCATCCCATTGTGCCCTTACTTGGTCTTTTGAAGCCCCATGGGAAGCTTATTCTGGTGGGTGTACCAGTAAAGCCACTAAACCTCCATGTGTTTCCTTTAATCACGGGAAGAAAGTCTGTGGCCGGTGGAATCGGAGGCATGAAGGAGACCCAGGAAATGATTGATTTTGCAGCAAAACACAACATAACGGCGGAGGTTGAAGTTATCTCAATGGATTACGTGAACACAGCAATGGAGCGTCTTGCTAAGAATGATGTAAGATACCGATTTGTCATTGATGTTGCAAACACACTGGCTGCTAGCGAAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009987 GO:0019438 GO:0019748 GO:0044237 GO:0044249 GO:0044550 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

221

Amino Acids

23.36

Weight (kDa)

8.79

Isoelectric Point (pI)

19.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005946)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37970 AT4G37970 AT4G37970 AT4G37970
malus_domestica	MD01G1043100.v1.1 MD15G1308500.v1.1 MD15G1308700.v1.1
prunus_persica	Prupe.6G208100_v2.0.a1 Prupe.6G208200_v2.0.a1 Prupe.6G208300_v2.0.a1
pyrus_communis	pycom01g07030 pycom15g27280
rosa_chinensis	RchiOBHm_Chr2g0110451 RchiOBHm_Chr2g0110461
rosa_laevigata	RLG00000017807
rosa_multiflora	Rmu_sc0000389.1_g000001 Rmu_sc0001393.1_g000001 Rmu_sc0020342.1_g000011 Rmu_sc0027350.1_g000001 Rmu_sc0038245.1_g000001
rosa_roxburghii	Rroxscaffold_2G00133390
rosa_rugosa	Rorug02G0167900 Rorug02G0168000
rosa_samantha	Rh2BG229100 Rh2CG221300 Rh2CG221400
rosa_wichuraiana	Rw2G016950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	351
Acc36I	ACCTGC	1 cut(s)	51
AciI	CCGC	2 cut(s)	156, 542
AclWI	GGATC	1 cut(s)	89
AcoI	YGGCCR	1 cut(s)	471
AcsI	RAATTY	1 cut(s)	179
AcuI	CTGAAG	1 cut(s)	269
AfaI	GTAC	3 cut(s)	92, 220, 414
AfeI	AGCGCT	1 cut(s)	17
AfiI	CCNNNNNNNGG	1 cut(s)	371
AgeI	ACCGGT	1 cut(s)	170
AgsI	TTSAA	2 cut(s)	382, 551
AjnI	CCWGG	4 cut(s)	124, 226, 288, 501
AleI	CACNNNNGTG	2 cut(s)	171, 173
AluBI	AGCT	5 cut(s)	245, 282, 347, 397, 659
AluI	AGCT	5 cut(s)	245, 282, 347, 397, 659
Alw21I	GWGCWC	1 cut(s)	64
Alw26I	GTCTC	2 cut(s)	346, 491
AlwI	GGATC	1 cut(s)	89
Ama87I	CYCGRG	2 cut(s)	35, 257
Aor51HI	AGCGCT	1 cut(s)	17
AoxI	GGCC	1 cut(s)	471
ApeKI	GCWGC	5 cut(s)	282, 305, 347, 521, 647
ApoI	RAATTY	1 cut(s)	179
AsiGI	ACCGGT	1 cut(s)	170
AspLEI	GCGC	2 cut(s)	18, 352
AsuNHI	GCTAGC	1 cut(s)	650
AvaI	CYCGRG	2 cut(s)	35, 257
BaeGI	GKGCMC	1 cut(s)	366
Bbv12I	GWGCWC	1 cut(s)	64
BbvI	GCAGC	5 cut(s)	269, 292, 334, 533, 634
BccI	CCATC	1 cut(s)	317
BceAI	ACGGC	1 cut(s)	555
BciT130I	CCWGG	4 cut(s)	126, 228, 290, 503
BcoDI	GTCTC	2 cut(s)	346, 491
BfaI	CTAG	1 cut(s)	651
BfoI	RGCGCY	1 cut(s)	19
BfuAI	ACCTGC	1 cut(s)	51
BisI	GCNGC	5 cut(s)	283, 306, 348, 522, 648
BlsI	GCNGC	5 cut(s)	284, 307, 349, 523, 649
Bme1390I	CCNGG	4 cut(s)	126, 228, 290, 503
BmeT110I	CYCGRG	2 cut(s)	35, 257
BmrFI	CCNGG	4 cut(s)	126, 228, 290, 503
BmsI	GCATC	3 cut(s)	43, 336, 361
BmtI	GCTAGC	1 cut(s)	654
Bpu10I	CCTNAGC	1 cut(s)	186
BsaAI	YACGTR	1 cut(s)	571
BsaI	GGTCTC	1 cut(s)	491
BsaJI	CCNNGG	4 cut(s)	151, 226, 388, 501
BsaWI	WCCGGW	1 cut(s)	170
BsaXI	ACNNNNNCTCC	2 cut(s)	417, 447
Bsc4I	CCNNNNNNNGG	1 cut(s)	371
Bse118I	RCCGGY	2 cut(s)	170, 473
Bse1I	ACTGG	2 cut(s)	416, 648
Bse3DI	GCAATG	1 cut(s)	588
BseBI	CCWGG	4 cut(s)	126, 228, 290, 503
BseDI	CCNNGG	4 cut(s)	151, 226, 388, 501
BseGI	GGATG	2 cut(s)	328, 352
BseLI	CCNNNNNNNGG	1 cut(s)	371
BseMI	GCAATG	1 cut(s)	588
BseMII	CTCAG	2 cut(s)	111, 357
BseNI	ACTGG	2 cut(s)	416, 648
BseRI	GAGGAG	1 cut(s)	54
BseSI	GKGCMC	1 cut(s)	366
BseXI	GCAGC	5 cut(s)	269, 292, 334, 533, 634
BseYI	CCCAGC	1 cut(s)	77
BshFI	GGCC	1 cut(s)	473
BshTI	ACCGGT	1 cut(s)	170
BsiHKAI	GWGCWC	1 cut(s)	64
BsiHKCI	CYCGRG	2 cut(s)	35, 257
BsiSI	CCGG	2 cut(s)	171, 474
BslFI	GGGAC	1 cut(s)	81
BslI	CCNNNNNNNGG	1 cut(s)	371
BsmAI	GTCTC	2 cut(s)	346, 491
BsmFI	GGGAC	1 cut(s)	81
BsnI	GGCC	1 cut(s)	473
Bso31I	GGTCTC	1 cut(s)	491
BsoBI	CYCGRG	2 cut(s)	35, 257
Bsp1286I	GDGCHC	2 cut(s)	64, 366
Bsp1407I	TGTACA	1 cut(s)	90
Bsp143I	GATC	1 cut(s)	81
Bsp19I	CCATGG	1 cut(s)	388
BspACI	CCGC	2 cut(s)	156, 542
BspANI	GGCC	1 cut(s)	473
BspCNI	CTCAG	2 cut(s)	112, 356
BspMI	ACCTGC	1 cut(s)	51
BspOI	GCTAGC	1 cut(s)	654
BspPI	GGATC	1 cut(s)	89
BspTNI	GGTCTC	1 cut(s)	491
BsrDI	GCAATG	1 cut(s)	588
BsrFI	RCCGGY	2 cut(s)	170, 473
BsrGI	TGTACA	1 cut(s)	90
BsrI	ACTGG	2 cut(s)	416, 648
BssAI	RCCGGY	2 cut(s)	170, 473
BssECI	CCNNGG	4 cut(s)	151, 226, 388, 501
BssMI	GATC	1 cut(s)	81
BssT1I	CCWWGG	2 cut(s)	151, 388
Bst2UI	CCWGG	4 cut(s)	126, 228, 290, 503
Bst4CI	ACNGT	3 cut(s)	88, 95, 340
BstAUI	TGTACA	1 cut(s)	90
BstBAI	YACGTR	1 cut(s)	571
BstC8I	GCNNGC	2 cut(s)	158, 652
BstDEI	CTNAG	4 cut(s)	120, 186, 343, 597
BstDSI	CCRYGG	1 cut(s)	388
BstF5I	GGATG	2 cut(s)	328, 352
BstH2I	RGCGCY	1 cut(s)	19
BstHHI	GCGC	2 cut(s)	18, 352
BstKTI	GATC	1 cut(s)	84
BstMAI	GTCTC	2 cut(s)	346, 491
BstMBI	GATC	1 cut(s)	81
BstMWI	GCNNNNNNNGC	3 cut(s)	130, 147, 656
BstNI	CCWGG	4 cut(s)	126, 228, 290, 503
BstNSI	RCATGY	1 cut(s)	137
BstSCI	CCNGG	4 cut(s)	124, 226, 288, 501
BstSLI	GKGCMC	1 cut(s)	366
BstV1I	GCAGC	5 cut(s)	269, 292, 334, 533, 634
BsuRI	GGCC	1 cut(s)	473
BtgI	CCRYGG	1 cut(s)	388
BtsCI	GGATG	2 cut(s)	328, 352
BtsIMutI	CAGTG	2 cut(s)	93, 641
BveI	ACCTGC	1 cut(s)	51
Cac8I	GCNNGC	2 cut(s)	158, 652
CfoI	GCGC	2 cut(s)	18, 352
Cfr10I	RCCGGY	2 cut(s)	170, 473
CseI	GACGC	1 cut(s)	578
Csp6I	GTAC	3 cut(s)	91, 219, 413
CspAI	ACCGGT	1 cut(s)	170
CviAII	CATG	4 cut(s)	134, 389, 437, 490
CviQI	GTAC	3 cut(s)	91, 219, 413
DdeI	CTNAG	4 cut(s)	120, 186, 343, 597
DpnI	GATC	1 cut(s)	83
DpnII	GATC	1 cut(s)	81
EaeI	YGGCCR	1 cut(s)	471
EciI	GGCGGA	1 cut(s)	557
Eco130I	CCWWGG	2 cut(s)	151, 388
Eco31I	GGTCTC	1 cut(s)	491
Eco47III	AGCGCT	1 cut(s)	17
Eco57I	CTGAAG	1 cut(s)	269
Eco88I	CYCGRG	2 cut(s)	35, 257
EcoRII	CCWGG	4 cut(s)	124, 226, 288, 501
EcoT14I	CCWWGG	2 cut(s)	151, 388
ErhI	CCWWGG	2 cut(s)	151, 388
FaeI	CATG	4 cut(s)	137, 392, 440, 493
FaiI	YATR	6 cut(s)	73, 135, 390, 438, 491, 536
FaqI	GGGAC	1 cut(s)	81
FatI	CATG	4 cut(s)	133, 388, 436, 489
FauI	CCCGC	1 cut(s)	149
Fnu4HI	GCNGC	5 cut(s)	283, 306, 348, 522, 648
FokI	GGATG	2 cut(s)	335, 339
Fsp4HI	GCNGC	5 cut(s)	283, 306, 348, 522, 648
FspBI	CTAG	1 cut(s)	651
FspI	TGCGCA	1 cut(s)	351
GlaI	GCGC	2 cut(s)	17, 351
GluI	GCNGC	5 cut(s)	283, 306, 348, 522, 648
GsaI	CCCAGC	1 cut(s)	81
HaeII	RGCGCY	1 cut(s)	19
HaeIII	GGCC	1 cut(s)	473
HapII	CCGG	2 cut(s)	171, 474
HgaI	GACGC	1 cut(s)	578
HhaI	GCGC	2 cut(s)	18, 352
Hin1II	CATG	4 cut(s)	137, 392, 440, 493
Hin6I	GCGC	2 cut(s)	16, 350
HinP1I	GCGC	2 cut(s)	16, 350
HindIII	AAGCTT	2 cut(s)	395, 657
HinfI	GANTC	2 cut(s)	266, 480
HpaII	CCGG	2 cut(s)	171, 474
Hpy166II	GTNNAC	3 cut(s)	91, 413, 574
Hpy188I	TCNGA	3 cut(s)	121, 249, 485
Hpy8I	GTNNAC	3 cut(s)	91, 413, 574
HpyAV	CCTTC	2 cut(s)	295, 487
HpyCH4III	ACNGT	3 cut(s)	88, 95, 340
HpyCH4IV	ACGT	1 cut(s)	570
HpyCH4V	TGCA	2 cut(s)	521, 635
HpyF10VI	GCNNNNNNNGC	3 cut(s)	130, 147, 656
HpyF3I	CTNAG	4 cut(s)	120, 186, 343, 597
HpySE526I	ACGT	1 cut(s)	570
Hsp92II	CATG	4 cut(s)	137, 392, 440, 493
HspAI	GCGC	2 cut(s)	16, 350
Kzo9I	GATC	1 cut(s)	81
LmnI	GCTCC	3 cut(s)	67, 292, 586
Lsp1109I	GCAGC	5 cut(s)	269, 292, 334, 533, 634
LweI	GCATC	3 cut(s)	43, 336, 361
MaeI	CTAG	1 cut(s)	651
MaeII	ACGT	1 cut(s)	570
MaeIII	GTNAC	1 cut(s)	164
MalI	GATC	1 cut(s)	83
MboI	GATC	1 cut(s)	81
MboII	GAAGA	2 cut(s)	262, 471
MhlI	GDGCHC	2 cut(s)	64, 366
MluCI	AATT	1 cut(s)	179
MnlI	CCTC	6 cut(s)	75, 232, 305, 443, 479, 538
MseI	TTAA	1 cut(s)	449
MslI	CAYNNNNRTG	3 cut(s)	171, 173, 581
MspA1I	CMGCKG	1 cut(s)	347
MspI	CCGG	2 cut(s)	171, 474
MspR9I	CCNGG	4 cut(s)	126, 228, 290, 503
MvaI	CCWGG	4 cut(s)	126, 228, 290, 503
MwoI	GCNNNNNNNGC	3 cut(s)	130, 147, 656
NcoI	CCATGG	1 cut(s)	388
NdeII	GATC	1 cut(s)	81
NheI	GCTAGC	1 cut(s)	650
NlaIII	CATG	4 cut(s)	137, 392, 440, 493
NmuCI	GTSAC	1 cut(s)	164
NsbI	TGCGCA	1 cut(s)	351
NspI	RCATGY	1 cut(s)	137
OliI	CACNNNNGTG	2 cut(s)	171, 173
PfeI	GAWTC	2 cut(s)	266, 480
PflFI	GACNNNGTC	1 cut(s)	338
PinAI	ACCGGT	1 cut(s)	170
PkrI	GCNGC	5 cut(s)	284, 307, 349, 523, 649
Ppu21I	YACGTR	1 cut(s)	571
Psp6I	CCWGG	4 cut(s)	124, 226, 288, 501
PspFI	CCCAGC	1 cut(s)	77
PspGI	CCWGG	4 cut(s)	124, 226, 288, 501
PsyI	GACNNNGTC	1 cut(s)	338
PvuII	CAGCTG	1 cut(s)	347
RsaI	GTAC	3 cut(s)	92, 220, 414
RsaNI	GTAC	3 cut(s)	91, 219, 413
RseI	CAYNNNNRTG	3 cut(s)	171, 173, 581
SaqAI	TTAA	1 cut(s)	449
SatI	GCNGC	5 cut(s)	283, 306, 348, 522, 648
Sau3AI	GATC	1 cut(s)	81
ScrFI	CCNGG	4 cut(s)	126, 228, 290, 503
SduI	GDGCHC	2 cut(s)	64, 366
SfaNI	GCATC	3 cut(s)	43, 336, 361
SgrAI	CRCCGGYG	1 cut(s)	170
SmiMI	CAYNNNNRTG	3 cut(s)	171, 173, 581
Sse9I	AATT	1 cut(s)	179
SsiI	CCGC	2 cut(s)	156, 542
SspI	AATATT	1 cut(s)	107
SspMI	CTAG	1 cut(s)	651
StyD4I	CCNGG	4 cut(s)	124, 226, 288, 501
StyI	CCWWGG	2 cut(s)	151, 388
TaaI	ACNGT	3 cut(s)	88, 95, 340
TaiI	ACGT	1 cut(s)	573
TaqI	TCGA	1 cut(s)	333
TasI	AATT	1 cut(s)	179
TatI	WGTACW	1 cut(s)	90
TfiI	GAWTC	2 cut(s)	266, 480
Tru1I	TTAA	1 cut(s)	449
Tru9I	TTAA	1 cut(s)	449
TscAI	CASTG	2 cut(s)	93, 648
TseFI	GTSAC	1 cut(s)	164
TseI	GCWGC	5 cut(s)	282, 305, 347, 521, 647
Tsp45I	GTSAC	1 cut(s)	164
TspDTI	ATGAA	4 cut(s)	255, 258, 314, 506
TspRI	CASTG	2 cut(s)	93, 648
Tth111I	GACNNNGTC	1 cut(s)	338
XapI	RAATTY	1 cut(s)	179
XceI	RCATGY	1 cut(s)	137
XcmI	CCANNNNNNNNNTGG	1 cut(s)	316
XspI	CTAG	1 cut(s)	651

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.