Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0005946

Physical Location & Seq

Genomic Coordinates Forward (+)

20564749 .. 20565589

Gene Structure 841 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G016950.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGGGCTATGGCAGGCACGAGATAGTGGGAGAAGTAACAGAAGTAGGAAGCAAGGTGAAGAAAGTAAAAGTGGGAGATAAAGTGGGTGTGGGTGGTGTTGTTGGTGCATGCCATGACTGCCGCAAATGTGACAATGACCTTGAAATTTACTGCCCCAAATCGATTTTTACCTACGGTGACATATACCACGATGGAACAGTAACATACGGAGGTTACTCTGATTCAATGGTTTCCAACGAGCGCTACATGATCCATTTTCCGGACAACATGCTGCTAGCCACCGGAGCACCTCTATCCTGTGCTGGGATCACAGTGTATAGTCCCTTGAAGTACTTCGGGTTAGCGGAGCCTGGTATGCATATTGGCATTGTTGGCCTTGGTGGGCTAGGTCATATGGGTGTGAAATTTGCCAAGGCTTTTGGGGCGAAAGTGACTGTGATTAGTTGTACATCCCCTAGCAAGAAAGATGAAGCATTGAAACAATTTGATGCTGATTCGTTCTTGATCAGCCGCAACGACGACGAGATGCAGGCTGCTAAGGGCACATTTGATGGCATCCTTGATACAGTCTCTGCTGTGCATGCCATTTCGCCCTCGATTGACCTTTTGAAGTCCGATGGGAAGCTTATTATGCTGGGAGCACCGTACCAGACAAGCCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009987 GO:0019438 GO:0019748 GO:0044237 GO:0044249 GO:0044550 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

220

Amino Acids

23.42

Weight (kDa)

6.04

Isoelectric Point (pI)

31.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_N	PF08240	6 - 88	1.5e-11	Alcohol dehydrogenase GroES-like domain
ADH_zinc_N	PF00107	128 - 218	5.8e-14	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005946)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37970 AT4G37970 AT4G37970 AT4G37970
malus_domestica	MD01G1043100.v1.1 MD15G1308500.v1.1 MD15G1308700.v1.1
prunus_persica	Prupe.6G208100_v2.0.a1 Prupe.6G208200_v2.0.a1 Prupe.6G208300_v2.0.a1
pyrus_communis	pycom01g07030 pycom15g27280
rosa_chinensis	RchiOBHm_Chr2g0110451 RchiOBHm_Chr2g0110461
rosa_laevigata	RLG00000017807
rosa_multiflora	Rmu_sc0000389.1_g000001 Rmu_sc0001393.1_g000001 Rmu_sc0020342.1_g000011 Rmu_sc0027350.1_g000001 Rmu_sc0038245.1_g000001
rosa_roxburghii	Rroxscaffold_2G00133390
rosa_rugosa	Rorug02G0167900 Rorug02G0168000
rosa_samantha	Rh2BG229100 Rh2CG221300 Rh2CG221400
rosa_wichuraiana	Rw2G016950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	259
AciI	CCGC	3 cut(s)	121, 344, 511
AclWI	GGATC	2 cut(s)	244, 314
AcsI	RAATTY	2 cut(s)	144, 404
AfaI	GTAC	3 cut(s)	332, 448, 647
AfeI	AGCGCT	1 cut(s)	242
AfiI	CCNNNNNNNGG	2 cut(s)	259, 303
AgsI	TTSAA	5 cut(s)	143, 225, 328, 478, 610
AjnI	CCWGG	1 cut(s)	349
AluBI	AGCT	1 cut(s)	625
AluI	AGCT	1 cut(s)	625
Alw21I	GWGCWC	2 cut(s)	289, 643
Alw26I	GTCTC	1 cut(s)	574
AlwI	GGATC	2 cut(s)	244, 314
AlwNI	CAGNNNCTG	1 cut(s)	572
Aor13HI	TCCGGA	1 cut(s)	259
Aor51HI	AGCGCT	1 cut(s)	242
AoxI	GGCC	1 cut(s)	373
ApeKI	GCWGC	2 cut(s)	271, 533
ApoI	RAATTY	2 cut(s)	144, 404
Asp700I	GAANNNNTTC	1 cut(s)	332
AspLEI	GCGC	1 cut(s)	243
AsuHPI	GGTGA	2 cut(s)	67, 188
AsuNHI	GCTAGC	1 cut(s)	274
BaeGI	GKGCMC	1 cut(s)	545
BauI	CACGAG	1 cut(s)	17
Bbv12I	GWGCWC	2 cut(s)	289, 643
BbvI	GCAGC	2 cut(s)	258, 520
BccI	CCATC	3 cut(s)	185, 545, 611
BciT130I	CCWGG	1 cut(s)	351
BclI	TGATCA	1 cut(s)	504
BcoDI	GTCTC	1 cut(s)	574
BfaI	CTAG	4 cut(s)	275, 386, 456, 661
BfoI	RGCGCY	1 cut(s)	244
BisI	GCNGC	4 cut(s)	121, 272, 511, 534
BlsI	GCNGC	4 cut(s)	122, 273, 512, 535
BmcAI	AGTACT	1 cut(s)	332
Bme1390I	CCNGG	1 cut(s)	351
BmiI	GGNNCC	1 cut(s)	348
BmrFI	CCNGG	1 cut(s)	351
BmsI	GCATC	3 cut(s)	478, 516, 564
BmtI	GCTAGC	1 cut(s)	278
Bpu10I	CCTNAGC	1 cut(s)	537
Bsa29I	ATCGAT	1 cut(s)	161
BsaJI	CCNNGG	2 cut(s)	376, 411
BsaWI	WCCGGW	2 cut(s)	259, 281
BsaXI	ACNNNNNCTCC	2 cut(s)	66, 96
Bsc4I	CCNNNNNNNGG	2 cut(s)	259, 303
BseAI	TCCGGA	1 cut(s)	259
BseBI	CCWGG	1 cut(s)	351
BseCI	ATCGAT	1 cut(s)	161
BseDI	CCNNGG	2 cut(s)	376, 411
BseGI	GGATG	2 cut(s)	449, 555
BseLI	CCNNNNNNNGG	2 cut(s)	259, 303
BseSI	GKGCMC	1 cut(s)	545
BseXI	GCAGC	2 cut(s)	258, 520
BseYI	CCCAGC	2 cut(s)	302, 634
BshFI	GGCC	1 cut(s)	375
BshVI	ATCGAT	1 cut(s)	161
BsiHKAI	GWGCWC	2 cut(s)	289, 643
BsiSI	CCGG	2 cut(s)	260, 282
BslFI	GGGAC	1 cut(s)	306
BslI	CCNNNNNNNGG	2 cut(s)	259, 303
BsmAI	GTCTC	1 cut(s)	574
BsmFI	GGGAC	1 cut(s)	306
BsnI	GGCC	1 cut(s)	375
Bsp1286I	GDGCHC	3 cut(s)	289, 545, 643
Bsp13I	TCCGGA	1 cut(s)	259
Bsp1407I	TGTACA	1 cut(s)	446
Bsp143I	GATC	3 cut(s)	249, 306, 504
BspACI	CCGC	3 cut(s)	121, 344, 511
BspANI	GGCC	1 cut(s)	375
BspDI	ATCGAT	1 cut(s)	161
BspEI	TCCGGA	1 cut(s)	259
BspLI	GGNNCC	1 cut(s)	348
BspOI	GCTAGC	1 cut(s)	278
BspPI	GGATC	2 cut(s)	244, 314
BsrGI	TGTACA	1 cut(s)	446
BssECI	CCNNGG	2 cut(s)	376, 411
BssMI	GATC	3 cut(s)	249, 306, 504
BssSI	CACGAG	1 cut(s)	17
BssT1I	CCWWGG	2 cut(s)	376, 411
Bst2BI	CACGAG	1 cut(s)	17
Bst2UI	CCWGG	1 cut(s)	351
Bst4CI	ACNGT	6 cut(s)	176, 199, 313, 436, 568, 645
BstAUI	TGTACA	1 cut(s)	446
BstC8I	GCNNGC	5 cut(s)	14, 109, 276, 531, 582
BstDEI	CTNAG	1 cut(s)	537
BstF5I	GGATG	2 cut(s)	449, 555
BstH2I	RGCGCY	1 cut(s)	244
BstHHI	GCGC	1 cut(s)	243
BstKTI	GATC	3 cut(s)	252, 309, 507
BstMAI	GTCTC	1 cut(s)	574
BstMBI	GATC	3 cut(s)	249, 306, 504
BstMWI	GCNNNNNNNGC	7 cut(s)	117, 284, 355, 372, 422, 581, 631
BstNI	CCWGG	1 cut(s)	351
BstNSI	RCATGY	3 cut(s)	111, 271, 584
BstSCI	CCNGG	1 cut(s)	349
BstSLI	GKGCMC	1 cut(s)	545
BstV1I	GCAGC	2 cut(s)	258, 520
Bsu15I	ATCGAT	1 cut(s)	161
BsuRI	GGCC	1 cut(s)	375
BsuTUI	ATCGAT	1 cut(s)	161
BtsCI	GGATG	2 cut(s)	449, 555
BtsIMutI	CAGTG	1 cut(s)	318
Cac8I	GCNNGC	5 cut(s)	14, 109, 276, 531, 582
CaiI	CAGNNNCTG	1 cut(s)	572
CfoI	GCGC	1 cut(s)	243
ClaI	ATCGAT	1 cut(s)	161
Csp6I	GTAC	3 cut(s)	331, 447, 646
CviAII	CATG	5 cut(s)	108, 113, 247, 268, 581
CviQI	GTAC	3 cut(s)	331, 447, 646
DdeI	CTNAG	1 cut(s)	537
DpnI	GATC	3 cut(s)	251, 308, 506
DpnII	GATC	3 cut(s)	249, 306, 504
Eco130I	CCWWGG	2 cut(s)	376, 411
Eco47III	AGCGCT	1 cut(s)	242
EcoRII	CCWGG	1 cut(s)	349
EcoT14I	CCWWGG	2 cut(s)	376, 411
EcoT22I	ATGCAT	1 cut(s)	360
ErhI	CCWWGG	2 cut(s)	376, 411
FaeI	CATG	5 cut(s)	111, 116, 250, 271, 584
FaqI	GGGAC	1 cut(s)	306
FatI	CATG	5 cut(s)	107, 112, 246, 267, 580
FauNDI	CATATG	1 cut(s)	393
FbaI	TGATCA	1 cut(s)	504
Fnu4HI	GCNGC	4 cut(s)	121, 272, 511, 534
FokI	GGATG	2 cut(s)	436, 542
Fsp4HI	GCNGC	4 cut(s)	121, 272, 511, 534
FspBI	CTAG	4 cut(s)	275, 386, 456, 661
GlaI	GCGC	1 cut(s)	242
GluI	GCNGC	4 cut(s)	121, 272, 511, 534
GsaI	CCCAGC	2 cut(s)	306, 638
HaeII	RGCGCY	1 cut(s)	244
HaeIII	GGCC	1 cut(s)	375
HapII	CCGG	2 cut(s)	260, 282
HhaI	GCGC	1 cut(s)	243
Hin1II	CATG	5 cut(s)	111, 116, 250, 271, 584
Hin6I	GCGC	1 cut(s)	241
HinP1I	GCGC	1 cut(s)	241
HindIII	AAGCTT	1 cut(s)	623
HinfI	GANTC	2 cut(s)	221, 494
HpaII	CCGG	2 cut(s)	260, 282
HphI	GGTGA	2 cut(s)	67, 188
Hpy188I	TCNGA	2 cut(s)	220, 616
Hpy188III	TCNNGA	2 cut(s)	260, 502
Hpy99I	CGWCG	2 cut(s)	521, 524
HpyCH4III	ACNGT	6 cut(s)	176, 199, 313, 436, 568, 645
HpyCH4V	TGCA	4 cut(s)	107, 358, 529, 580
HpyF10VI	GCNNNNNNNGC	7 cut(s)	117, 284, 355, 372, 422, 581, 631
HpyF3I	CTNAG	1 cut(s)	537
Hsp92II	CATG	5 cut(s)	111, 116, 250, 271, 584
HspAI	GCGC	1 cut(s)	241
Kpn2I	TCCGGA	1 cut(s)	259
Ksp22I	TGATCA	1 cut(s)	504
Kzo9I	GATC	3 cut(s)	249, 306, 504
LmnI	GCTCC	3 cut(s)	284, 346, 638
LpnPI	CCDG	8 cut(s)	273, 288, 295, 310, 336, 363, 515, 620
Lsp1109I	GCAGC	2 cut(s)	258, 520
LweI	GCATC	3 cut(s)	478, 516, 564
MaeI	CTAG	4 cut(s)	275, 386, 456, 661
MaeIII	GTNAC	6 cut(s)	34, 128, 176, 199, 212, 430
MalI	GATC	3 cut(s)	251, 308, 506
MboI	GATC	3 cut(s)	249, 306, 504
MboII	GAAGA	1 cut(s)	70
MhlI	GDGCHC	3 cut(s)	289, 545, 643
MluCI	AATT	3 cut(s)	144, 404, 482
MmeI	TCCRAC	1 cut(s)	258
MnlI	CCTC	3 cut(s)	203, 300, 604
Mph1103I	ATGCAT	1 cut(s)	360
MroI	TCCGGA	1 cut(s)	259
MroXI	GAANNNNTTC	1 cut(s)	332
MslI	CAYNNNNRTG	1 cut(s)	396
MspI	CCGG	2 cut(s)	260, 282
MspR9I	CCNGG	1 cut(s)	351
MvaI	CCWGG	1 cut(s)	351
MwoI	GCNNNNNNNGC	7 cut(s)	117, 284, 355, 372, 422, 581, 631
NdeI	CATATG	1 cut(s)	393
NdeII	GATC	3 cut(s)	249, 306, 504
NheI	GCTAGC	1 cut(s)	274
NlaIII	CATG	5 cut(s)	111, 116, 250, 271, 584
NlaIV	GGNNCC	1 cut(s)	348
NmuCI	GTSAC	3 cut(s)	128, 176, 430
NsiI	ATGCAT	1 cut(s)	360
NspI	RCATGY	3 cut(s)	111, 271, 584
PaeI	GCATGC	2 cut(s)	111, 584
PdmI	GAANNNNTTC	1 cut(s)	332
PfeI	GAWTC	2 cut(s)	221, 494
PkrI	GCNGC	4 cut(s)	122, 273, 512, 535
Psp6I	CCWGG	1 cut(s)	349
PspFI	CCCAGC	2 cut(s)	302, 634
PspGI	CCWGG	1 cut(s)	349
PspN4I	GGNNCC	1 cut(s)	348
PstNI	CAGNNNCTG	1 cut(s)	572
RsaI	GTAC	3 cut(s)	332, 448, 647
RsaNI	GTAC	3 cut(s)	331, 447, 646
RseI	CAYNNNNRTG	1 cut(s)	396
SatI	GCNGC	4 cut(s)	121, 272, 511, 534
Sau3AI	GATC	3 cut(s)	249, 306, 504
ScaI	AGTACT	1 cut(s)	332
ScrFI	CCNGG	1 cut(s)	351
SduI	GDGCHC	3 cut(s)	289, 545, 643
SetI	ASST	8 cut(s)	57, 141, 173, 214, 292, 391, 606, 627
SfaNI	GCATC	3 cut(s)	478, 516, 564
SmiMI	CAYNNNNRTG	1 cut(s)	396
SphI	GCATGC	2 cut(s)	111, 584
Sse9I	AATT	3 cut(s)	144, 404, 482
SsiI	CCGC	3 cut(s)	121, 344, 511
SspMI	CTAG	4 cut(s)	275, 386, 456, 661
StyD4I	CCNGG	1 cut(s)	349
StyI	CCWWGG	2 cut(s)	376, 411
TaaI	ACNGT	6 cut(s)	176, 199, 313, 436, 568, 645
TaqI	TCGA	2 cut(s)	161, 596
TasI	AATT	3 cut(s)	144, 404, 482
TatI	WGTACW	2 cut(s)	330, 446
TauI	GCSGC	2 cut(s)	123, 513
TfiI	GAWTC	2 cut(s)	221, 494
TscAI	CASTG	1 cut(s)	318
TseFI	GTSAC	3 cut(s)	128, 176, 430
TseI	GCWGC	2 cut(s)	271, 533
Tsp45I	GTSAC	3 cut(s)	128, 176, 430
TspDTI	ATGAA	1 cut(s)	483
TspGWI	ACGGA	1 cut(s)	222
TspRI	CASTG	1 cut(s)	318
XapI	RAATTY	2 cut(s)	144, 404
XceI	RCATGY	3 cut(s)	111, 271, 584
XmnI	GAANNNNTTC	1 cut(s)	332
XspI	CTAG	4 cut(s)	275, 386, 456, 661
ZrmI	AGTACT	1 cut(s)	332
Zsp2I	ATGCAT	1 cut(s)	360

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.