Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0005946

Physical Location & Seq

Genomic Coordinates Reverse (-)

21679546 .. 21681976

Gene Structure 2431 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G208300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1134 bp

ATGGTGAAGACACCCGAACAAGAACACCTCGTCGAGGCCTTTGGCTGGGCTGCTAGATACACGACTGGGCATCTCTCTCCATTTAACTTCTCAAGAAGGCACGAGCTAGTGGGAGAAGTGACAGAAGTGGGAAACAAGGTGAAGAAAACAAAAGTGGGAGATAGAGTGGGCGTGGGTGGGGGCTTTCAGCAGCTGTCCAAGGGGGCTTTCATGGACTCCCTTGCCAAATTTCCAGCCTTCCAAGGGGTCGTCCGACCCCTCTTGTCCCAACGTGGATCCGCCACTGGTGTGGTTGGTGCATGCCATGACTGCGATAACTGTAACAACGACCTTGAAATTTACTGCCCCAAAATGGTACTTACCTACAGCTCCATTTACCATGATGGAACAGTAACTTATGGCGGCTATTCAGACACAATGGTGGCCAATGAGCGTTACATAGTTCATTTTCCTGATAACATGCCTCTTGATGGTGGTGCTCCTCTTCTTTGTGCTGGGATCACAATGTATAGTCCTTTGAAATATTTTGGCTTAGCCGAGGCTGGGAAGCATATTGGCATTGTGGGCCTTGGTGGGCTTGGTCATGTTGGAGTGAAATTTGCCAAGGCATTTGGGGCAAAAGTGACTGTGCTTAGTACCTCCCCTAGCAAGAAAGACGAAGCTTTGAAACAATTTGGTGCTGATTCATTCTTGGTTAGCCGCGACCAGGACCAAATGCAGTTTGTTATCGATGTTGTTCTAATTATTTGGAACACGTTGAATTTTGATTATAGGCCGCCAGGGGCACGTTTGATGGCATCATTGACAGTCTCTGCTGTGCATGCAATTTCACCCTTGATTGACCTTTTGAAGTCTCATGGGAAGCTTATTATGGTGGGTGCACCGGATAAGCCACTTGAGTTACCCGTCTACCCTTTACTCATGGGAAGGAAATTGGTGGCCGGTAGTGCAGTTGGGGGTATGAAGGAGACACAAAAGATGATTGATTTTGCAGCAAAACATAACATAACGGCAGAGATTGAGGTTATTTCCATGGATTACGTGAACACAACACTGAAACGTCTTGTTAAAAATAATGTTAGATACCGATTTGTCATTGACATTGGAAACACTCTAGCTGCTACCAAGCCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

378

Amino Acids

40.92

Weight (kDa)

8.89

Isoelectric Point (pI)

28.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005946)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37970 AT4G37970 AT4G37970 AT4G37970
malus_domestica	MD01G1043100.v1.1 MD15G1308500.v1.1 MD15G1308700.v1.1
prunus_persica	Prupe.6G208100_v2.0.a1 Prupe.6G208200_v2.0.a1 Prupe.6G208300_v2.0.a1
pyrus_communis	pycom01g07030 pycom15g27280
rosa_chinensis	RchiOBHm_Chr2g0110451 RchiOBHm_Chr2g0110461
rosa_laevigata	RLG00000017807
rosa_multiflora	Rmu_sc0000389.1_g000001 Rmu_sc0001393.1_g000001 Rmu_sc0020342.1_g000011 Rmu_sc0027350.1_g000001 Rmu_sc0038245.1_g000001
rosa_roxburghii	Rroxscaffold_2G00133390
rosa_rugosa	Rorug02G0167900 Rorug02G0168000
rosa_samantha	Rh2BG229100 Rh2CG221300 Rh2CG221400
rosa_wichuraiana	Rw2G016950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	909
AccII	CGCG	1 cut(s)	702
AciI	CCGC	4 cut(s)	279, 402, 700, 776
AclWI	GGATC	3 cut(s)	270, 283, 506
AcoI	YGGCCR	2 cut(s)	423, 939
AcsI	RAATTY	4 cut(s)	227, 336, 596, 760
AfaI	GTAC	2 cut(s)	357, 637
AfiI	CCNNNNNNNGG	7 cut(s)	34, 45, 243, 352, 470, 543, 706
AflIII	ACRYGT	1 cut(s)	753
AgsI	TTSAA	5 cut(s)	335, 520, 667, 760, 850
AjnI	CCWGG	2 cut(s)	705, 778
AjuI	GAANNNNNNNTTGG	2 cut(s)	191, 223
AleI	CACNNNNGTG	2 cut(s)	287, 419
AluBI	AGCT	6 cut(s)	106, 193, 369, 662, 865, 1118
AluI	AGCT	6 cut(s)	106, 193, 369, 662, 865, 1118
Alw21I	GWGCWC	2 cut(s)	481, 883
Alw26I	GTCTC	3 cut(s)	814, 858, 962
Alw44I	GTGCAC	1 cut(s)	879
AlwI	GGATC	3 cut(s)	270, 283, 506
AlwNI	CAGNNNCTG	2 cut(s)	193, 812
AoxI	GGCC	5 cut(s)	36, 423, 565, 773, 939
ApaLI	GTGCAC	1 cut(s)	879
ApeKI	GCWGC	4 cut(s)	50, 190, 992, 1118
ApoI	RAATTY	4 cut(s)	227, 336, 596, 760
AspS9I	GGNCC	2 cut(s)	565, 709
AsuHPI	GGTGA	3 cut(s)	16, 151, 822
AvaII	GGWCC	1 cut(s)	709
BaeGI	GKGCMC	2 cut(s)	787, 883
BalI	TGGCCA	1 cut(s)	425
BamHI	GGATCC	1 cut(s)	275
BauI	CACGAG	1 cut(s)	101
BbsI	GAAGAC	1 cut(s)	14
Bbv12I	GWGCWC	2 cut(s)	481, 883
BbvI	GCAGC	4 cut(s)	37, 202, 1004, 1105
BccI	CCATC	3 cut(s)	377, 464, 787
BceAI	ACGGC	1 cut(s)	1026
BciT130I	CCWGG	2 cut(s)	707, 780
BcoDI	GTCTC	3 cut(s)	814, 858, 962
BfaI	CTAG	4 cut(s)	54, 107, 645, 1115
BfmI	CTRYAG	1 cut(s)	364
BisI	GCNGC	7 cut(s)	51, 191, 403, 700, 776, 993, 1119
BlpI	GCTNAGC	1 cut(s)	532
BlsI	GCNGC	7 cut(s)	52, 192, 404, 701, 777, 994, 1120
Bme1390I	CCNGG	2 cut(s)	707, 780
Bme18I	GGWCC	1 cut(s)	709
BmgT120I	GGNCC	2 cut(s)	565, 709
BmiI	GGNNCC	1 cut(s)	277
BmrFI	CCNGG	2 cut(s)	707, 780
BmrI	ACTGGG	1 cut(s)	75
BmsI	GCATC	2 cut(s)	79, 806
BmuI	ACTGGG	1 cut(s)	75
BpiI	GAAGAC	1 cut(s)	14
Bpu1102I	GCTNAGC	1 cut(s)	532
BpuEI	CTTGAG	2 cut(s)	76, 917
Bsa29I	ATCGAT	1 cut(s)	729
BsaAI	YACGTR	1 cut(s)	1042
BsaJI	CCNNGG	7 cut(s)	198, 241, 537, 568, 603, 779, 1032
BsaWI	WCCGGW	1 cut(s)	883
BsaXI	ACNNNNNCTCC	2 cut(s)	150, 180
Bsc4I	CCNNNNNNNGG	7 cut(s)	34, 45, 243, 352, 470, 543, 706
Bse118I	RCCGGY	1 cut(s)	941
Bse1I	ACTGG	2 cut(s)	70, 289
BseBI	CCWGG	2 cut(s)	707, 780
BseCI	ATCGAT	1 cut(s)	729
BseDI	CCNNGG	7 cut(s)	198, 241, 537, 568, 603, 779, 1032
BseLI	CCNNNNNNNGG	7 cut(s)	34, 45, 243, 352, 470, 543, 706
BseNI	ACTGG	2 cut(s)	70, 289
BseRI	GAGGAG	1 cut(s)	471
BseSI	GKGCMC	2 cut(s)	787, 883
BseXI	GCAGC	4 cut(s)	37, 202, 1004, 1105
BseYI	CCCAGC	3 cut(s)	45, 494, 542
BsgI	GTGCAG	1 cut(s)	969
Bsh1236I	CGCG	1 cut(s)	702
BshFI	GGCC	5 cut(s)	38, 425, 567, 775, 941
BshVI	ATCGAT	1 cut(s)	729
BsiHKAI	GWGCWC	2 cut(s)	481, 883
BsiSI	CCGG	2 cut(s)	884, 942
BslFI	GGGAC	1 cut(s)	250
BslI	CCNNNNNNNGG	7 cut(s)	34, 45, 243, 352, 470, 543, 706
BsmAI	GTCTC	3 cut(s)	814, 858, 962
BsmFI	GGGAC	1 cut(s)	250
BsnI	GGCC	5 cut(s)	38, 425, 567, 775, 941
Bsp1286I	GDGCHC	3 cut(s)	481, 787, 883
Bsp143I	GATC	2 cut(s)	275, 498
Bsp1720I	GCTNAGC	1 cut(s)	532
Bsp19I	CCATGG	1 cut(s)	1032
BspACI	CCGC	4 cut(s)	279, 402, 700, 776
BspANI	GGCC	5 cut(s)	38, 425, 567, 775, 941
BspDI	ATCGAT	1 cut(s)	729
BspFNI	CGCG	1 cut(s)	702
BspLI	GGNNCC	1 cut(s)	277
BspPI	GGATC	3 cut(s)	270, 283, 506
BsrFI	RCCGGY	1 cut(s)	941
BsrI	ACTGG	2 cut(s)	70, 289
BssAI	RCCGGY	1 cut(s)	941
BssECI	CCNNGG	7 cut(s)	198, 241, 537, 568, 603, 779, 1032
BssMI	GATC	2 cut(s)	275, 498
BssSI	CACGAG	1 cut(s)	101
BssT1I	CCWWGG	5 cut(s)	198, 241, 568, 603, 1032
Bst2BI	CACGAG	1 cut(s)	101
Bst2UI	CCWGG	2 cut(s)	707, 780
Bst4CI	ACNGT	4 cut(s)	320, 391, 628, 808
Bst6I	CTCTTC	1 cut(s)	489
BstBAI	YACGTR	1 cut(s)	1042
BstC8I	GCNNGC	2 cut(s)	301, 822
BstDEI	CTNAG	2 cut(s)	532, 632
BstDSI	CCRYGG	1 cut(s)	1032
BstENI	CCTNNNNNAGG	1 cut(s)	32
BstFNI	CGCG	1 cut(s)	702
BstKTI	GATC	2 cut(s)	278, 501
BstMAI	GTCTC	3 cut(s)	814, 858, 962
BstMBI	GATC	2 cut(s)	275, 498
BstMWI	GCNNNNNNNGC	5 cut(s)	309, 564, 614, 821, 947
BstNI	CCWGG	2 cut(s)	707, 780
BstNSI	RCATGY	3 cut(s)	303, 463, 824
BstSCI	CCNGG	2 cut(s)	705, 778
BstSFI	CTRYAG	1 cut(s)	364
BstSLI	GKGCMC	2 cut(s)	787, 883
BstUI	CGCG	1 cut(s)	702
BstV1I	GCAGC	4 cut(s)	37, 202, 1004, 1105
BstV2I	GAAGAC	1 cut(s)	14
BstX2I	RGATCY	1 cut(s)	275
BstXI	CCANNNNNNTGG	1 cut(s)	289
BstYI	RGATCY	1 cut(s)	275
Bsu15I	ATCGAT	1 cut(s)	729
BsuRI	GGCC	5 cut(s)	38, 425, 567, 775, 941
BsuTUI	ATCGAT	1 cut(s)	729
BtgI	CCRYGG	1 cut(s)	1032
BtsIMutI	CAGTG	2 cut(s)	282, 1052
Cac8I	GCNNGC	2 cut(s)	301, 822
CaiI	CAGNNNCTG	2 cut(s)	193, 812
Cfr10I	RCCGGY	1 cut(s)	941
Cfr13I	GGNCC	2 cut(s)	565, 709
ClaI	ATCGAT	1 cut(s)	729
Csp6I	GTAC	2 cut(s)	356, 636
CviQI	GTAC	2 cut(s)	356, 636
DdeI	CTNAG	2 cut(s)	532, 632
DpnI	GATC	2 cut(s)	277, 500
DpnII	GATC	2 cut(s)	275, 498
EaeI	YGGCCR	2 cut(s)	423, 939
Eam1104I	CTCTTC	1 cut(s)	489
EarI	CTCTTC	1 cut(s)	489
EciI	GGCGGA	1 cut(s)	268
Eco130I	CCWWGG	5 cut(s)	198, 241, 568, 603, 1032
Eco147I	AGGCCT	1 cut(s)	38
Eco47I	GGWCC	1 cut(s)	709
EcoNI	CCTNNNNNAGG	1 cut(s)	32
EcoRII	CCWGG	2 cut(s)	705, 778
EcoT14I	CCWWGG	5 cut(s)	198, 241, 568, 603, 1032
ErhI	CCWWGG	5 cut(s)	198, 241, 568, 603, 1032
FaqI	GGGAC	1 cut(s)	250
FblI	GTMKAC	1 cut(s)	909
Fnu4HI	GCNGC	7 cut(s)	51, 191, 403, 700, 776, 993, 1119
Fsp4HI	GCNGC	7 cut(s)	51, 191, 403, 700, 776, 993, 1119
FspBI	CTAG	4 cut(s)	54, 107, 645, 1115
GluI	GCNGC	7 cut(s)	51, 191, 403, 700, 776, 993, 1119
GsaI	CCCAGC	3 cut(s)	49, 498, 546
HaeIII	GGCC	5 cut(s)	38, 425, 567, 775, 941
HapII	CCGG	2 cut(s)	884, 942
HindIII	AAGCTT	2 cut(s)	660, 863
HinfI	GANTC	2 cut(s)	215, 683
HpaII	CCGG	2 cut(s)	884, 942
HphI	GGTGA	3 cut(s)	16, 151, 822
Hpy166II	GTNNAC	3 cut(s)	881, 910, 1045
Hpy188I	TCNGA	2 cut(s)	254, 412
Hpy188III	TCNNGA	3 cut(s)	93, 452, 467
Hpy8I	GTNNAC	3 cut(s)	881, 910, 1045
Hpy99I	CGWCG	1 cut(s)	35
HpyAV	CCTTC	4 cut(s)	90, 247, 921, 958
HpyCH4III	ACNGT	4 cut(s)	320, 391, 628, 808
HpyCH4IV	ACGT	5 cut(s)	271, 755, 787, 1041, 1060
HpyCH4V	TGCA	7 cut(s)	299, 718, 820, 824, 881, 950, 992
HpyF10VI	GCNNNNNNNGC	5 cut(s)	309, 564, 614, 821, 947
HpyF3I	CTNAG	2 cut(s)	532, 632
HpySE526I	ACGT	5 cut(s)	271, 755, 787, 1041, 1060
Kzo9I	GATC	2 cut(s)	275, 498
LmnI	GCTCC	2 cut(s)	374, 484
Lsp1109I	GCAGC	4 cut(s)	37, 202, 1004, 1105
LweI	GCATC	2 cut(s)	79, 806
MaeI	CTAG	4 cut(s)	54, 107, 645, 1115
MaeII	ACGT	5 cut(s)	271, 755, 787, 1041, 1060
MaeIII	GTNAC	6 cut(s)	118, 320, 391, 434, 622, 900
MalI	GATC	2 cut(s)	277, 500
MboI	GATC	2 cut(s)	275, 498
MboII	GAAGA	3 cut(s)	19, 154, 476
MflI	RGATCY	1 cut(s)	275
MhlI	GDGCHC	3 cut(s)	481, 787, 883
MlsI	TGGCCA	1 cut(s)	425
MluCI	AATT	8 cut(s)	227, 336, 596, 671, 741, 760, 825, 932
MluNI	TGGCCA	1 cut(s)	425
MlyI	GAGTC	1 cut(s)	209
MmeI	TCCRAC	2 cut(s)	277, 568
MnlI	CCTC	8 cut(s)	28, 38, 269, 474, 492, 532, 649, 1015
Mox20I	TGGCCA	1 cut(s)	425
MscI	TGGCCA	1 cut(s)	425
MseI	TTAA	2 cut(s)	84, 1068
MslI	CAYNNNNRTG	2 cut(s)	287, 419
Msp20I	TGGCCA	1 cut(s)	425
MspA1I	CMGCKG	1 cut(s)	193
MspI	CCGG	2 cut(s)	884, 942
MspR9I	CCNGG	2 cut(s)	707, 780
MvaI	CCWGG	2 cut(s)	707, 780
MvnI	CGCG	1 cut(s)	702
MwoI	GCNNNNNNNGC	5 cut(s)	309, 564, 614, 821, 947
NcoI	CCATGG	1 cut(s)	1032
NdeII	GATC	2 cut(s)	275, 498
NlaIV	GGNNCC	1 cut(s)	277
NmeAIII	GCCGAG	1 cut(s)	562
NmuCI	GTSAC	2 cut(s)	118, 622
NspI	RCATGY	3 cut(s)	303, 463, 824
OliI	CACNNNNGTG	2 cut(s)	287, 419
PaeI	GCATGC	2 cut(s)	303, 824
PceI	AGGCCT	1 cut(s)	38
PfeI	GAWTC	1 cut(s)	683
PkrI	GCNGC	7 cut(s)	52, 192, 404, 701, 777, 994, 1120
PleI	GAGTC	1 cut(s)	209
PpsI	GAGTC	1 cut(s)	209
Ppu21I	YACGTR	1 cut(s)	1042
Psp6I	CCWGG	2 cut(s)	705, 778
PspFI	CCCAGC	3 cut(s)	45, 494, 542
PspGI	CCWGG	2 cut(s)	705, 778
PspN4I	GGNNCC	1 cut(s)	277
PspPI	GGNCC	2 cut(s)	565, 709
PstNI	CAGNNNCTG	2 cut(s)	193, 812
PsuI	RGATCY	1 cut(s)	275
PvuII	CAGCTG	1 cut(s)	193
RsaI	GTAC	2 cut(s)	357, 637
RsaNI	GTAC	2 cut(s)	356, 636
RseI	CAYNNNNRTG	2 cut(s)	287, 419
SaqAI	TTAA	2 cut(s)	84, 1068
SatI	GCNGC	7 cut(s)	51, 191, 403, 700, 776, 993, 1119
Sau3AI	GATC	2 cut(s)	275, 498
Sau96I	GGNCC	2 cut(s)	565, 709
SchI	GAGTC	1 cut(s)	209
ScrFI	CCNGG	2 cut(s)	707, 780
SduI	GDGCHC	3 cut(s)	481, 787, 883
SfaNI	GCATC	2 cut(s)	79, 806
SfcI	CTRYAG	1 cut(s)	364
SinI	GGWCC	1 cut(s)	709
SmiMI	CAYNNNNRTG	2 cut(s)	287, 419
SmlI	CTYRAG	2 cut(s)	91, 896
SmoI	CTYRAG	2 cut(s)	91, 896
SphI	GCATGC	2 cut(s)	303, 824
Sse9I	AATT	8 cut(s)	227, 336, 596, 671, 741, 760, 825, 932
SseBI	AGGCCT	1 cut(s)	38
SsiI	CCGC	4 cut(s)	279, 402, 700, 776
SspI	AATATT	1 cut(s)	524
SspMI	CTAG	4 cut(s)	54, 107, 645, 1115
StuI	AGGCCT	1 cut(s)	38
StyD4I	CCNGG	2 cut(s)	705, 778
StyI	CCWWGG	5 cut(s)	198, 241, 568, 603, 1032
TaaI	ACNGT	4 cut(s)	320, 391, 628, 808
TaiI	ACGT	5 cut(s)	274, 758, 790, 1044, 1063
TaqI	TCGA	2 cut(s)	33, 729
TasI	AATT	8 cut(s)	227, 336, 596, 671, 741, 760, 825, 932
TauI	GCSGC	3 cut(s)	405, 702, 778
TfiI	GAWTC	1 cut(s)	683
Tru1I	TTAA	2 cut(s)	84, 1068
Tru9I	TTAA	2 cut(s)	84, 1068
TscAI	CASTG	2 cut(s)	289, 1059
TseFI	GTSAC	2 cut(s)	118, 622
TseI	GCWGC	4 cut(s)	50, 190, 992, 1118
Tsp45I	GTSAC	2 cut(s)	118, 622
TspDTI	ATGAA	4 cut(s)	199, 434, 675, 977
TspRI	CASTG	2 cut(s)	289, 1059
VneI	GTGCAC	1 cut(s)	879
VpaK11BI	GGWCC	1 cut(s)	709
XagI	CCTNNNNNAGG	1 cut(s)	32
XapI	RAATTY	4 cut(s)	227, 336, 596, 760
XceI	RCATGY	3 cut(s)	303, 463, 824
XmiI	GTMKAC	1 cut(s)	909
XspI	CTAG	4 cut(s)	54, 107, 645, 1115

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.