Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0005946

Physical Location & Seq

Genomic Coordinates Forward (+)

22459933 .. 22461484

Gene Structure 1552 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG229100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGGGCTATGGCAGGCACGAGATAGTGGGAGAAGTAACAGAAGTAGGAAGCAAGGTGAAGAAAGTAAAAGTGGGAGATAAAGTGGGTGTGGGTGGTGTTGTTGGTGCATGCCATGACTGCCGCAAATGTGACAATGACCTTGACATTTACTGCCCCAAATCGATTTTTACCTACGGTGACATATACCACGATGGAACAGTAACATACGGAGGTTACTCTGATTCAATGGTTGCCAACAAGCGCTACATCATCCATTTTCCGGATAACATGCCGCTAGCCGCCGGAGCACCTCTACTCTGTGCTGGGATCACAGTGTATAGTCCCTTGAAGTACTTCAGGTTAGCGGAGCCTGGTATGCATATTGGCATTGTTGGCCTTGGTGGGCTAGGTCATATGGGTGTGAAATTTGCCAAGGCTTTTGGGGCGAAAGTGACTGTGATTAGTACATCCCCTAGCAAGAAAGATGAAGCATTGAAACAATTTGGTGCTGATTCGTTCTTGATCAGCCGCAACGACGACGAGATGCAGGCTGCTAAGGGCACATTTGATGGCATCCTTGATACAGTCTCTGCTGTGCATGCCATTTCGCCCTTGATTGACCTTTTGAAGTCCGATGGGAAGCTTATTATGCTGGGAGCACCAGACAAGCCACTAGAACTAGACGTCTATCCTCTACTCTTGGGAAGGAAGTTGGTGGCTGGTAGTGCAATCGGTGGCATGAAGGAGACTCAAGAGATGATTGATTTCGCCACAGAGCAAAACATAACTGCGGATATTGAGGTTATCTCGATGGACTATTTGAACACGGCAATGGAGCGTCTTGCTAAGAACGATGTTAGATACCGCTTTGTGGTCGACGTCGGAAACACTAAAGGCTGCTACCAAGCCCTGACGGGTTCTTGCACTTCCATGTCAGAGTCGCATATTGTGTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009987 GO:0019438 GO:0019748 GO:0044237 GO:0044249 GO:0044550 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

311

Amino Acids

33.44

Weight (kDa)

5.91

Isoelectric Point (pI)

28.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_N	PF08240	6 - 88	2.1e-11	Alcohol dehydrogenase GroES-like domain
ADH_zinc_N	PF00107	128 - 251	1.4e-22	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005946)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37970 AT4G37970 AT4G37970 AT4G37970
malus_domestica	MD01G1043100.v1.1 MD15G1308500.v1.1 MD15G1308700.v1.1
prunus_persica	Prupe.6G208100_v2.0.a1 Prupe.6G208200_v2.0.a1 Prupe.6G208300_v2.0.a1
pyrus_communis	pycom01g07030 pycom15g27280
rosa_chinensis	RchiOBHm_Chr2g0110451 RchiOBHm_Chr2g0110461
rosa_laevigata	RLG00000017807
rosa_multiflora	Rmu_sc0000389.1_g000001 Rmu_sc0001393.1_g000001 Rmu_sc0020342.1_g000011 Rmu_sc0027350.1_g000001 Rmu_sc0038245.1_g000001
rosa_roxburghii	Rroxscaffold_2G00133390
rosa_rugosa	Rorug02G0167900 Rorug02G0168000
rosa_samantha	Rh2BG229100 Rh2CG221300 Rh2CG221400
rosa_wichuraiana	Rw2G016950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	666, 861
AccI	GTMKAC	1 cut(s)	855
AccIII	TCCGGA	1 cut(s)	259
AciI	CCGC	7 cut(s)	121, 272, 279, 344, 508, 770, 844
AclWI	GGATC	1 cut(s)	314
AcsI	RAATTY	1 cut(s)	404
AcuI	CTGAAG	1 cut(s)	319
AcyI	GRCGYC	2 cut(s)	663, 858
AfaI	GTAC	3 cut(s)	332, 445, 932
AfeI	AGCGCT	1 cut(s)	242
AfiI	CCNNNNNNNGG	2 cut(s)	259, 850
AgsI	TTSAA	5 cut(s)	225, 328, 475, 607, 802
AjnI	CCWGG	1 cut(s)	349
AluBI	AGCT	1 cut(s)	622
AluI	AGCT	1 cut(s)	622
Alw21I	GWGCWC	2 cut(s)	289, 640
Alw26I	GTCTC	2 cut(s)	571, 719
AlwI	GGATC	1 cut(s)	314
AlwNI	CAGNNNCTG	1 cut(s)	569
Aor13HI	TCCGGA	1 cut(s)	259
Aor51HI	AGCGCT	1 cut(s)	242
AoxI	GGCC	1 cut(s)	373
ApeKI	GCWGC	2 cut(s)	530, 876
ApoI	RAATTY	1 cut(s)	404
Asp700I	GAANNNNTTC	1 cut(s)	332
AspLEI	GCGC	1 cut(s)	243
AsuHPI	GGTGA	2 cut(s)	67, 188
AsuNHI	GCTAGC	1 cut(s)	274
BaeGI	GKGCMC	1 cut(s)	542
BauI	CACGAG	1 cut(s)	17
Bbv12I	GWGCWC	2 cut(s)	289, 640
BbvI	GCAGC	2 cut(s)	517, 863
BccI	CCATC	4 cut(s)	185, 542, 608, 784
BceAI	ACGGC	1 cut(s)	822
BciT130I	CCWGG	1 cut(s)	351
BclI	TGATCA	1 cut(s)	501
BcoDI	GTCTC	2 cut(s)	571, 719
BfaI	CTAG	5 cut(s)	275, 386, 453, 653, 659
BfoI	RGCGCY	1 cut(s)	244
BisI	GCNGC	6 cut(s)	121, 272, 279, 508, 531, 877
BlsI	GCNGC	6 cut(s)	122, 273, 280, 509, 532, 878
BmcAI	AGTACT	1 cut(s)	332
Bme1390I	CCNGG	1 cut(s)	351
BmiI	GGNNCC	1 cut(s)	348
BmrFI	CCNGG	1 cut(s)	351
BmsI	GCATC	2 cut(s)	513, 561
BmtI	GCTAGC	1 cut(s)	278
BplI	GAGNNNNNCTC	2 cut(s)	770, 802
Bpu10I	CCTNAGC	1 cut(s)	534
BpuEI	CTTGAG	1 cut(s)	714
Bsa29I	ATCGAT	1 cut(s)	161
BsaHI	GRCGYC	2 cut(s)	663, 858
BsaJI	CCNNGG	2 cut(s)	376, 411
BsaWI	WCCGGW	1 cut(s)	259
BsaXI	ACNNNNNCTCC	2 cut(s)	66, 96
Bsc4I	CCNNNNNNNGG	2 cut(s)	259, 850
Bse3DI	GCAATG	1 cut(s)	816
BseAI	TCCGGA	1 cut(s)	259
BseBI	CCWGG	1 cut(s)	351
BseCI	ATCGAT	1 cut(s)	161
BseDI	CCNNGG	2 cut(s)	376, 411
BseGI	GGATG	3 cut(s)	249, 446, 552
BseLI	CCNNNNNNNGG	2 cut(s)	259, 850
BseMI	GCAATG	1 cut(s)	816
BseSI	GKGCMC	1 cut(s)	542
BseXI	GCAGC	2 cut(s)	517, 863
BseYI	CCCAGC	2 cut(s)	302, 631
BshFI	GGCC	1 cut(s)	375
BshVI	ATCGAT	1 cut(s)	161
BsiHKAI	GWGCWC	2 cut(s)	289, 640
BsiSI	CCGG	2 cut(s)	260, 282
BslFI	GGGAC	1 cut(s)	306
BslI	CCNNNNNNNGG	2 cut(s)	259, 850
BsmAI	GTCTC	2 cut(s)	571, 719
BsmFI	GGGAC	1 cut(s)	306
BsnI	GGCC	1 cut(s)	375
Bsp1286I	GDGCHC	3 cut(s)	289, 542, 640
Bsp13I	TCCGGA	1 cut(s)	259
Bsp143I	GATC	2 cut(s)	306, 501
BspACI	CCGC	7 cut(s)	121, 272, 279, 344, 508, 770, 844
BspANI	GGCC	1 cut(s)	375
BspDI	ATCGAT	1 cut(s)	161
BspEI	TCCGGA	1 cut(s)	259
BspLI	GGNNCC	1 cut(s)	348
BspOI	GCTAGC	1 cut(s)	278
BspPI	GGATC	1 cut(s)	314
BsrDI	GCAATG	1 cut(s)	816
BssECI	CCNNGG	2 cut(s)	376, 411
BssMI	GATC	2 cut(s)	306, 501
BssNI	GRCGYC	2 cut(s)	663, 858
BssSI	CACGAG	1 cut(s)	17
BssT1I	CCWWGG	2 cut(s)	376, 411
Bst2BI	CACGAG	1 cut(s)	17
Bst2UI	CCWGG	1 cut(s)	351
Bst4CI	ACNGT	5 cut(s)	176, 199, 313, 436, 565
BstACI	GRCGYC	2 cut(s)	663, 858
BstC8I	GCNNGC	5 cut(s)	14, 109, 276, 528, 579
BstDEI	CTNAG	2 cut(s)	534, 825
BstF5I	GGATG	3 cut(s)	249, 446, 552
BstH2I	RGCGCY	1 cut(s)	244
BstHHI	GCGC	1 cut(s)	243
BstKTI	GATC	2 cut(s)	309, 504
BstMAI	GTCTC	2 cut(s)	571, 719
BstMBI	GATC	2 cut(s)	306, 501
BstMWI	GCNNNNNNNGC	8 cut(s)	117, 284, 355, 372, 422, 578, 628, 704
BstNI	CCWGG	1 cut(s)	351
BstNSI	RCATGY	3 cut(s)	111, 271, 581
BstSCI	CCNGG	1 cut(s)	349
BstSLI	GKGCMC	1 cut(s)	542
BstV1I	GCAGC	2 cut(s)	517, 863
Bsu15I	ATCGAT	1 cut(s)	161
BsuRI	GGCC	1 cut(s)	375
BsuTUI	ATCGAT	1 cut(s)	161
BtsCI	GGATG	3 cut(s)	249, 446, 552
BtsIMutI	CAGTG	1 cut(s)	318
Cac8I	GCNNGC	5 cut(s)	14, 109, 276, 528, 579
CaiI	CAGNNNCTG	1 cut(s)	569
CfoI	GCGC	1 cut(s)	243
ClaI	ATCGAT	1 cut(s)	161
CseI	GACGC	1 cut(s)	806
Csp6I	GTAC	3 cut(s)	331, 444, 931
CviAII	CATG	6 cut(s)	108, 113, 268, 578, 718, 910
CviQI	GTAC	3 cut(s)	331, 444, 931
DdeI	CTNAG	2 cut(s)	534, 825
DpnI	GATC	2 cut(s)	308, 503
DpnII	GATC	2 cut(s)	306, 501
Eco130I	CCWWGG	2 cut(s)	376, 411
Eco47III	AGCGCT	1 cut(s)	242
Eco57I	CTGAAG	1 cut(s)	319
EcoRII	CCWGG	1 cut(s)	349
EcoT14I	CCWWGG	2 cut(s)	376, 411
EcoT22I	ATGCAT	1 cut(s)	360
ErhI	CCWWGG	2 cut(s)	376, 411
FaeI	CATG	6 cut(s)	111, 116, 271, 581, 721, 913
FaqI	GGGAC	1 cut(s)	306
FatI	CATG	6 cut(s)	107, 112, 267, 577, 717, 909
FauNDI	CATATG	1 cut(s)	393
FbaI	TGATCA	1 cut(s)	501
FblI	GTMKAC	1 cut(s)	855
Fnu4HI	GCNGC	6 cut(s)	121, 272, 279, 508, 531, 877
FokI	GGATG	3 cut(s)	236, 433, 539
Fsp4HI	GCNGC	6 cut(s)	121, 272, 279, 508, 531, 877
FspBI	CTAG	5 cut(s)	275, 386, 453, 653, 659
GlaI	GCGC	1 cut(s)	242
GluI	GCNGC	6 cut(s)	121, 272, 279, 508, 531, 877
GsaI	CCCAGC	2 cut(s)	306, 635
HaeII	RGCGCY	1 cut(s)	244
HaeIII	GGCC	1 cut(s)	375
HapII	CCGG	2 cut(s)	260, 282
HgaI	GACGC	1 cut(s)	806
HhaI	GCGC	1 cut(s)	243
Hin1I	GRCGYC	2 cut(s)	663, 858
Hin1II	CATG	6 cut(s)	111, 116, 271, 581, 721, 913
Hin6I	GCGC	1 cut(s)	241
HinP1I	GCGC	1 cut(s)	241
HincII	GTYRAC	1 cut(s)	856
HindII	GTYRAC	1 cut(s)	856
HindIII	AAGCTT	1 cut(s)	620
HinfI	GANTC	4 cut(s)	221, 491, 727, 917
HpaII	CCGG	2 cut(s)	260, 282
HphI	GGTGA	2 cut(s)	67, 188
Hpy166II	GTNNAC	2 cut(s)	856, 931
Hpy188I	TCNGA	4 cut(s)	220, 613, 863, 916
Hpy188III	TCNNGA	4 cut(s)	260, 499, 731, 787
Hpy8I	GTNNAC	2 cut(s)	856, 931
Hpy99I	CGWCG	4 cut(s)	518, 521, 860, 863
HpyAV	CCTTC	2 cut(s)	678, 715
HpyCH4III	ACNGT	5 cut(s)	176, 199, 313, 436, 565
HpyCH4IV	ACGT	2 cut(s)	663, 858
HpyCH4V	TGCA	6 cut(s)	107, 358, 526, 577, 707, 903
HpyF10VI	GCNNNNNNNGC	8 cut(s)	117, 284, 355, 372, 422, 578, 628, 704
HpyF3I	CTNAG	2 cut(s)	534, 825
HpySE526I	ACGT	2 cut(s)	663, 858
Hsp92I	GRCGYC	2 cut(s)	663, 858
Hsp92II	CATG	6 cut(s)	111, 116, 271, 581, 721, 913
HspAI	GCGC	1 cut(s)	241
Kpn2I	TCCGGA	1 cut(s)	259
Ksp22I	TGATCA	1 cut(s)	501
Kzo9I	GATC	2 cut(s)	306, 501
LmnI	GCTCC	4 cut(s)	284, 346, 635, 814
Lsp1109I	GCAGC	2 cut(s)	517, 863
LweI	GCATC	2 cut(s)	513, 561
MaeI	CTAG	5 cut(s)	275, 386, 453, 653, 659
MaeII	ACGT	2 cut(s)	663, 858
MaeIII	GTNAC	6 cut(s)	34, 128, 176, 199, 212, 430
MalI	GATC	2 cut(s)	308, 503
MboI	GATC	2 cut(s)	306, 501
MboII	GAAGA	1 cut(s)	70
MhlI	GDGCHC	3 cut(s)	289, 542, 640
MluCI	AATT	2 cut(s)	404, 479
MlyI	GAGTC	2 cut(s)	721, 926
MmeI	TCCRAC	1 cut(s)	841
MnlI	CCTC	4 cut(s)	203, 300, 681, 772
Mph1103I	ATGCAT	1 cut(s)	360
MroI	TCCGGA	1 cut(s)	259
MroXI	GAANNNNTTC	1 cut(s)	332
MslI	CAYNNNNRTG	3 cut(s)	396, 809, 908
MspI	CCGG	2 cut(s)	260, 282
MspR9I	CCNGG	1 cut(s)	351
MvaI	CCWGG	1 cut(s)	351
MwoI	GCNNNNNNNGC	8 cut(s)	117, 284, 355, 372, 422, 578, 628, 704
NdeI	CATATG	1 cut(s)	393
NdeII	GATC	2 cut(s)	306, 501
NheI	GCTAGC	1 cut(s)	274
NlaIII	CATG	6 cut(s)	111, 116, 271, 581, 721, 913
NlaIV	GGNNCC	1 cut(s)	348
NmuCI	GTSAC	3 cut(s)	128, 176, 430
NsiI	ATGCAT	1 cut(s)	360
NspI	RCATGY	3 cut(s)	111, 271, 581
PaeI	GCATGC	2 cut(s)	111, 581
PdmI	GAANNNNTTC	1 cut(s)	332
PfeI	GAWTC	2 cut(s)	221, 491
PkrI	GCNGC	6 cut(s)	122, 273, 280, 509, 532, 878
PleI	GAGTC	2 cut(s)	721, 925
PpsI	GAGTC	2 cut(s)	721, 925
Psp6I	CCWGG	1 cut(s)	349
PspFI	CCCAGC	2 cut(s)	302, 631
PspGI	CCWGG	1 cut(s)	349
PspN4I	GGNNCC	1 cut(s)	348
PstNI	CAGNNNCTG	1 cut(s)	569
RsaI	GTAC	3 cut(s)	332, 445, 932
RsaNI	GTAC	3 cut(s)	331, 444, 931
RseI	CAYNNNNRTG	3 cut(s)	396, 809, 908
SalI	GTCGAC	1 cut(s)	854
SatI	GCNGC	6 cut(s)	121, 272, 279, 508, 531, 877
Sau3AI	GATC	2 cut(s)	306, 501
ScaI	AGTACT	1 cut(s)	332
SchI	GAGTC	2 cut(s)	721, 926
ScrFI	CCNGG	1 cut(s)	351
SduI	GDGCHC	3 cut(s)	289, 542, 640
SfaNI	GCATC	2 cut(s)	513, 561
SmiMI	CAYNNNNRTG	3 cut(s)	396, 809, 908
SmlI	CTYRAG	1 cut(s)	729
SmoI	CTYRAG	1 cut(s)	729
SphI	GCATGC	2 cut(s)	111, 581
Sse9I	AATT	2 cut(s)	404, 479
SsiI	CCGC	7 cut(s)	121, 272, 279, 344, 508, 770, 844
SspMI	CTAG	5 cut(s)	275, 386, 453, 653, 659
StyD4I	CCNGG	1 cut(s)	349
StyI	CCWWGG	2 cut(s)	376, 411
TaaI	ACNGT	5 cut(s)	176, 199, 313, 436, 565
TaiI	ACGT	2 cut(s)	666, 861
TaqI	TCGA	3 cut(s)	161, 788, 855
TasI	AATT	2 cut(s)	404, 479
TatI	WGTACW	3 cut(s)	330, 443, 930
TauI	GCSGC	4 cut(s)	123, 274, 281, 510
TfiI	GAWTC	2 cut(s)	221, 491
TscAI	CASTG	1 cut(s)	318
TseFI	GTSAC	3 cut(s)	128, 176, 430
TseI	GCWGC	2 cut(s)	530, 876
Tsp45I	GTSAC	3 cut(s)	128, 176, 430
TspDTI	ATGAA	2 cut(s)	480, 734
TspGWI	ACGGA	1 cut(s)	222
TspRI	CASTG	1 cut(s)	318
XapI	RAATTY	1 cut(s)	404
XceI	RCATGY	3 cut(s)	111, 271, 581
XmiI	GTMKAC	1 cut(s)	855
XmnI	GAANNNNTTC	1 cut(s)	332
XspI	CTAG	5 cut(s)	275, 386, 453, 653, 659
ZraI	GACGTC	2 cut(s)	664, 859
ZrmI	AGTACT	1 cut(s)	332
Zsp2I	ATGCAT	1 cut(s)	360

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.