Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0005946

Physical Location & Seq

Genomic Coordinates Reverse (-)

21675597 .. 21678583

Gene Structure 2987 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G208200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

ATGGCAAAGTCCCCCGAAGAAGAGCATCCTGTGAAGGCCTTTGGCTGGGCTGCCAGAGACACATCTGGGCATCTCTCTCCCTTTCACTTCTCCAGAAGAGCAACAGGTGATGAGGATGTGAGGTTTAAGGTGTTGTATTGTGGGATTTGCCACTCCGATCTTCACAGCATCAAGAATGAATGGGGCTTCTCTGTGTACCCTATGGTTCCGGGGCACGAGATTGTTGGGGAAGTGACAGAAGTGGGAAGCAAAGTGAAGAAAGTGAAAGTGGGAGATAAAGTTGGTGTGGGTTGTATGGTTGGTGCTTGCCATGCCTGCGACAACTGCAACAACGACCTTGAAAACTACTGCCCCAAAATGTTACTCACCTACAATTCCGTTTACACAGATGGAACACTCACATATGGAGGCTACTCGGATTCGATGGTCGCCAACGAGCACTACATCGTGCGTTTCCCTGAGAATATGCCACTGGATGCTGGTGCTCCTCTACTTTGTGCTGGGATCACAGTTTATAGTCCCTTGAAATATTTTGGCTTGGCAGAGCCAGGTAAGCATGTTGGCATTGTAGGGCTTGGTGGGCTTGGTCATGTGGGTGTCAAATTTGCAAAGGCACTTGGGGCAAAAGTGACTGTGATTAGTACTTCCCCTAGCAAGAAAGATGAAGCTTTGAATCAACTTGGTGCTCATTCATTCTTGGTTAGCAACGACCAGGACCAAATGCAGGCTGCCATGGGCACATTGGATGGCATCATTGACACAGTCTCTGCTGTGCATCCCATTGTGCCATTGATTGGTCTTTTGAAGTCTCATGGGAAGCTTATTCTACTAGGTGCACCAGAAAAGCCACTTGAGCTCCCTGTGTTTCCTTTAATCGTGGGAAGGAAGGTGTTGGCGGGTAGTGGAATTGGAGGCATGAAGGAGACACAGGAGATGATTGATTTCGCCGCAAAACACAACATAACGGCAGAGATTGAGGTAATTTCAATGGAGTATGTGAATACAGCAATGGAGCGTCTTGCTAAGAACGATGTTAGATACCGATTTGTAATTGATGTTGGGAACACCTTGGCTGCTACCAAGTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009987 GO:0019438 GO:0019748 GO:0044237 GO:0044249 GO:0044550 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

363

Amino Acids

38.9

Weight (kDa)

6.27

Isoelectric Point (pI)

26.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005946)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37970 AT4G37970 AT4G37970 AT4G37970
malus_domestica	MD01G1043100.v1.1 MD15G1308500.v1.1 MD15G1308700.v1.1
prunus_persica	Prupe.6G208100_v2.0.a1 Prupe.6G208200_v2.0.a1 Prupe.6G208300_v2.0.a1
pyrus_communis	pycom01g07030 pycom15g27280
rosa_chinensis	RchiOBHm_Chr2g0110451 RchiOBHm_Chr2g0110461
rosa_laevigata	RLG00000017807
rosa_multiflora	Rmu_sc0000389.1_g000001 Rmu_sc0001393.1_g000001 Rmu_sc0020342.1_g000011 Rmu_sc0027350.1_g000001 Rmu_sc0038245.1_g000001
rosa_roxburghii	Rroxscaffold_2G00133390
rosa_rugosa	Rorug02G0167900 Rorug02G0168000
rosa_samantha	Rh2BG229100 Rh2CG221300 Rh2CG221400
rosa_wichuraiana	Rw2G016950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	794
AciI	CCGC	2 cut(s)	896, 948
AclWI	GGATC	1 cut(s)	512
AcsI	RAATTY	1 cut(s)	602
AfaI	GTAC	2 cut(s)	197, 643
AfiI	CCNNNNNNNGG	3 cut(s)	45, 724, 794
AgsI	TTSAA	5 cut(s)	341, 526, 673, 805, 987
AjnI	CCWGG	2 cut(s)	547, 711
AluBI	AGCT	3 cut(s)	668, 820, 856
AluI	AGCT	3 cut(s)	668, 820, 856
Alw21I	GWGCWC	5 cut(s)	441, 487, 688, 838, 858
Alw26I	GTCTC	4 cut(s)	51, 769, 813, 917
Alw44I	GTGCAC	1 cut(s)	834
AlwI	GGATC	1 cut(s)	512
AlwNI	CAGNNNCTG	1 cut(s)	767
AoxI	GGCC	1 cut(s)	36
ApaLI	GTGCAC	1 cut(s)	834
ApeKI	GCWGC	3 cut(s)	50, 728, 1073
ApoI	RAATTY	1 cut(s)	602
AspS9I	GGNCC	1 cut(s)	715
AsuC2I	CCSGG	1 cut(s)	210
AsuHPI	GGTGA	2 cut(s)	119, 358
AvaII	GGWCC	1 cut(s)	715
BaeGI	GKGCMC	3 cut(s)	216, 740, 838
BanII	GRGCYC	1 cut(s)	858
BauI	CACGAG	1 cut(s)	215
Bbv12I	GWGCWC	5 cut(s)	441, 487, 688, 838, 858
BbvI	GCAGC	3 cut(s)	37, 715, 1060
BccI	CCATC	3 cut(s)	383, 418, 740
BceAI	ACGGC	1 cut(s)	981
BciT130I	CCWGG	2 cut(s)	549, 713
BcnI	CCSGG	1 cut(s)	210
BcoDI	GTCTC	4 cut(s)	51, 769, 813, 917
BfaI	CTAG	2 cut(s)	651, 830
BisI	GCNGC	4 cut(s)	51, 729, 948, 1074
BlsI	GCNGC	4 cut(s)	52, 730, 949, 1075
BmcAI	AGTACT	1 cut(s)	643
Bme1390I	CCNGG	3 cut(s)	210, 549, 713
Bme18I	GGWCC	1 cut(s)	715
BmgT120I	GGNCC	1 cut(s)	715
BmiI	GGNNCC	1 cut(s)	207
BmrFI	CCNGG	3 cut(s)	210, 549, 713
BmsI	GCATC	6 cut(s)	34, 79, 177, 466, 759, 784
BpmI	CTGGAG	1 cut(s)	76
BpuEI	CTTGAG	1 cut(s)	872
BpuMI	CCSGG	1 cut(s)	210
BsaJI	CCNNGG	3 cut(s)	209, 732, 1068
BsaXI	ACNNNNNCTCC	4 cut(s)	264, 294, 840, 870
Bsc4I	CCNNNNNNNGG	3 cut(s)	45, 724, 794
Bse1I	ACTGG	1 cut(s)	477
Bse3DI	GCAATG	1 cut(s)	1014
BseBI	CCWGG	2 cut(s)	549, 713
BseDI	CCNNGG	3 cut(s)	209, 732, 1068
BseGI	GGATG	5 cut(s)	25, 121, 481, 751, 775
BseLI	CCNNNNNNNGG	3 cut(s)	45, 724, 794
BseMI	GCAATG	1 cut(s)	1014
BseMII	CTCAG	1 cut(s)	450
BseNI	ACTGG	1 cut(s)	477
BseRI	GAGGAG	1 cut(s)	477
BseSI	GKGCMC	3 cut(s)	216, 740, 838
BseXI	GCAGC	3 cut(s)	37, 715, 1060
BseYI	CCCAGC	2 cut(s)	45, 500
BshFI	GGCC	1 cut(s)	38
BsiHKAI	GWGCWC	5 cut(s)	441, 487, 688, 838, 858
BsiSI	CCGG	1 cut(s)	209
BslFI	GGGAC	1 cut(s)	504
BslI	CCNNNNNNNGG	3 cut(s)	45, 724, 794
BsmAI	GTCTC	4 cut(s)	51, 769, 813, 917
BsmFI	GGGAC	1 cut(s)	504
BsnI	GGCC	1 cut(s)	38
Bsp1286I	GDGCHC	7 cut(s)	216, 441, 487, 688, 740, 838, 858
Bsp143I	GATC	2 cut(s)	157, 504
Bsp19I	CCATGG	1 cut(s)	732
BspACI	CCGC	2 cut(s)	896, 948
BspANI	GGCC	1 cut(s)	38
BspCNI	CTCAG	1 cut(s)	451
BspLI	GGNNCC	1 cut(s)	207
BspPI	GGATC	1 cut(s)	512
BspQI	GCTCTTC	2 cut(s)	15, 91
BsrDI	GCAATG	1 cut(s)	1014
BsrI	ACTGG	1 cut(s)	477
BssECI	CCNNGG	3 cut(s)	209, 732, 1068
BssMI	GATC	2 cut(s)	157, 504
BssSI	CACGAG	1 cut(s)	215
BssT1I	CCWWGG	2 cut(s)	732, 1068
Bst2BI	CACGAG	1 cut(s)	215
Bst2UI	CCWGG	2 cut(s)	549, 713
Bst4CI	ACNGT	3 cut(s)	511, 634, 763
Bst6I	CTCTTC	2 cut(s)	15, 91
BstC8I	GCNNGC	3 cut(s)	307, 316, 726
BstDEI	CTNAG	2 cut(s)	459, 1023
BstDSI	CCRYGG	1 cut(s)	732
BstF5I	GGATG	5 cut(s)	25, 121, 481, 751, 775
BstKTI	GATC	2 cut(s)	160, 507
BstMAI	GTCTC	4 cut(s)	51, 769, 813, 917
BstMBI	GATC	2 cut(s)	157, 504
BstMWI	GCNNNNNNNGC	7 cut(s)	311, 315, 324, 553, 580, 620, 853
BstNI	CCWGG	2 cut(s)	549, 713
BstNSI	RCATGY	1 cut(s)	560
BstSCI	CCNGG	3 cut(s)	208, 547, 711
BstSLI	GKGCMC	3 cut(s)	216, 740, 838
BstV1I	GCAGC	3 cut(s)	37, 715, 1060
BsuRI	GGCC	1 cut(s)	38
BtgI	CCRYGG	1 cut(s)	732
BtsCI	GGATG	5 cut(s)	25, 121, 481, 751, 775
BtsIMutI	CAGTG	1 cut(s)	470
Cac8I	GCNNGC	3 cut(s)	307, 316, 726
CaiI	CAGNNNCTG	1 cut(s)	767
Cfr13I	GGNCC	1 cut(s)	715
CseI	GACGC	1 cut(s)	1004
Csp6I	GTAC	2 cut(s)	196, 642
CviAII	CATG	6 cut(s)	311, 557, 590, 733, 812, 916
CviQI	GTAC	2 cut(s)	196, 642
DdeI	CTNAG	2 cut(s)	459, 1023
DpnI	GATC	2 cut(s)	159, 506
DpnII	GATC	2 cut(s)	157, 504
Eam1104I	CTCTTC	2 cut(s)	15, 91
EarI	CTCTTC	2 cut(s)	15, 91
Ecl136II	GAGCTC	1 cut(s)	856
Eco130I	CCWWGG	2 cut(s)	732, 1068
Eco147I	AGGCCT	1 cut(s)	38
Eco24I	GRGCYC	1 cut(s)	858
Eco47I	GGWCC	1 cut(s)	715
Eco53kI	GAGCTC	1 cut(s)	856
EcoICRI	GAGCTC	1 cut(s)	856
EcoRII	CCWGG	2 cut(s)	547, 711
EcoT14I	CCWWGG	2 cut(s)	732, 1068
EcoT38I	GRGCYC	1 cut(s)	858
ErhI	CCWWGG	2 cut(s)	732, 1068
FaeI	CATG	6 cut(s)	314, 560, 593, 736, 815, 919
FaqI	GGGAC	1 cut(s)	504
FatI	CATG	6 cut(s)	310, 556, 589, 732, 811, 915
FauI	CCCGC	1 cut(s)	889
FauNDI	CATATG	1 cut(s)	403
Fnu4HI	GCNGC	4 cut(s)	51, 729, 948, 1074
FokI	GGATG	5 cut(s)	12, 128, 488, 758, 762
FriOI	GRGCYC	1 cut(s)	858
Fsp4HI	GCNGC	4 cut(s)	51, 729, 948, 1074
FspBI	CTAG	2 cut(s)	651, 830
GluI	GCNGC	4 cut(s)	51, 729, 948, 1074
GsaI	CCCAGC	2 cut(s)	49, 504
GsuI	CTGGAG	1 cut(s)	76
HaeIII	GGCC	1 cut(s)	38
HapII	CCGG	1 cut(s)	209
HgaI	GACGC	1 cut(s)	1004
Hin1II	CATG	6 cut(s)	314, 560, 593, 736, 815, 919
HindIII	AAGCTT	2 cut(s)	666, 818
HinfI	GANTC	2 cut(s)	419, 673
HpaII	CCGG	1 cut(s)	209
HphI	GGTGA	2 cut(s)	119, 358
Hpy166II	GTNNAC	3 cut(s)	196, 382, 836
Hpy188I	TCNGA	2 cut(s)	157, 418
Hpy188III	TCNNGA	3 cut(s)	93, 172, 1086
Hpy8I	GTNNAC	3 cut(s)	196, 382, 836
HpyAV	CCTTC	4 cut(s)	28, 876, 880, 913
HpyCH4III	ACNGT	3 cut(s)	511, 634, 763
HpyCH4V	TGCA	5 cut(s)	327, 608, 724, 775, 836
HpyF10VI	GCNNNNNNNGC	7 cut(s)	311, 315, 324, 553, 580, 620, 853
HpyF3I	CTNAG	2 cut(s)	459, 1023
Hsp92II	CATG	6 cut(s)	314, 560, 593, 736, 815, 919
Kzo9I	GATC	2 cut(s)	157, 504
LguI	GCTCTTC	2 cut(s)	15, 91
LmnI	GCTCC	3 cut(s)	490, 861, 1012
Lsp1109I	GCAGC	3 cut(s)	37, 715, 1060
LweI	GCATC	6 cut(s)	34, 79, 177, 466, 759, 784
MaeI	CTAG	2 cut(s)	651, 830
MaeIII	GTNAC	3 cut(s)	232, 360, 628
MalI	GATC	2 cut(s)	159, 506
MboI	GATC	2 cut(s)	157, 504
MboII	GAAGA	5 cut(s)	29, 32, 108, 152, 268
MhlI	GDGCHC	7 cut(s)	216, 441, 487, 688, 740, 838, 858
MluCI	AATT	5 cut(s)	373, 602, 906, 981, 1050
MnlI	CCTC	6 cut(s)	106, 114, 401, 498, 905, 970
MseI	TTAA	2 cut(s)	126, 872
MslI	CAYNNNNRTG	1 cut(s)	594
MspI	CCGG	1 cut(s)	209
MspR9I	CCNGG	3 cut(s)	210, 549, 713
MvaI	CCWGG	2 cut(s)	549, 713
MwoI	GCNNNNNNNGC	7 cut(s)	311, 315, 324, 553, 580, 620, 853
NciI	CCSGG	1 cut(s)	210
NcoI	CCATGG	1 cut(s)	732
NdeI	CATATG	1 cut(s)	403
NdeII	GATC	2 cut(s)	157, 504
NlaIII	CATG	6 cut(s)	314, 560, 593, 736, 815, 919
NlaIV	GGNNCC	1 cut(s)	207
NmuCI	GTSAC	2 cut(s)	232, 628
NspI	RCATGY	1 cut(s)	560
PceI	AGGCCT	1 cut(s)	38
PciSI	GCTCTTC	2 cut(s)	15, 91
PfeI	GAWTC	2 cut(s)	419, 673
PflFI	GACNNNGTC	1 cut(s)	761
PflMI	CCANNNNNTGG	1 cut(s)	794
PkrI	GCNGC	4 cut(s)	52, 730, 949, 1075
Psp124BI	GAGCTC	1 cut(s)	858
Psp6I	CCWGG	2 cut(s)	547, 711
PspFI	CCCAGC	2 cut(s)	45, 500
PspGI	CCWGG	2 cut(s)	547, 711
PspN4I	GGNNCC	1 cut(s)	207
PspPI	GGNCC	1 cut(s)	715
PstNI	CAGNNNCTG	1 cut(s)	767
PsyI	GACNNNGTC	1 cut(s)	761
RsaI	GTAC	2 cut(s)	197, 643
RsaNI	GTAC	2 cut(s)	196, 642
RseI	CAYNNNNRTG	1 cut(s)	594
SacI	GAGCTC	1 cut(s)	858
SapI	GCTCTTC	2 cut(s)	15, 91
SaqAI	TTAA	2 cut(s)	126, 872
SatI	GCNGC	4 cut(s)	51, 729, 948, 1074
Sau3AI	GATC	2 cut(s)	157, 504
Sau96I	GGNCC	1 cut(s)	715
ScaI	AGTACT	1 cut(s)	643
ScrFI	CCNGG	3 cut(s)	210, 549, 713
SduI	GDGCHC	7 cut(s)	216, 441, 487, 688, 740, 838, 858
SfaNI	GCATC	6 cut(s)	34, 79, 177, 466, 759, 784
SinI	GGWCC	1 cut(s)	715
SmiMI	CAYNNNNRTG	1 cut(s)	594
SmlI	CTYRAG	1 cut(s)	851
SmoI	CTYRAG	1 cut(s)	851
Sse9I	AATT	5 cut(s)	373, 602, 906, 981, 1050
SseBI	AGGCCT	1 cut(s)	38
SsiI	CCGC	2 cut(s)	896, 948
SspI	AATATT	1 cut(s)	530
SspMI	CTAG	2 cut(s)	651, 830
SstI	GAGCTC	1 cut(s)	858
StuI	AGGCCT	1 cut(s)	38
StyD4I	CCNGG	3 cut(s)	208, 547, 711
StyI	CCWWGG	2 cut(s)	732, 1068
TaaI	ACNGT	3 cut(s)	511, 634, 763
TaqI	TCGA	1 cut(s)	422
TasI	AATT	5 cut(s)	373, 602, 906, 981, 1050
TatI	WGTACW	1 cut(s)	641
TauI	GCSGC	1 cut(s)	950
TfiI	GAWTC	2 cut(s)	419, 673
Tru1I	TTAA	2 cut(s)	126, 872
Tru9I	TTAA	2 cut(s)	126, 872
TscAI	CASTG	1 cut(s)	477
TseFI	GTSAC	2 cut(s)	232, 628
TseI	GCWGC	3 cut(s)	50, 728, 1073
Tsp45I	GTSAC	2 cut(s)	232, 628
TspDTI	ATGAA	4 cut(s)	192, 678, 681, 932
TspGWI	ACGGA	1 cut(s)	367
TspRI	CASTG	1 cut(s)	477
Tth111I	GACNNNGTC	1 cut(s)	761
Van91I	CCANNNNNTGG	1 cut(s)	794
VneI	GTGCAC	1 cut(s)	834
VpaK11BI	GGWCC	1 cut(s)	715
XapI	RAATTY	1 cut(s)	602
XceI	RCATGY	1 cut(s)	560
XcmI	CCANNNNNNNNNTGG	1 cut(s)	739
XspI	CTAG	2 cut(s)	651, 830
ZrmI	AGTACT	1 cut(s)	643

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.