Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0020342.1

Orthogroup ID

OG0005946

Physical Location & Seq

Genomic Coordinates Forward (+)

44623 .. 45691

Gene Structure 1069 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0020342.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

atggtttccaacgagcgctacatgatccattttccggacaacatgctgctagccgccggagcacctctatcctgtgctgggatcacagtgtatagtcccttgaagtacttcgggttagcggagcctggtatgcatattggcattgttggccttggtgggctaggtcatatgggtgtgaaatttgccaaggcttttggggcgaaagtgactgtgattagttgtacatcccctagcaagaaagatgaagcattgaaacaatttgatgctgattcgttcttgatcagccgcaacgacgacgagatgcaggctgctaagggcacatttgatggcatccttgatacagtctctgctgtgcatgccatttcgcccttgattgaccttttgaagtccgatgggaagcttattatgctgggagcaccagacaagccactagaactagacgtctatcctctactcttgggaaggaaattggtggctggtagtgcaatcggtggcatgaaggagactcaagagatgattgatttcgccacagatcgagcaaaacataactgcggatattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009987 GO:0019438 GO:0019748 GO:0044237 GO:0044249 GO:0044550 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

186

Amino Acids

19.81

Weight (kDa)

5.92

Isoelectric Point (pI)

31.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005946)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37970 AT4G37970 AT4G37970 AT4G37970
malus_domestica	MD01G1043100.v1.1 MD15G1308500.v1.1 MD15G1308700.v1.1
prunus_persica	Prupe.6G208100_v2.0.a1 Prupe.6G208200_v2.0.a1 Prupe.6G208300_v2.0.a1
pyrus_communis	pycom01g07030 pycom15g27280
rosa_chinensis	RchiOBHm_Chr2g0110451 RchiOBHm_Chr2g0110461
rosa_laevigata	RLG00000017807
rosa_multiflora	Rmu_sc0000389.1_g000001 Rmu_sc0001393.1_g000001 Rmu_sc0020342.1_g000011 Rmu_sc0027350.1_g000001 Rmu_sc0038245.1_g000001
rosa_roxburghii	Rroxscaffold_2G00133390
rosa_rugosa	Rorug02G0167900 Rorug02G0168000
rosa_samantha	Rh2BG229100 Rh2CG221300 Rh2CG221400
rosa_wichuraiana	Rw2G016950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	444
AccIII	TCCGGA	1 cut(s)	34
AciI	CCGC	4 cut(s)	54, 119, 286, 552
AclWI	GGATC	2 cut(s)	19, 89
AcsI	RAATTY	1 cut(s)	179
AcyI	GRCGYC	1 cut(s)	441
AfaI	GTAC	2 cut(s)	107, 223
AfeI	AGCGCT	1 cut(s)	17
AfiI	CCNNNNNNNGG	2 cut(s)	34, 78
AgsI	TTSAA	3 cut(s)	103, 253, 385
AjnI	CCWGG	1 cut(s)	124
AluBI	AGCT	1 cut(s)	400
AluI	AGCT	1 cut(s)	400
Alw21I	GWGCWC	2 cut(s)	64, 418
Alw26I	GTCTC	2 cut(s)	349, 497
AlwI	GGATC	2 cut(s)	19, 89
AlwNI	CAGNNNCTG	1 cut(s)	347
Aor13HI	TCCGGA	1 cut(s)	34
Aor51HI	AGCGCT	1 cut(s)	17
AoxI	GGCC	1 cut(s)	148
ApeKI	GCWGC	2 cut(s)	46, 308
ApoI	RAATTY	1 cut(s)	179
Asp700I	GAANNNNTTC	1 cut(s)	107
AspLEI	GCGC	1 cut(s)	18
AsuNHI	GCTAGC	1 cut(s)	49
BaeGI	GKGCMC	1 cut(s)	320
Bbv12I	GWGCWC	2 cut(s)	64, 418
BbvI	GCAGC	2 cut(s)	33, 295
BccI	CCATC	2 cut(s)	320, 386
BciT130I	CCWGG	1 cut(s)	126
BclI	TGATCA	1 cut(s)	279
BcoDI	GTCTC	2 cut(s)	349, 497
BfaI	CTAG	5 cut(s)	50, 161, 231, 431, 437
BfoI	RGCGCY	1 cut(s)	19
BisI	GCNGC	4 cut(s)	47, 54, 286, 309
BlsI	GCNGC	4 cut(s)	48, 55, 287, 310
BmcAI	AGTACT	1 cut(s)	107
Bme1390I	CCNGG	1 cut(s)	126
BmiI	GGNNCC	1 cut(s)	123
BmrFI	CCNGG	1 cut(s)	126
BmsI	GCATC	3 cut(s)	253, 291, 339
BmtI	GCTAGC	1 cut(s)	53
Bpu10I	CCTNAGC	1 cut(s)	312
BpuEI	CTTGAG	1 cut(s)	492
BsaHI	GRCGYC	1 cut(s)	441
BsaJI	CCNNGG	2 cut(s)	151, 186
BsaWI	WCCGGW	1 cut(s)	34
Bsc4I	CCNNNNNNNGG	2 cut(s)	34, 78
BseAI	TCCGGA	1 cut(s)	34
BseBI	CCWGG	1 cut(s)	126
BseDI	CCNNGG	2 cut(s)	151, 186
BseGI	GGATG	2 cut(s)	224, 330
BseLI	CCNNNNNNNGG	2 cut(s)	34, 78
BseSI	GKGCMC	1 cut(s)	320
BseXI	GCAGC	2 cut(s)	33, 295
BseYI	CCCAGC	2 cut(s)	77, 409
BshFI	GGCC	1 cut(s)	150
BsiHKAI	GWGCWC	2 cut(s)	64, 418
BsiSI	CCGG	2 cut(s)	35, 57
BslFI	GGGAC	1 cut(s)	81
BslI	CCNNNNNNNGG	2 cut(s)	34, 78
BsmAI	GTCTC	2 cut(s)	349, 497
BsmFI	GGGAC	1 cut(s)	81
BsnI	GGCC	1 cut(s)	150
Bsp1286I	GDGCHC	3 cut(s)	64, 320, 418
Bsp13I	TCCGGA	1 cut(s)	34
Bsp1407I	TGTACA	1 cut(s)	221
Bsp143I	GATC	4 cut(s)	24, 81, 279, 532
BspACI	CCGC	4 cut(s)	54, 119, 286, 552
BspANI	GGCC	1 cut(s)	150
BspEI	TCCGGA	1 cut(s)	34
BspLI	GGNNCC	1 cut(s)	123
BspOI	GCTAGC	1 cut(s)	53
BspPI	GGATC	2 cut(s)	19, 89
BsrGI	TGTACA	1 cut(s)	221
BssECI	CCNNGG	2 cut(s)	151, 186
BssMI	GATC	4 cut(s)	24, 81, 279, 532
BssNI	GRCGYC	1 cut(s)	441
BssT1I	CCWWGG	2 cut(s)	151, 186
Bst2UI	CCWGG	1 cut(s)	126
Bst4CI	ACNGT	3 cut(s)	88, 211, 343
BstACI	GRCGYC	1 cut(s)	441
BstAUI	TGTACA	1 cut(s)	221
BstC8I	GCNNGC	3 cut(s)	51, 306, 357
BstDEI	CTNAG	1 cut(s)	312
BstF5I	GGATG	2 cut(s)	224, 330
BstH2I	RGCGCY	1 cut(s)	19
BstHHI	GCGC	1 cut(s)	18
BstKTI	GATC	4 cut(s)	27, 84, 282, 535
BstMAI	GTCTC	2 cut(s)	349, 497
BstMBI	GATC	4 cut(s)	24, 81, 279, 532
BstMWI	GCNNNNNNNGC	7 cut(s)	59, 130, 147, 197, 356, 406, 482
BstNI	CCWGG	1 cut(s)	126
BstNSI	RCATGY	2 cut(s)	46, 359
BstSCI	CCNGG	1 cut(s)	124
BstSLI	GKGCMC	1 cut(s)	320
BstV1I	GCAGC	2 cut(s)	33, 295
BsuRI	GGCC	1 cut(s)	150
BtsCI	GGATG	2 cut(s)	224, 330
BtsIMutI	CAGTG	1 cut(s)	93
Cac8I	GCNNGC	3 cut(s)	51, 306, 357
CaiI	CAGNNNCTG	1 cut(s)	347
CfoI	GCGC	1 cut(s)	18
Csp6I	GTAC	2 cut(s)	106, 222
CviAII	CATG	4 cut(s)	22, 43, 356, 496
CviQI	GTAC	2 cut(s)	106, 222
DdeI	CTNAG	1 cut(s)	312
DpnI	GATC	4 cut(s)	26, 83, 281, 534
DpnII	GATC	4 cut(s)	24, 81, 279, 532
Eco130I	CCWWGG	2 cut(s)	151, 186
Eco47III	AGCGCT	1 cut(s)	17
EcoRII	CCWGG	1 cut(s)	124
EcoT14I	CCWWGG	2 cut(s)	151, 186
EcoT22I	ATGCAT	1 cut(s)	135
ErhI	CCWWGG	2 cut(s)	151, 186
FaeI	CATG	4 cut(s)	25, 46, 359, 499
FaqI	GGGAC	1 cut(s)	81
FatI	CATG	4 cut(s)	21, 42, 355, 495
FauNDI	CATATG	1 cut(s)	168
FbaI	TGATCA	1 cut(s)	279
Fnu4HI	GCNGC	4 cut(s)	47, 54, 286, 309
FokI	GGATG	2 cut(s)	211, 317
Fsp4HI	GCNGC	4 cut(s)	47, 54, 286, 309
FspBI	CTAG	5 cut(s)	50, 161, 231, 431, 437
GlaI	GCGC	1 cut(s)	17
GluI	GCNGC	4 cut(s)	47, 54, 286, 309
GsaI	CCCAGC	2 cut(s)	81, 413
HaeII	RGCGCY	1 cut(s)	19
HaeIII	GGCC	1 cut(s)	150
HapII	CCGG	2 cut(s)	35, 57
HhaI	GCGC	1 cut(s)	18
Hin1I	GRCGYC	1 cut(s)	441
Hin1II	CATG	4 cut(s)	25, 46, 359, 499
Hin6I	GCGC	1 cut(s)	16
HinP1I	GCGC	1 cut(s)	16
HindIII	AAGCTT	1 cut(s)	398
HinfI	GANTC	2 cut(s)	269, 505
HpaII	CCGG	2 cut(s)	35, 57
Hpy188I	TCNGA	1 cut(s)	391
Hpy188III	TCNNGA	3 cut(s)	35, 277, 509
Hpy99I	CGWCG	2 cut(s)	296, 299
HpyAV	CCTTC	2 cut(s)	456, 493
HpyCH4III	ACNGT	3 cut(s)	88, 211, 343
HpyCH4IV	ACGT	1 cut(s)	441
HpyCH4V	TGCA	4 cut(s)	133, 304, 355, 485
HpyF10VI	GCNNNNNNNGC	7 cut(s)	59, 130, 147, 197, 356, 406, 482
HpyF3I	CTNAG	1 cut(s)	312
HpySE526I	ACGT	1 cut(s)	441
Hsp92I	GRCGYC	1 cut(s)	441
Hsp92II	CATG	4 cut(s)	25, 46, 359, 499
HspAI	GCGC	1 cut(s)	16
Kpn2I	TCCGGA	1 cut(s)	34
Ksp22I	TGATCA	1 cut(s)	279
Kzo9I	GATC	4 cut(s)	24, 81, 279, 532
LmnI	GCTCC	3 cut(s)	59, 121, 413
Lsp1109I	GCAGC	2 cut(s)	33, 295
LweI	GCATC	3 cut(s)	253, 291, 339
MaeI	CTAG	5 cut(s)	50, 161, 231, 431, 437
MaeII	ACGT	1 cut(s)	441
MaeIII	GTNAC	1 cut(s)	205
MalI	GATC	4 cut(s)	26, 83, 281, 534
MboI	GATC	4 cut(s)	24, 81, 279, 532
MhlI	GDGCHC	3 cut(s)	64, 320, 418
MluCI	AATT	3 cut(s)	179, 257, 467
MlyI	GAGTC	1 cut(s)	499
MmeI	TCCRAC	1 cut(s)	33
MnlI	CCTC	2 cut(s)	75, 459
Mph1103I	ATGCAT	1 cut(s)	135
MroI	TCCGGA	1 cut(s)	34
MroXI	GAANNNNTTC	1 cut(s)	107
MslI	CAYNNNNRTG	1 cut(s)	171
MspI	CCGG	2 cut(s)	35, 57
MspR9I	CCNGG	1 cut(s)	126
MvaI	CCWGG	1 cut(s)	126
MwoI	GCNNNNNNNGC	7 cut(s)	59, 130, 147, 197, 356, 406, 482
NdeI	CATATG	1 cut(s)	168
NdeII	GATC	4 cut(s)	24, 81, 279, 532
NheI	GCTAGC	1 cut(s)	49
NlaIII	CATG	4 cut(s)	25, 46, 359, 499
NlaIV	GGNNCC	1 cut(s)	123
NmuCI	GTSAC	1 cut(s)	205
NsiI	ATGCAT	1 cut(s)	135
NspI	RCATGY	2 cut(s)	46, 359
PaeI	GCATGC	1 cut(s)	359
PdmI	GAANNNNTTC	1 cut(s)	107
PfeI	GAWTC	1 cut(s)	269
PkrI	GCNGC	4 cut(s)	48, 55, 287, 310
PleI	GAGTC	1 cut(s)	499
PpsI	GAGTC	1 cut(s)	499
Psp6I	CCWGG	1 cut(s)	124
PspFI	CCCAGC	2 cut(s)	77, 409
PspGI	CCWGG	1 cut(s)	124
PspN4I	GGNNCC	1 cut(s)	123
PstNI	CAGNNNCTG	1 cut(s)	347
RsaI	GTAC	2 cut(s)	107, 223
RsaNI	GTAC	2 cut(s)	106, 222
RseI	CAYNNNNRTG	1 cut(s)	171
SatI	GCNGC	4 cut(s)	47, 54, 286, 309
Sau3AI	GATC	4 cut(s)	24, 81, 279, 532
ScaI	AGTACT	1 cut(s)	107
SchI	GAGTC	1 cut(s)	499
ScrFI	CCNGG	1 cut(s)	126
SduI	GDGCHC	3 cut(s)	64, 320, 418
SetI	ASST	5 cut(s)	67, 166, 381, 402, 444
SfaNI	GCATC	3 cut(s)	253, 291, 339
SmiMI	CAYNNNNRTG	1 cut(s)	171
SmlI	CTYRAG	1 cut(s)	507
SmoI	CTYRAG	1 cut(s)	507
SphI	GCATGC	1 cut(s)	359
Sse9I	AATT	3 cut(s)	179, 257, 467
SsiI	CCGC	4 cut(s)	54, 119, 286, 552
SspMI	CTAG	5 cut(s)	50, 161, 231, 431, 437
StyD4I	CCNGG	1 cut(s)	124
StyI	CCWWGG	2 cut(s)	151, 186
TaaI	ACNGT	3 cut(s)	88, 211, 343
TaiI	ACGT	1 cut(s)	444
TaqI	TCGA	1 cut(s)	535
TasI	AATT	3 cut(s)	179, 257, 467
TatI	WGTACW	2 cut(s)	105, 221
TauI	GCSGC	2 cut(s)	56, 288
TfiI	GAWTC	1 cut(s)	269
TscAI	CASTG	1 cut(s)	93
TseFI	GTSAC	1 cut(s)	205
TseI	GCWGC	2 cut(s)	46, 308
Tsp45I	GTSAC	1 cut(s)	205
TspDTI	ATGAA	2 cut(s)	258, 512
TspRI	CASTG	1 cut(s)	93
XapI	RAATTY	1 cut(s)	179
XceI	RCATGY	2 cut(s)	46, 359
XmnI	GAANNNNTTC	1 cut(s)	107
XspI	CTAG	5 cut(s)	50, 161, 231, 431, 437
ZraI	GACGTC	1 cut(s)	442
ZrmI	AGTACT	1 cut(s)	107
Zsp2I	ATGCAT	1 cut(s)	135

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.