Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0005946

Physical Location & Seq

Genomic Coordinates Reverse (-)

70616469 .. 70624336

Gene Structure 7868 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00133390.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGGCCGAGAAGCCGCAAAGGAGGTTGTTGCCGGATCGACGACGATATTTTGGATCTCACCAGCAACTAATAACTATGTCCGGTGAGTCAACAACCAGTAACACAACCATTAACGCAAAGCCTTCTCATTCTCCCCCTCCCCTTTTAATTGAACTAGAGGGTACTCTGGCTAGTGCAATATTAATTAGAGTTCTACTAACTTGGCTTATGGGCTGTGGCAGGCACGAGATCGTGGGAGAAGTAACAGAAGTAGGAAGCGAGGTGAAGAAAGTAAAAGTGGGAGATAAAGTGGGTGTGGGTGGTGTTGTTGGTGCATGCCATGACTGCCGCAAATGTGACAATGACCTTGAAATTTACTGCCCCAAATCGATTTTTACCTACGGTGACATATACCACGATGGAACAGTAACATACGGAGGTTACTCTGATTCAATGGTTGCCAACGTGCGCTACATCATCCATTTTCCGGACAACATGCTGCTAGCTGCCGGAGCACCTCTACTCTGTGCTGGGATCACAGTGTATAGTCCCTTGAAGTACTTCGGGTTAGCGGAGCCTGGTATGCATATTGGCATTGTTGGCCTTGGTGGGCTAGGTCATATGGGTGTGAAATTTGCCAAGGCTTTTGGGGCGAAAGTGACTGTGATTAGTACATCCCCTAGCAAGAAAGATGAAGCATTGAAACAATTTGGTGCTGATTCGTTCTTGATCAGCCGCAACGACGAGGAGATGCAGGCTGCTAAGGGCACATTTGATGGCATCCTTGATACAGTCTCTGCTGTGCATGCCATTTCGCCCTTGATTGACCTTTTGAAGTCCGATGGGAAGCTTATTATGCTGGGAGCACCAGACAAGCCACTAGAACTAGACGTCTATCCTCTACTCTTGGGTGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009987 GO:0019438 GO:0019748 GO:0044237 GO:0044249 GO:0044550 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

298

Amino Acids

31.99

Weight (kDa)

6.14

Isoelectric Point (pI)

35.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_N	PF08240	75 - 157	4e-11	Alcohol dehydrogenase GroES-like domain
ADH_zinc_N	PF00107	197 - 297	4.3e-18	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005946)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37970 AT4G37970 AT4G37970 AT4G37970
malus_domestica	MD01G1043100.v1.1 MD15G1308500.v1.1 MD15G1308700.v1.1
prunus_persica	Prupe.6G208100_v2.0.a1 Prupe.6G208200_v2.0.a1 Prupe.6G208300_v2.0.a1
pyrus_communis	pycom01g07030 pycom15g27280
rosa_chinensis	RchiOBHm_Chr2g0110451 RchiOBHm_Chr2g0110461
rosa_laevigata	RLG00000017807
rosa_multiflora	Rmu_sc0000389.1_g000001 Rmu_sc0001393.1_g000001 Rmu_sc0020342.1_g000011 Rmu_sc0027350.1_g000001 Rmu_sc0038245.1_g000001
rosa_roxburghii	Rroxscaffold_2G00133390
rosa_rugosa	Rorug02G0167900 Rorug02G0168000
rosa_samantha	Rh2BG229100 Rh2CG221300 Rh2CG221400
rosa_wichuraiana	Rw2G016950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	873
AccIII	TCCGGA	1 cut(s)	466
AciI	CCGC	4 cut(s)	14, 328, 551, 715
AclWI	GGATC	3 cut(s)	42, 61, 521
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	2 cut(s)	351, 611
AcyI	GRCGYC	1 cut(s)	870
AfaI	GTAC	3 cut(s)	163, 539, 652
AfiI	CCNNNNNNNGG	1 cut(s)	466
AgsI	TTSAA	6 cut(s)	152, 350, 432, 535, 682, 814
AjnI	CCWGG	1 cut(s)	556
AluBI	AGCT	2 cut(s)	485, 829
AluI	AGCT	2 cut(s)	485, 829
Alw21I	GWGCWC	2 cut(s)	496, 847
Alw26I	GTCTC	1 cut(s)	778
AlwI	GGATC	3 cut(s)	42, 61, 521
AlwNI	CAGNNNCTG	1 cut(s)	776
Aor13HI	TCCGGA	1 cut(s)	466
AoxI	GGCC	2 cut(s)	3, 580
ApeKI	GCWGC	3 cut(s)	478, 485, 737
ApoI	RAATTY	2 cut(s)	351, 611
AseI	ATTAAT	1 cut(s)	182
Asp700I	GAANNNNTTC	1 cut(s)	539
AspLEI	GCGC	1 cut(s)	450
AsuHPI	GGTGA	4 cut(s)	50, 95, 274, 395
AsuNHI	GCTAGC	1 cut(s)	481
BaeGI	GKGCMC	1 cut(s)	749
BauI	CACGAG	1 cut(s)	224
Bbv12I	GWGCWC	2 cut(s)	496, 847
BbvI	GCAGC	3 cut(s)	465, 472, 724
BccI	CCATC	3 cut(s)	392, 749, 815
BciT130I	CCWGG	1 cut(s)	558
BclI	TGATCA	1 cut(s)	708
BcoDI	GTCTC	1 cut(s)	778
BfaI	CTAG	7 cut(s)	155, 171, 482, 593, 660, 860, 866
BisI	GCNGC	6 cut(s)	14, 328, 479, 486, 715, 738
BlsI	GCNGC	6 cut(s)	15, 329, 480, 487, 716, 739
BmcAI	AGTACT	1 cut(s)	539
Bme1390I	CCNGG	1 cut(s)	558
BmiI	GGNNCC	1 cut(s)	555
BmrFI	CCNGG	1 cut(s)	558
BmsI	GCATC	2 cut(s)	720, 768
BmtI	GCTAGC	1 cut(s)	485
Bpu10I	CCTNAGC	1 cut(s)	741
Bsa29I	ATCGAT	1 cut(s)	368
BsaHI	GRCGYC	1 cut(s)	870
BsaJI	CCNNGG	2 cut(s)	583, 618
BsaWI	WCCGGW	2 cut(s)	80, 466
BsaXI	ACNNNNNCTCC	2 cut(s)	273, 303
Bsc4I	CCNNNNNNNGG	1 cut(s)	466
Bse1I	ACTGG	1 cut(s)	96
BseAI	TCCGGA	1 cut(s)	466
BseBI	CCWGG	1 cut(s)	558
BseCI	ATCGAT	1 cut(s)	368
BseDI	CCNNGG	2 cut(s)	583, 618
BseGI	GGATG	3 cut(s)	456, 653, 759
BseLI	CCNNNNNNNGG	1 cut(s)	466
BseNI	ACTGG	1 cut(s)	96
BseRI	GAGGAG	1 cut(s)	740
BseSI	GKGCMC	1 cut(s)	749
BseXI	GCAGC	3 cut(s)	465, 472, 724
BseYI	CCCAGC	2 cut(s)	509, 838
BshFI	GGCC	2 cut(s)	5, 582
BshVI	ATCGAT	1 cut(s)	368
BsiHKAI	GWGCWC	2 cut(s)	496, 847
BsiSI	CCGG	4 cut(s)	32, 81, 467, 489
BslFI	GGGAC	1 cut(s)	513
BslI	CCNNNNNNNGG	1 cut(s)	466
BsmAI	GTCTC	1 cut(s)	778
BsmFI	GGGAC	1 cut(s)	513
BsnI	GGCC	2 cut(s)	5, 582
Bsp1286I	GDGCHC	3 cut(s)	496, 749, 847
Bsp13I	TCCGGA	1 cut(s)	466
Bsp143I	GATC	5 cut(s)	34, 53, 228, 513, 708
BspACI	CCGC	4 cut(s)	14, 328, 551, 715
BspANI	GGCC	2 cut(s)	5, 582
BspDI	ATCGAT	1 cut(s)	368
BspEI	TCCGGA	1 cut(s)	466
BspLI	GGNNCC	1 cut(s)	555
BspOI	GCTAGC	1 cut(s)	485
BspPI	GGATC	3 cut(s)	42, 61, 521
BsrI	ACTGG	1 cut(s)	96
BssECI	CCNNGG	2 cut(s)	583, 618
BssMI	GATC	5 cut(s)	34, 53, 228, 513, 708
BssNI	GRCGYC	1 cut(s)	870
BssSI	CACGAG	1 cut(s)	224
BssT1I	CCWWGG	2 cut(s)	583, 618
Bst2BI	CACGAG	1 cut(s)	224
Bst2UI	CCWGG	1 cut(s)	558
Bst4CI	ACNGT	5 cut(s)	383, 406, 520, 643, 772
BstACI	GRCGYC	1 cut(s)	870
BstC8I	GCNNGC	5 cut(s)	221, 316, 483, 735, 786
BstDEI	CTNAG	1 cut(s)	741
BstF5I	GGATG	3 cut(s)	456, 653, 759
BstHHI	GCGC	1 cut(s)	450
BstKTI	GATC	5 cut(s)	37, 56, 231, 516, 711
BstMAI	GTCTC	1 cut(s)	778
BstMBI	GATC	5 cut(s)	34, 53, 228, 513, 708
BstMWI	GCNNNNNNNGC	7 cut(s)	324, 491, 562, 579, 629, 785, 835
BstNI	CCWGG	1 cut(s)	558
BstNSI	RCATGY	3 cut(s)	318, 478, 788
BstSCI	CCNGG	1 cut(s)	556
BstSLI	GKGCMC	1 cut(s)	749
BstV1I	GCAGC	3 cut(s)	465, 472, 724
BstX2I	RGATCY	1 cut(s)	53
BstYI	RGATCY	1 cut(s)	53
Bsu15I	ATCGAT	1 cut(s)	368
BsuRI	GGCC	2 cut(s)	5, 582
BsuTUI	ATCGAT	1 cut(s)	368
BtsCI	GGATG	3 cut(s)	456, 653, 759
BtsIMutI	CAGTG	1 cut(s)	525
Cac8I	GCNNGC	5 cut(s)	221, 316, 483, 735, 786
CaiI	CAGNNNCTG	1 cut(s)	776
CfoI	GCGC	1 cut(s)	450
ClaI	ATCGAT	1 cut(s)	368
Csp6I	GTAC	3 cut(s)	162, 538, 651
CviAII	CATG	4 cut(s)	315, 320, 475, 785
CviQI	GTAC	3 cut(s)	162, 538, 651
DdeI	CTNAG	1 cut(s)	741
DpnI	GATC	5 cut(s)	36, 55, 230, 515, 710
DpnII	GATC	5 cut(s)	34, 53, 228, 513, 708
EaeI	YGGCCR	1 cut(s)	3
Eco130I	CCWWGG	2 cut(s)	583, 618
EcoRII	CCWGG	1 cut(s)	556
EcoT14I	CCWWGG	2 cut(s)	583, 618
EcoT22I	ATGCAT	1 cut(s)	567
ErhI	CCWWGG	2 cut(s)	583, 618
FaeI	CATG	4 cut(s)	318, 323, 478, 788
FaqI	GGGAC	1 cut(s)	513
FatI	CATG	4 cut(s)	314, 319, 474, 784
FauNDI	CATATG	1 cut(s)	600
FbaI	TGATCA	1 cut(s)	708
Fnu4HI	GCNGC	6 cut(s)	14, 328, 479, 486, 715, 738
FokI	GGATG	3 cut(s)	443, 640, 746
Fsp4HI	GCNGC	6 cut(s)	14, 328, 479, 486, 715, 738
FspBI	CTAG	7 cut(s)	155, 171, 482, 593, 660, 860, 866
GlaI	GCGC	1 cut(s)	449
GluI	GCNGC	6 cut(s)	14, 328, 479, 486, 715, 738
GsaI	CCCAGC	2 cut(s)	513, 842
HaeIII	GGCC	2 cut(s)	5, 582
HapII	CCGG	4 cut(s)	32, 81, 467, 489
HhaI	GCGC	1 cut(s)	450
Hin1I	GRCGYC	1 cut(s)	870
Hin1II	CATG	4 cut(s)	318, 323, 478, 788
Hin6I	GCGC	1 cut(s)	448
HinP1I	GCGC	1 cut(s)	448
HincII	GTYRAC	1 cut(s)	90
HindII	GTYRAC	1 cut(s)	90
HindIII	AAGCTT	1 cut(s)	827
HinfI	GANTC	3 cut(s)	86, 428, 698
HpaII	CCGG	4 cut(s)	32, 81, 467, 489
HphI	GGTGA	4 cut(s)	50, 95, 274, 395
Hpy166II	GTNNAC	1 cut(s)	90
Hpy188I	TCNGA	2 cut(s)	427, 820
Hpy188III	TCNNGA	2 cut(s)	467, 706
Hpy8I	GTNNAC	1 cut(s)	90
Hpy99I	CGWCG	3 cut(s)	42, 45, 725
HpyAV	CCTTC	1 cut(s)	132
HpyCH4III	ACNGT	5 cut(s)	383, 406, 520, 643, 772
HpyCH4IV	ACGT	2 cut(s)	444, 870
HpyCH4V	TGCA	5 cut(s)	176, 314, 565, 733, 784
HpyF10VI	GCNNNNNNNGC	7 cut(s)	324, 491, 562, 579, 629, 785, 835
HpyF3I	CTNAG	1 cut(s)	741
HpySE526I	ACGT	2 cut(s)	444, 870
Hsp92I	GRCGYC	1 cut(s)	870
Hsp92II	CATG	4 cut(s)	318, 323, 478, 788
HspAI	GCGC	1 cut(s)	448
Kpn2I	TCCGGA	1 cut(s)	466
Ksp22I	TGATCA	1 cut(s)	708
Kzo9I	GATC	5 cut(s)	34, 53, 228, 513, 708
LmnI	GCTCC	3 cut(s)	491, 553, 842
Lsp1109I	GCAGC	3 cut(s)	465, 472, 724
LweI	GCATC	2 cut(s)	720, 768
MaeI	CTAG	7 cut(s)	155, 171, 482, 593, 660, 860, 866
MaeII	ACGT	2 cut(s)	444, 870
MaeIII	GTNAC	7 cut(s)	98, 241, 335, 383, 406, 419, 637
MalI	GATC	5 cut(s)	36, 55, 230, 515, 710
MboI	GATC	5 cut(s)	34, 53, 228, 513, 708
MboII	GAAGA	1 cut(s)	277
MflI	RGATCY	1 cut(s)	53
MhlI	GDGCHC	3 cut(s)	496, 749, 847
MluCI	AATT	5 cut(s)	147, 183, 351, 611, 686
MlyI	GAGTC	1 cut(s)	95
MnlI	CCTC	8 cut(s)	15, 147, 151, 253, 410, 507, 718, 888
Mph1103I	ATGCAT	1 cut(s)	567
MroI	TCCGGA	1 cut(s)	466
MroXI	GAANNNNTTC	1 cut(s)	539
MseI	TTAA	3 cut(s)	111, 146, 182
MslI	CAYNNNNRTG	1 cut(s)	603
MspI	CCGG	4 cut(s)	32, 81, 467, 489
MspR9I	CCNGG	1 cut(s)	558
MvaI	CCWGG	1 cut(s)	558
MwoI	GCNNNNNNNGC	7 cut(s)	324, 491, 562, 579, 629, 785, 835
NdeI	CATATG	1 cut(s)	600
NdeII	GATC	5 cut(s)	34, 53, 228, 513, 708
NheI	GCTAGC	1 cut(s)	481
NlaIII	CATG	4 cut(s)	318, 323, 478, 788
NlaIV	GGNNCC	1 cut(s)	555
NmeAIII	GCCGAG	1 cut(s)	31
NmuCI	GTSAC	3 cut(s)	335, 383, 637
NsiI	ATGCAT	1 cut(s)	567
NspI	RCATGY	3 cut(s)	318, 478, 788
PaeI	GCATGC	2 cut(s)	318, 788
PdmI	GAANNNNTTC	1 cut(s)	539
PfeI	GAWTC	2 cut(s)	428, 698
PkrI	GCNGC	6 cut(s)	15, 329, 480, 487, 716, 739
PleI	GAGTC	1 cut(s)	94
PpsI	GAGTC	1 cut(s)	94
PshBI	ATTAAT	1 cut(s)	182
Psp6I	CCWGG	1 cut(s)	556
PspFI	CCCAGC	2 cut(s)	509, 838
PspGI	CCWGG	1 cut(s)	556
PspN4I	GGNNCC	1 cut(s)	555
PstNI	CAGNNNCTG	1 cut(s)	776
PsuI	RGATCY	1 cut(s)	53
RsaI	GTAC	3 cut(s)	163, 539, 652
RsaNI	GTAC	3 cut(s)	162, 538, 651
RseI	CAYNNNNRTG	1 cut(s)	603
SaqAI	TTAA	3 cut(s)	111, 146, 182
SatI	GCNGC	6 cut(s)	14, 328, 479, 486, 715, 738
Sau3AI	GATC	5 cut(s)	34, 53, 228, 513, 708
ScaI	AGTACT	1 cut(s)	539
SchI	GAGTC	1 cut(s)	95
ScrFI	CCNGG	1 cut(s)	558
SduI	GDGCHC	3 cut(s)	496, 749, 847
SfaNI	GCATC	2 cut(s)	720, 768
SmiMI	CAYNNNNRTG	1 cut(s)	603
SphI	GCATGC	2 cut(s)	318, 788
Sse9I	AATT	5 cut(s)	147, 183, 351, 611, 686
SsiI	CCGC	4 cut(s)	14, 328, 551, 715
SspI	AATATT	1 cut(s)	180
SspMI	CTAG	7 cut(s)	155, 171, 482, 593, 660, 860, 866
StyD4I	CCNGG	1 cut(s)	556
StyI	CCWWGG	2 cut(s)	583, 618
TaaI	ACNGT	5 cut(s)	383, 406, 520, 643, 772
TaiI	ACGT	2 cut(s)	447, 873
TaqI	TCGA	2 cut(s)	37, 368
TasI	AATT	5 cut(s)	147, 183, 351, 611, 686
TatI	WGTACW	2 cut(s)	537, 650
TauI	GCSGC	3 cut(s)	16, 330, 717
TfiI	GAWTC	2 cut(s)	428, 698
Tru1I	TTAA	3 cut(s)	111, 146, 182
Tru9I	TTAA	3 cut(s)	111, 146, 182
TscAI	CASTG	1 cut(s)	525
TseFI	GTSAC	3 cut(s)	335, 383, 637
TseI	GCWGC	3 cut(s)	478, 485, 737
Tsp45I	GTSAC	3 cut(s)	335, 383, 637
TspDTI	ATGAA	1 cut(s)	687
TspGWI	ACGGA	1 cut(s)	429
TspRI	CASTG	1 cut(s)	525
VspI	ATTAAT	1 cut(s)	182
XapI	RAATTY	2 cut(s)	351, 611
XceI	RCATGY	3 cut(s)	318, 478, 788
XmnI	GAANNNNTTC	1 cut(s)	539
XspI	CTAG	7 cut(s)	155, 171, 482, 593, 660, 860, 866
ZraI	GACGTC	1 cut(s)	871
ZrmI	AGTACT	1 cut(s)	539
Zsp2I	ATGCAT	1 cut(s)	567

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.