Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0005946

Physical Location & Seq

Genomic Coordinates Forward (+)

30909060 .. 30912570

Gene Structure 3511 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1308700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGGTCGCCAATGAGCGCTACATTGTTCATTTCCCCGAGAACCTGCCACTTGATGCTGGTGCTCCTCTACTATGTGCTGGGATCACAGTGTATAGTCCCCTGAGATATTTTGGCTTATCTGAGCCTGGTAAGCATGTTGGCATTGTAGGCCTTGGCGGGCTTGCTCACACCGGTGTGAAATTTGCCAAGGCGTTTGGGTCAAAAGCTGCCATAGGCACATTGGATGGCATCATCGACACAGTCTCAGCTGCGCATCCCATTGTGCCCTTACTTGGTCTTTTGAAGCCCCATGGGAAGCTTATTCTGGTGGGTGTACCAGAAAAGTCACTAGATCTCCATGTGTTTCCTTTAATCATGGGAAGAAAGTCTGTGGCCGGTAGTGGAATCGGAGGCATGAAGGAGACCCAGGAAATGATTGATTTTGCAGCAAAACACAACATAACGGCGGAGGTTGAAGTTAACTCAATGGATTACGTGAACACAGCAATGGAGCGTCTTGCTAAGAATGATGTAAGATACCGATTTGTCATTGATGTTGCAAACACACTGGCTGCTAGCGAAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009987 GO:0019438 GO:0019748 GO:0044237 GO:0044249 GO:0044550 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

189

Amino Acids

19.92

Weight (kDa)

6.65

Isoelectric Point (pI)

15.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_zinc_N	PF00107	73 - 143	2.4e-09	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005946)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37970 AT4G37970 AT4G37970 AT4G37970
malus_domestica	MD01G1043100.v1.1 MD15G1308500.v1.1 MD15G1308700.v1.1
prunus_persica	Prupe.6G208100_v2.0.a1 Prupe.6G208200_v2.0.a1 Prupe.6G208300_v2.0.a1
pyrus_communis	pycom01g07030 pycom15g27280
rosa_chinensis	RchiOBHm_Chr2g0110451 RchiOBHm_Chr2g0110461
rosa_laevigata	RLG00000017807
rosa_multiflora	Rmu_sc0000389.1_g000001 Rmu_sc0001393.1_g000001 Rmu_sc0020342.1_g000011 Rmu_sc0027350.1_g000001 Rmu_sc0038245.1_g000001
rosa_roxburghii	Rroxscaffold_2G00133390
rosa_rugosa	Rorug02G0167900 Rorug02G0168000
rosa_samantha	Rh2BG229100 Rh2CG221300 Rh2CG221400
rosa_wichuraiana	Rw2G016950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	252
Acc36I	ACCTGC	1 cut(s)	51
AciI	CCGC	2 cut(s)	156, 446
AclWI	GGATC	1 cut(s)	89
AcoI	YGGCCR	1 cut(s)	372
AcsI	RAATTY	1 cut(s)	179
AfaI	GTAC	1 cut(s)	315
AfeI	AGCGCT	1 cut(s)	17
AfiI	CCNNNNNNNGG	1 cut(s)	272
AgeI	ACCGGT	1 cut(s)	170
AgsI	TTSAA	2 cut(s)	283, 455
AjnI	CCWGG	2 cut(s)	124, 405
AleI	CACNNNNGTG	2 cut(s)	171, 173
AluBI	AGCT	4 cut(s)	206, 248, 298, 563
AluI	AGCT	4 cut(s)	206, 248, 298, 563
Alw21I	GWGCWC	1 cut(s)	64
Alw26I	GTCTC	2 cut(s)	247, 395
AlwI	GGATC	1 cut(s)	89
Ama87I	CYCGRG	1 cut(s)	35
Aor51HI	AGCGCT	1 cut(s)	17
AoxI	GGCC	2 cut(s)	148, 372
ApeKI	GCWGC	4 cut(s)	206, 248, 425, 551
ApoI	RAATTY	1 cut(s)	179
AsiGI	ACCGGT	1 cut(s)	170
AspLEI	GCGC	2 cut(s)	18, 253
AsuNHI	GCTAGC	1 cut(s)	554
AvaI	CYCGRG	1 cut(s)	35
BaeGI	GKGCMC	1 cut(s)	267
Bbv12I	GWGCWC	1 cut(s)	64
BbvI	GCAGC	4 cut(s)	193, 235, 437, 538
BccI	CCATC	1 cut(s)	218
BceAI	ACGGC	1 cut(s)	459
BciT130I	CCWGG	2 cut(s)	126, 407
BcoDI	GTCTC	2 cut(s)	247, 395
BfaI	CTAG	2 cut(s)	329, 555
BfoI	RGCGCY	1 cut(s)	19
BfuAI	ACCTGC	1 cut(s)	51
BglII	AGATCT	1 cut(s)	331
BisI	GCNGC	4 cut(s)	207, 249, 426, 552
BlsI	GCNGC	4 cut(s)	208, 250, 427, 553
Bme1390I	CCNGG	2 cut(s)	126, 407
BmeT110I	CYCGRG	1 cut(s)	35
BmrFI	CCNGG	2 cut(s)	126, 407
BmsI	GCATC	3 cut(s)	43, 237, 262
BmtI	GCTAGC	1 cut(s)	558
BsaAI	YACGTR	1 cut(s)	475
BsaI	GGTCTC	1 cut(s)	395
BsaJI	CCNNGG	4 cut(s)	151, 186, 289, 405
BsaWI	WCCGGW	1 cut(s)	170
BsaXI	ACNNNNNCTCC	2 cut(s)	318, 348
Bsc4I	CCNNNNNNNGG	1 cut(s)	272
Bse118I	RCCGGY	2 cut(s)	170, 374
Bse1I	ACTGG	1 cut(s)	552
Bse3DI	GCAATG	1 cut(s)	492
BseBI	CCWGG	2 cut(s)	126, 407
BseDI	CCNNGG	4 cut(s)	151, 186, 289, 405
BseGI	GGATG	2 cut(s)	229, 253
BseLI	CCNNNNNNNGG	1 cut(s)	272
BseMI	GCAATG	1 cut(s)	492
BseMII	CTCAG	3 cut(s)	92, 111, 258
BseNI	ACTGG	1 cut(s)	552
BseRI	GAGGAG	1 cut(s)	54
BseSI	GKGCMC	1 cut(s)	267
BseXI	GCAGC	4 cut(s)	193, 235, 437, 538
BseYI	CCCAGC	1 cut(s)	77
BshFI	GGCC	2 cut(s)	150, 374
BshTI	ACCGGT	1 cut(s)	170
BsiHKAI	GWGCWC	1 cut(s)	64
BsiHKCI	CYCGRG	1 cut(s)	35
BsiSI	CCGG	2 cut(s)	171, 375
BslFI	GGGAC	1 cut(s)	81
BslI	CCNNNNNNNGG	1 cut(s)	272
BsmAI	GTCTC	2 cut(s)	247, 395
BsmFI	GGGAC	1 cut(s)	81
BsnI	GGCC	2 cut(s)	150, 374
Bso31I	GGTCTC	1 cut(s)	395
BsoBI	CYCGRG	1 cut(s)	35
Bsp1286I	GDGCHC	2 cut(s)	64, 267
Bsp143I	GATC	2 cut(s)	81, 331
Bsp19I	CCATGG	1 cut(s)	289
BspACI	CCGC	2 cut(s)	156, 446
BspANI	GGCC	2 cut(s)	150, 374
BspCNI	CTCAG	3 cut(s)	93, 112, 257
BspMI	ACCTGC	1 cut(s)	51
BspOI	GCTAGC	1 cut(s)	558
BspPI	GGATC	1 cut(s)	89
BspTNI	GGTCTC	1 cut(s)	395
BsrDI	GCAATG	1 cut(s)	492
BsrFI	RCCGGY	2 cut(s)	170, 374
BsrI	ACTGG	1 cut(s)	552
BssAI	RCCGGY	2 cut(s)	170, 374
BssECI	CCNNGG	4 cut(s)	151, 186, 289, 405
BssMI	GATC	2 cut(s)	81, 331
BssT1I	CCWWGG	3 cut(s)	151, 186, 289
Bst2UI	CCWGG	2 cut(s)	126, 407
Bst4CI	ACNGT	2 cut(s)	88, 241
BstBAI	YACGTR	1 cut(s)	475
BstC8I	GCNNGC	3 cut(s)	158, 162, 556
BstDEI	CTNAG	4 cut(s)	101, 120, 244, 501
BstDSI	CCRYGG	1 cut(s)	289
BstF5I	GGATG	2 cut(s)	229, 253
BstH2I	RGCGCY	1 cut(s)	19
BstHHI	GCGC	2 cut(s)	18, 253
BstKTI	GATC	2 cut(s)	84, 334
BstMAI	GTCTC	2 cut(s)	247, 395
BstMBI	GATC	2 cut(s)	81, 331
BstMWI	GCNNNNNNNGC	3 cut(s)	130, 147, 560
BstNI	CCWGG	2 cut(s)	126, 407
BstNSI	RCATGY	1 cut(s)	137
BstSCI	CCNGG	2 cut(s)	124, 405
BstSLI	GKGCMC	1 cut(s)	267
BstV1I	GCAGC	4 cut(s)	193, 235, 437, 538
BstX2I	RGATCY	1 cut(s)	331
BstYI	RGATCY	1 cut(s)	331
BsuRI	GGCC	2 cut(s)	150, 374
BtgI	CCRYGG	1 cut(s)	289
BtsCI	GGATG	2 cut(s)	229, 253
BtsIMutI	CAGTG	2 cut(s)	93, 545
BveI	ACCTGC	1 cut(s)	51
Cac8I	GCNNGC	3 cut(s)	158, 162, 556
CfoI	GCGC	2 cut(s)	18, 253
Cfr10I	RCCGGY	2 cut(s)	170, 374
CseI	GACGC	1 cut(s)	482
Csp6I	GTAC	1 cut(s)	314
CspAI	ACCGGT	1 cut(s)	170
CviAII	CATG	5 cut(s)	134, 290, 338, 355, 394
CviQI	GTAC	1 cut(s)	314
DdeI	CTNAG	4 cut(s)	101, 120, 244, 501
DpnI	GATC	2 cut(s)	83, 333
DpnII	GATC	2 cut(s)	81, 331
EaeI	YGGCCR	1 cut(s)	372
EciI	GGCGGA	1 cut(s)	461
Eco130I	CCWWGG	3 cut(s)	151, 186, 289
Eco147I	AGGCCT	1 cut(s)	150
Eco31I	GGTCTC	1 cut(s)	395
Eco47III	AGCGCT	1 cut(s)	17
Eco88I	CYCGRG	1 cut(s)	35
EcoRII	CCWGG	2 cut(s)	124, 405
EcoT14I	CCWWGG	3 cut(s)	151, 186, 289
ErhI	CCWWGG	3 cut(s)	151, 186, 289
FaeI	CATG	5 cut(s)	137, 293, 341, 358, 397
FaiI	YATR	9 cut(s)	73, 93, 135, 212, 291, 339, 356, 395, 440
FaqI	GGGAC	1 cut(s)	81
FatI	CATG	5 cut(s)	133, 289, 337, 354, 393
FauI	CCCGC	1 cut(s)	149
Fnu4HI	GCNGC	4 cut(s)	207, 249, 426, 552
FokI	GGATG	2 cut(s)	236, 240
Fsp4HI	GCNGC	4 cut(s)	207, 249, 426, 552
FspBI	CTAG	2 cut(s)	329, 555
FspI	TGCGCA	1 cut(s)	252
GlaI	GCGC	2 cut(s)	17, 252
GluI	GCNGC	4 cut(s)	207, 249, 426, 552
GsaI	CCCAGC	1 cut(s)	81
HaeII	RGCGCY	1 cut(s)	19
HaeIII	GGCC	2 cut(s)	150, 374
HapII	CCGG	2 cut(s)	171, 375
HgaI	GACGC	1 cut(s)	482
HhaI	GCGC	2 cut(s)	18, 253
Hin1II	CATG	5 cut(s)	137, 293, 341, 358, 397
Hin6I	GCGC	2 cut(s)	16, 251
HinP1I	GCGC	2 cut(s)	16, 251
HincII	GTYRAC	1 cut(s)	460
HindII	GTYRAC	1 cut(s)	460
HindIII	AAGCTT	2 cut(s)	296, 561
HinfI	GANTC	1 cut(s)	384
HpaI	GTTAAC	1 cut(s)	460
HpaII	CCGG	2 cut(s)	171, 375
Hpy166II	GTNNAC	3 cut(s)	314, 460, 478
Hpy188I	TCNGA	2 cut(s)	121, 389
Hpy8I	GTNNAC	3 cut(s)	314, 460, 478
HpyAV	CCTTC	1 cut(s)	391
HpyCH4III	ACNGT	2 cut(s)	88, 241
HpyCH4IV	ACGT	1 cut(s)	474
HpyCH4V	TGCA	2 cut(s)	425, 539
HpyF10VI	GCNNNNNNNGC	3 cut(s)	130, 147, 560
HpyF3I	CTNAG	4 cut(s)	101, 120, 244, 501
HpySE526I	ACGT	1 cut(s)	474
Hsp92II	CATG	5 cut(s)	137, 293, 341, 358, 397
HspAI	GCGC	2 cut(s)	16, 251
KspAI	GTTAAC	1 cut(s)	460
Kzo9I	GATC	2 cut(s)	81, 331
LmnI	GCTCC	2 cut(s)	67, 490
Lsp1109I	GCAGC	4 cut(s)	193, 235, 437, 538
LweI	GCATC	3 cut(s)	43, 237, 262
MaeI	CTAG	2 cut(s)	329, 555
MaeII	ACGT	1 cut(s)	474
MaeIII	GTNAC	1 cut(s)	324
MalI	GATC	2 cut(s)	83, 333
MboI	GATC	2 cut(s)	81, 331
MboII	GAAGA	1 cut(s)	372
MflI	RGATCY	1 cut(s)	331
MhlI	GDGCHC	2 cut(s)	64, 267
MluCI	AATT	1 cut(s)	179
MnlI	CCTC	3 cut(s)	75, 383, 442
MseI	TTAA	2 cut(s)	350, 459
MslI	CAYNNNNRTG	3 cut(s)	171, 173, 485
MspA1I	CMGCKG	1 cut(s)	248
MspI	CCGG	2 cut(s)	171, 375
MspR9I	CCNGG	2 cut(s)	126, 407
MvaI	CCWGG	2 cut(s)	126, 407
MwoI	GCNNNNNNNGC	3 cut(s)	130, 147, 560
NcoI	CCATGG	1 cut(s)	289
NdeII	GATC	2 cut(s)	81, 331
NheI	GCTAGC	1 cut(s)	554
NlaIII	CATG	5 cut(s)	137, 293, 341, 358, 397
NmuCI	GTSAC	1 cut(s)	324
NsbI	TGCGCA	1 cut(s)	252
NspI	RCATGY	1 cut(s)	137
OliI	CACNNNNGTG	2 cut(s)	171, 173
PceI	AGGCCT	1 cut(s)	150
PfeI	GAWTC	1 cut(s)	384
PflFI	GACNNNGTC	1 cut(s)	239
PinAI	ACCGGT	1 cut(s)	170
PkrI	GCNGC	4 cut(s)	208, 250, 427, 553
Ppu21I	YACGTR	1 cut(s)	475
Psp6I	CCWGG	2 cut(s)	124, 405
PspFI	CCCAGC	1 cut(s)	77
PspGI	CCWGG	2 cut(s)	124, 405
PsuI	RGATCY	1 cut(s)	331
PsyI	GACNNNGTC	1 cut(s)	239
PvuII	CAGCTG	1 cut(s)	248
RsaI	GTAC	1 cut(s)	315
RsaNI	GTAC	1 cut(s)	314
RseI	CAYNNNNRTG	3 cut(s)	171, 173, 485
SaqAI	TTAA	2 cut(s)	350, 459
SatI	GCNGC	4 cut(s)	207, 249, 426, 552
Sau3AI	GATC	2 cut(s)	81, 331
ScrFI	CCNGG	2 cut(s)	126, 407
SduI	GDGCHC	2 cut(s)	64, 267
SetI	ASST	7 cut(s)	45, 208, 250, 300, 453, 477, 565
SfaNI	GCATC	3 cut(s)	43, 237, 262
SgrAI	CRCCGGYG	1 cut(s)	170
SmiMI	CAYNNNNRTG	3 cut(s)	171, 173, 485
Sse9I	AATT	1 cut(s)	179
SseBI	AGGCCT	1 cut(s)	150
SsiI	CCGC	2 cut(s)	156, 446
SspMI	CTAG	2 cut(s)	329, 555
StuI	AGGCCT	1 cut(s)	150
StyD4I	CCNGG	2 cut(s)	124, 405
StyI	CCWWGG	3 cut(s)	151, 186, 289
TaaI	ACNGT	2 cut(s)	88, 241
TaiI	ACGT	1 cut(s)	477
TaqI	TCGA	1 cut(s)	234
TasI	AATT	1 cut(s)	179
TfiI	GAWTC	1 cut(s)	384
Tru1I	TTAA	2 cut(s)	350, 459
Tru9I	TTAA	2 cut(s)	350, 459
TscAI	CASTG	2 cut(s)	93, 552
TseFI	GTSAC	1 cut(s)	324
TseI	GCWGC	4 cut(s)	206, 248, 425, 551
Tsp45I	GTSAC	1 cut(s)	324
TspDTI	ATGAA	2 cut(s)	17, 410
TspRI	CASTG	2 cut(s)	93, 552
Tth111I	GACNNNGTC	1 cut(s)	239
XapI	RAATTY	1 cut(s)	179
XceI	RCATGY	1 cut(s)	137
XcmI	CCANNNNNNNNNTGG	1 cut(s)	217
XspI	CTAG	2 cut(s)	329, 555

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.