AT4G38090

Uncharacterized protein family UPF0029

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0003589
Physical Location & Seq
Reverse (-)
17883679 .. 17884821
1143 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G38090.2

Sequence Viewer

Length: 705 bp
ATGTGGGTGGGCGTACCGGTAGCAGCAGCAGTAACCACCGTCGGCGGCCGCAGAATACCGGTGTTAGTGGCTGCATCAGGCAAGAGGTCGATGGCTTCGAATTCGGGTTCATTCACGACACTAAAAGAAACCGTATCCGTGGAGAAAGAGATAAAGAAGAGCAAGTTCATCGCAATCGCTGGACCAATCTCCTCCGAGCAATCAGCTCAAATGTTCCTCTCTCAGGTCCGTGATCCTCGCGCTTCTCACAATTGCTGGGCTTATAAGATCGGTGATCATCACCATCGATGTAGCGATGATGGTGAGCCATCTGGCACAGCAGGGAAGCCGATTCAGTCTGCTATTCTCTCTTCTGGATTAGACAGAGTTATGGTTGTTGTCATTAGGTATTTTGGGGGAATCAAACTTGGAACTGGAGGTCTTGTTAGAGCATATGGTGGTGTTACATCTGATTGCTTGAAAACTGCTCCTTCTTGTCTGGTCAAGTCCAAAGTTCAAATGGGAGTTGAGGTCACATTTGATCTTTTAGGTGTTCTTTACAATCAGCTGCAATCGTGTCACGCTGAAGACATCAAGGAAGACTATGATACTGGTAAAGATGGTACTGCAATGGTTTCTTTCAAGGTTGAGTTTGACCTTGTTGATAAATTAGAGGATGCTATCAAATCAAACTGTAGACGAGACCTTGTCTTTTACAAAACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UPF0029

Protein Analysis

234

Amino Acids

25.21

Weight (kDa)

8.68

Isoelectric Point (pI)

38.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Impact_N PF01205 52 - 153 3.9e-35 Impact N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 264
AccI GTMKAC 1 cut(s) 676
AccII CGCG 1 cut(s) 240
AciI CCGC 2 cut(s) 45, 49
AclWI GGATC 1 cut(s) 227
AcoI YGGCCR 1 cut(s) 46
AcsI RAATTY 1 cut(s) 100
AcuI CTGAAG 1 cut(s) 585
AfaI GTAC 2 cut(s) 15, 604
AfiI CCNNNNNNNGG 1 cut(s) 223
AgeI ACCGGT 2 cut(s) 16, 58
AgsI TTSAA 3 cut(s) 460, 497, 622
AluBI AGCT 2 cut(s) 206, 547
AluI AGCT 2 cut(s) 206, 547
Alw26I GTCTC 1 cut(s) 675
AlwI GGATC 1 cut(s) 227
AoxI GGCC 1 cut(s) 46
ApeKI GCWGC 4 cut(s) 23, 26, 71, 547
ApoI RAATTY 1 cut(s) 100
AsiGI ACCGGT 2 cut(s) 16, 58
AspLEI GCGC 1 cut(s) 242
AspS9I GGNCC 2 cut(s) 182, 226
AsuHPI GGTGA 3 cut(s) 272, 284, 314
AsuII TTCGAA 1 cut(s) 98
AvaII GGWCC 2 cut(s) 182, 226
BbsI GAAGAC 2 cut(s) 573, 585
BbvI GCAGC 4 cut(s) 35, 38, 58, 534
BccI CCATC 5 cut(s) 85, 291, 293, 316, 593
BcgI CGANNNNNNTGC 2 cut(s) 151, 185
BciVI GTATCC 1 cut(s) 145
BclI TGATCA 1 cut(s) 274
BcoDI GTCTC 1 cut(s) 675
BfmI CTRYAG 1 cut(s) 673
BfuI GTATCC 1 cut(s) 145
BisI GCNGC 6 cut(s) 24, 27, 46, 49, 72, 548
BlsI GCNGC 6 cut(s) 25, 28, 47, 50, 73, 549
Bme18I GGWCC 2 cut(s) 182, 226
BmgT120I GGNCC 2 cut(s) 182, 226
BmsI GCATC 2 cut(s) 83, 646
BpiI GAAGAC 2 cut(s) 573, 585
BpmI CTGGAG 1 cut(s) 435
Bpu14I TTCGAA 1 cut(s) 98
Bsa29I ATCGAT 1 cut(s) 286
BsaI GGTCTC 1 cut(s) 675
BsaJI CCNNGG 1 cut(s) 138
BsaWI WCCGGW 2 cut(s) 16, 58
BsaXI ACNNNNNCTCC 4 cut(s) 408, 438, 495, 525
Bsc4I CCNNNNNNNGG 1 cut(s) 223
Bse118I RCCGGY 2 cut(s) 16, 58
Bse1I ACTGG 2 cut(s) 418, 595
Bse3DI GCAATG 1 cut(s) 615
BseCI ATCGAT 1 cut(s) 286
BseDI CCNNGG 1 cut(s) 138
BseGI GGATG 1 cut(s) 661
BseLI CCNNNNNNNGG 1 cut(s) 223
BseMI GCAATG 1 cut(s) 615
BseMII CTCAG 1 cut(s) 236
BseNI ACTGG 2 cut(s) 418, 595
BseRI GAGGAG 1 cut(s) 181
BseX3I CGGCCG 1 cut(s) 46
BseXI GCAGC 4 cut(s) 35, 38, 58, 534
BseYI CCCAGC 1 cut(s) 255
Bsh1236I CGCG 1 cut(s) 240
Bsh1285I CGRYCG 1 cut(s) 49
BshFI GGCC 1 cut(s) 48
BshTI ACCGGT 2 cut(s) 16, 58
BshVI ATCGAT 1 cut(s) 286
BsiEI CGRYCG 1 cut(s) 49
BsiSI CCGG 2 cut(s) 17, 59
BslI CCNNNNNNNGG 1 cut(s) 223
BsmAI GTCTC 1 cut(s) 675
BsnI GGCC 1 cut(s) 48
Bso31I GGTCTC 1 cut(s) 675
Bsp119I TTCGAA 1 cut(s) 98
Bsp143I GATC 4 cut(s) 232, 267, 274, 520
BspACI CCGC 2 cut(s) 45, 49
BspANI GGCC 1 cut(s) 48
BspCNI CTCAG 1 cut(s) 235
BspDI ATCGAT 1 cut(s) 286
BspFNI CGCG 1 cut(s) 240
BspPI GGATC 1 cut(s) 227
BspQI GCTCTTC 1 cut(s) 152
BspT104I TTCGAA 1 cut(s) 98
BspTNI GGTCTC 1 cut(s) 675
BsrDI GCAATG 1 cut(s) 615
BsrFI RCCGGY 2 cut(s) 16, 58
BsrI ACTGG 2 cut(s) 418, 595
BssAI RCCGGY 2 cut(s) 16, 58
BssECI CCNNGG 1 cut(s) 138
BssMI GATC 4 cut(s) 232, 267, 274, 520
Bst4CI ACNGT 3 cut(s) 40, 133, 674
Bst6I CTCTTC 2 cut(s) 152, 355
BstBI TTCGAA 1 cut(s) 98
BstDEI CTNAG 2 cut(s) 222, 702
BstDSI CCRYGG 1 cut(s) 138
BstENI CCTNNNNNAGG 1 cut(s) 221
BstF5I GGATG 1 cut(s) 661
BstFNI CGCG 1 cut(s) 240
BstHHI GCGC 1 cut(s) 242
BstKTI GATC 4 cut(s) 235, 270, 277, 523
BstMAI GTCTC 1 cut(s) 675
BstMBI GATC 4 cut(s) 232, 267, 274, 520
BstMCI CGRYCG 1 cut(s) 49
BstSFI CTRYAG 1 cut(s) 673
BstUI CGCG 1 cut(s) 240
BstV1I GCAGC 4 cut(s) 35, 38, 58, 534
BstV2I GAAGAC 2 cut(s) 573, 585
BstZI CGGCCG 1 cut(s) 46
Bsu15I ATCGAT 1 cut(s) 286
BsuI GTATCC 1 cut(s) 145
BsuRI GGCC 1 cut(s) 48
BsuTUI ATCGAT 1 cut(s) 286
BtgI CCRYGG 1 cut(s) 138
BtgZI GCGATG 2 cut(s) 154, 309
BtsCI GGATG 1 cut(s) 661
CciNI GCGGCCGC 1 cut(s) 46
CfoI GCGC 1 cut(s) 242
Cfr10I RCCGGY 2 cut(s) 16, 58
Cfr13I GGNCC 2 cut(s) 182, 226
ClaI ATCGAT 1 cut(s) 286
Csp6I GTAC 2 cut(s) 14, 603
CspAI ACCGGT 2 cut(s) 16, 58
CviJI RGCY 8 cut(s) 48, 71, 95, 206, 260, 307, 328, 547
CviKI_1 RGCY 8 cut(s) 48, 71, 95, 206, 260, 307, 328, 547
CviQI GTAC 2 cut(s) 14, 603
DdeI CTNAG 2 cut(s) 222, 702
DpnI GATC 4 cut(s) 234, 269, 276, 522
DpnII GATC 4 cut(s) 232, 267, 274, 520
EaeI YGGCCR 1 cut(s) 46
EagI CGGCCG 1 cut(s) 46
Eam1104I CTCTTC 2 cut(s) 152, 355
EarI CTCTTC 2 cut(s) 152, 355
EclXI CGGCCG 1 cut(s) 46
Eco31I GGTCTC 1 cut(s) 675
Eco47I GGWCC 2 cut(s) 182, 226
Eco52I CGGCCG 1 cut(s) 46
Eco57I CTGAAG 1 cut(s) 585
EcoNI CCTNNNNNAGG 1 cut(s) 221
EcoRI GAATTC 1 cut(s) 100
FaiI YATR 5 cut(s) 264, 371, 433, 435, 585
FauNDI CATATG 1 cut(s) 433
FbaI TGATCA 1 cut(s) 274
FblI GTMKAC 1 cut(s) 676
Fnu4HI GCNGC 6 cut(s) 24, 27, 46, 49, 72, 548
FokI GGATG 1 cut(s) 668
Fsp4HI GCNGC 6 cut(s) 24, 27, 46, 49, 72, 548
GlaI GCGC 1 cut(s) 241
GluI GCNGC 6 cut(s) 24, 27, 46, 49, 72, 548
GsaI CCCAGC 1 cut(s) 259
GsuI CTGGAG 1 cut(s) 435
HaeIII GGCC 1 cut(s) 48
HapII CCGG 2 cut(s) 17, 59
HhaI GCGC 1 cut(s) 242
Hin6I GCGC 1 cut(s) 240
HinP1I GCGC 1 cut(s) 240
HinfI GANTC 2 cut(s) 331, 399
HpaII CCGG 2 cut(s) 17, 59
HphI GGTGA 3 cut(s) 272, 284, 314
Hpy166II GTNNAC 1 cut(s) 677
Hpy188I TCNGA 2 cut(s) 196, 451
Hpy188III TCNNGA 2 cut(s) 115, 354
Hpy8I GTNNAC 1 cut(s) 677
Hpy99I CGWCG 1 cut(s) 44
HpyAV CCTTC 1 cut(s) 480
HpyCH4III ACNGT 3 cut(s) 40, 133, 674
HpyCH4V TGCA 3 cut(s) 74, 550, 608
HpyF3I CTNAG 2 cut(s) 222, 702
HspAI GCGC 1 cut(s) 240
Ksp22I TGATCA 1 cut(s) 274
Kzo9I GATC 4 cut(s) 232, 267, 274, 520
LguI GCTCTTC 1 cut(s) 152
LmnI GCTCC 1 cut(s) 472
Lsp1109I GCAGC 4 cut(s) 35, 38, 58, 534
LweI GCATC 2 cut(s) 83, 646
MaeIII GTNAC 4 cut(s) 31, 442, 511, 557
MalI GATC 4 cut(s) 234, 269, 276, 522
MboI GATC 4 cut(s) 232, 267, 274, 520
MboII GAAGA 4 cut(s) 169, 342, 578, 590
MfeI CAATTG 1 cut(s) 250
MluCI AATT 3 cut(s) 100, 250, 647
MnlI CCTC 7 cut(s) 78, 202, 227, 246, 410, 502, 646
MspA1I CMGCKG 1 cut(s) 547
MspI CCGG 2 cut(s) 17, 59
MunI CAATTG 1 cut(s) 250
MvnI CGCG 1 cut(s) 240
NdeI CATATG 1 cut(s) 433
NdeII GATC 4 cut(s) 232, 267, 274, 520
NmuCI GTSAC 2 cut(s) 511, 557
NotI GCGGCCGC 1 cut(s) 46
NspV TTCGAA 1 cut(s) 98
PciSI GCTCTTC 1 cut(s) 152
PcsI WCGNNNNNNNCGW 1 cut(s) 95
PfeI GAWTC 2 cut(s) 331, 399
PflFI GACNNNGTC 1 cut(s) 686
PinAI ACCGGT 2 cut(s) 16, 58
PkrI GCNGC 6 cut(s) 25, 28, 47, 50, 73, 549
PsiI TTATAA 1 cut(s) 264
PspFI CCCAGC 1 cut(s) 255
PspPI GGNCC 2 cut(s) 182, 226
PsyI GACNNNGTC 1 cut(s) 686
PvuII CAGCTG 1 cut(s) 547
RsaI GTAC 2 cut(s) 15, 604
RsaNI GTAC 2 cut(s) 14, 603
SapI GCTCTTC 1 cut(s) 152
SatI GCNGC 6 cut(s) 24, 27, 46, 49, 72, 548
Sau3AI GATC 4 cut(s) 232, 267, 274, 520
Sau96I GGNCC 2 cut(s) 182, 226
SfaNI GCATC 2 cut(s) 83, 646
SfcI CTRYAG 1 cut(s) 673
SfuI TTCGAA 1 cut(s) 98
SinI GGWCC 2 cut(s) 182, 226
Sse9I AATT 3 cut(s) 100, 250, 647
SsiI CCGC 2 cut(s) 45, 49
TaaI ACNGT 3 cut(s) 40, 133, 674
TaqI TCGA 3 cut(s) 89, 98, 286
TasI AATT 3 cut(s) 100, 250, 647
TauI GCSGC 2 cut(s) 48, 51
TfiI GAWTC 2 cut(s) 331, 399
TseFI GTSAC 2 cut(s) 511, 557
TseI GCWGC 4 cut(s) 23, 26, 71, 547
Tsp45I GTSAC 2 cut(s) 511, 557
TspDTI ATGAA 2 cut(s) 99, 157
TspGWI ACGGA 2 cut(s) 127, 218
Tth111I GACNNNGTC 1 cut(s) 686
VpaK11BI GGWCC 2 cut(s) 182, 226
XagI CCTNNNNNAGG 1 cut(s) 221
XapI RAATTY 1 cut(s) 100
XcmI CCANNNNNNNNNTGG 1 cut(s) 496
XmiI GTMKAC 1 cut(s) 676
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.