Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0003589

Physical Location & Seq

Genomic Coordinates Reverse (-)

15778828 .. 15779867

Gene Structure 1040 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0173400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGGCCTGTTTACACACAATGTACAACTCAGAGCACAAGGGTCAGTACTGTAATGGTGGTAGTGGTAGTGGTGGTGCTCCAATGAGCCCTAGAATTTCATTCTCTAATGACTTTGCTGATGCGCAACATGTGATTAAGCATGAGAGGAGCTCAAGGGAGGCACCAGTGTCTTCAGATTTTGAGTTCTCAGTGACCAACTACTCCATGATGAGTGCTGATGAGCTTTTCTCTAAGGGGAGGTTGCTGCCTTACAAGGGAAGCAACAAGAGCCAGATGCAGAGGGGTACTACCACTCTTAGAGACGAGCTTCTTGTGGAGGATCGGGAGGACGACGTGTCGTTTCATAGGCCGCCGAAGGGGTCATCGACGAGGTGGAAGGGGCTTCTGGGGCGGAAGAGGACTGCCCACATTGGGTCCAAGAAAGCTGAGAGAGGTAGTGATGGCTCTTCTATGGAAGGAAGAAGGTCTGGCCTTGTGCATGAGAGTTCTTCTTCACAGGAGGTGTTGAATGAAGGAGGGTCAAGTTGGAGGGGGTTTGAGATTGGAATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

183

Amino Acids

20.13

Weight (kDa)

8.57

Isoelectric Point (pI)

54.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003589)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38090 AT4G38090 AT4G38090
fragaria_vesca	FvH4_1g19800 FvH4_1g19810 FvH4_1g19820 FvH4_1g19820 FvH4_1g19820 FvH4_1g19820
malus_domestica	MD15G1314800.v1.1
prunus_persica	Prupe.6G197200_v2.0.a1
pyrus_communis	pycom15g27800
rosa_chinensis	RchiOBHm_Chr2g0111411 RchiOBHm_Chr2g0111431
rosa_laevigata	RLG00000017894
rosa_multiflora	Rmu_ssc0000075.1_g000016
rosa_roxburghii	Rroxscaffold_2G00132400
rosa_rugosa	Rorug02G0173400 Rorug02G0173500 Rorug02G0173600 Rorug02G0173800 Rorug02G0173900 Rorug02G0173900 Rorug02G0173900 Rorug02G0173900
rosa_samantha	Rh2AG226700 Rh2BG238500 Rh2CG229800 Rh2CG230000 Rh2CG230200 Rh2CG230400 Rh2DG234100 Rh2DG234200 Rh2DG234300
rosa_wichuraiana	Rw2G017500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	123
AccB1I	GGYRCC	1 cut(s)	160
AciI	CCGC	2 cut(s)	350, 391
AclWI	GGATC	1 cut(s)	327
AcsI	RAATTY	1 cut(s)	93
AcuI	CTGAAG	1 cut(s)	156
AfaI	GTAC	3 cut(s)	23, 47, 286
AfiI	CCNNNNNNNGG	3 cut(s)	254, 356, 411
AflIII	ACRYGT	2 cut(s)	127, 333
AgsI	TTSAA	1 cut(s)	508
AhdI	GACNNNNNGTC	1 cut(s)	334
AjiI	CACGTC	1 cut(s)	334
AluBI	AGCT	4 cut(s)	150, 223, 307, 425
AluI	AGCT	4 cut(s)	150, 223, 307, 425
Alw21I	GWGCWC	3 cut(s)	36, 79, 152
Alw26I	GTCTC	1 cut(s)	294
AlwI	GGATC	1 cut(s)	327
AoxI	GGCC	3 cut(s)	3, 347, 469
ApeKI	GCWGC	1 cut(s)	244
ApoI	RAATTY	1 cut(s)	93
AspLEI	GCGC	1 cut(s)	124
AspS9I	GGNCC	1 cut(s)	414
AvaII	GGWCC	1 cut(s)	414
BanI	GGYRCC	1 cut(s)	160
BanII	GRGCYC	2 cut(s)	89, 152
BbsI	GAAGAC	1 cut(s)	162
Bbv12I	GWGCWC	3 cut(s)	36, 79, 152
BbvI	GCAGC	1 cut(s)	231
BccI	CCATC	1 cut(s)	434
BcoDI	GTCTC	1 cut(s)	294
BfaI	CTAG	1 cut(s)	90
BisI	GCNGC	2 cut(s)	245, 350
BlsI	GCNGC	2 cut(s)	246, 351
BmcAI	AGTACT	1 cut(s)	47
Bme18I	GGWCC	1 cut(s)	414
BmeRI	GACNNNNNGTC	1 cut(s)	334
BmgBI	CACGTC	1 cut(s)	334
BmgT120I	GGNCC	1 cut(s)	414
BmiI	GGNNCC	2 cut(s)	162, 415
BmsI	GCATC	2 cut(s)	109, 264
BpiI	GAAGAC	1 cut(s)	162
BplI	GAGNNNNNCTC	4 cut(s)	134, 166, 212, 244
BpuEI	CTTGAG	1 cut(s)	136
Bsc4I	CCNNNNNNNGG	3 cut(s)	254, 356, 411
Bse1I	ACTGG	1 cut(s)	164
BseLI	CCNNNNNNNGG	3 cut(s)	254, 356, 411
BseMII	CTCAG	3 cut(s)	42, 201, 417
BseNI	ACTGG	1 cut(s)	164
BseRI	GAGGAG	1 cut(s)	160
BseXI	GCAGC	1 cut(s)	231
BshFI	GGCC	3 cut(s)	5, 349, 471
BshNI	GGYRCC	1 cut(s)	160
BsiHKAI	GWGCWC	3 cut(s)	36, 79, 152
BslI	CCNNNNNNNGG	3 cut(s)	254, 356, 411
BsmAI	GTCTC	1 cut(s)	294
BsmBI	CGTCTC	1 cut(s)	294
BsnI	GGCC	3 cut(s)	5, 349, 471
Bsp1286I	GDGCHC	4 cut(s)	36, 79, 89, 152
Bsp1407I	TGTACA	1 cut(s)	21
Bsp143I	GATC	1 cut(s)	319
BspACI	CCGC	2 cut(s)	350, 391
BspANI	GGCC	3 cut(s)	5, 349, 471
BspCNI	CTCAG	3 cut(s)	41, 200, 418
BspLI	GGNNCC	2 cut(s)	162, 415
BspPI	GGATC	1 cut(s)	327
BspQI	GCTCTTC	1 cut(s)	451
BspT107I	GGYRCC	1 cut(s)	160
BsrGI	TGTACA	1 cut(s)	21
BsrI	ACTGG	1 cut(s)	164
BssMI	GATC	1 cut(s)	319
Bst4CI	ACNGT	1 cut(s)	50
Bst6I	CTCTTC	2 cut(s)	389, 451
BstAUI	TGTACA	1 cut(s)	21
BstDEI	CTNAG	5 cut(s)	28, 187, 231, 296, 426
BstHHI	GCGC	1 cut(s)	124
BstKTI	GATC	1 cut(s)	322
BstMAI	GTCTC	1 cut(s)	294
BstMBI	GATC	1 cut(s)	319
BstMWI	GCNNNNNNNGC	2 cut(s)	267, 388
BstNSI	RCATGY	1 cut(s)	131
BstV1I	GCAGC	1 cut(s)	231
BstV2I	GAAGAC	1 cut(s)	162
BsuRI	GGCC	3 cut(s)	5, 349, 471
BtrI	CACGTC	1 cut(s)	334
BtsIMutI	CAGTG	2 cut(s)	171, 195
CfoI	GCGC	1 cut(s)	124
Cfr13I	GGNCC	1 cut(s)	414
Csp6I	GTAC	3 cut(s)	22, 46, 285
CviAII	CATG	4 cut(s)	128, 140, 205, 479
CviQI	GTAC	3 cut(s)	22, 46, 285
DdeI	CTNAG	5 cut(s)	28, 187, 231, 296, 426
DpnI	GATC	1 cut(s)	321
DpnII	GATC	1 cut(s)	319
DriI	GACNNNNNGTC	1 cut(s)	334
Eam1104I	CTCTTC	2 cut(s)	389, 451
Eam1105I	GACNNNNNGTC	1 cut(s)	334
EarI	CTCTTC	2 cut(s)	389, 451
EciI	GGCGGA	1 cut(s)	406
Ecl136II	GAGCTC	1 cut(s)	150
Eco24I	GRGCYC	2 cut(s)	89, 152
Eco47I	GGWCC	1 cut(s)	414
Eco53kI	GAGCTC	1 cut(s)	150
Eco57I	CTGAAG	1 cut(s)	156
EcoICRI	GAGCTC	1 cut(s)	150
EcoT38I	GRGCYC	2 cut(s)	89, 152
Esp3I	CGTCTC	1 cut(s)	294
FaeI	CATG	4 cut(s)	131, 143, 208, 482
FaiI	YATR	7 cut(s)	129, 141, 206, 345, 452, 480, 550
FatI	CATG	4 cut(s)	127, 139, 204, 478
Fnu4HI	GCNGC	2 cut(s)	245, 350
FriOI	GRGCYC	2 cut(s)	89, 152
Fsp4HI	GCNGC	2 cut(s)	245, 350
FspBI	CTAG	1 cut(s)	90
FspI	TGCGCA	1 cut(s)	123
GlaI	GCGC	1 cut(s)	123
GluI	GCNGC	2 cut(s)	245, 350
HaeIII	GGCC	3 cut(s)	5, 349, 471
HhaI	GCGC	1 cut(s)	124
Hin1II	CATG	4 cut(s)	131, 143, 208, 482
Hin6I	GCGC	1 cut(s)	122
HinP1I	GCGC	1 cut(s)	122
Hpy166II	GTNNAC	1 cut(s)	11
Hpy188I	TCNGA	2 cut(s)	31, 175
Hpy188III	TCNNGA	1 cut(s)	323
Hpy8I	GTNNAC	1 cut(s)	11
Hpy99I	CGWCG	2 cut(s)	335, 370
HpyAV	CCTTC	5 cut(s)	349, 370, 449, 456, 506
HpyCH4III	ACNGT	1 cut(s)	50
HpyCH4IV	ACGT	1 cut(s)	333
HpyCH4V	TGCA	2 cut(s)	277, 478
HpyF10VI	GCNNNNNNNGC	2 cut(s)	267, 388
HpyF3I	CTNAG	5 cut(s)	28, 187, 231, 296, 426
HpySE526I	ACGT	1 cut(s)	333
Hsp92II	CATG	4 cut(s)	131, 143, 208, 482
HspAI	GCGC	1 cut(s)	122
Kzo9I	GATC	1 cut(s)	319
LguI	GCTCTTC	1 cut(s)	451
LmnI	GCTCC	2 cut(s)	82, 147
LpnPI	CCDG	6 cut(s)	19, 177, 284, 371, 453, 482
Lsp1109I	GCAGC	1 cut(s)	231
LweI	GCATC	2 cut(s)	109, 264
MaeI	CTAG	1 cut(s)	90
MaeII	ACGT	1 cut(s)	333
MaeIII	GTNAC	1 cut(s)	190
MalI	GATC	1 cut(s)	321
MboI	GATC	1 cut(s)	319
MboII	GAAGA	6 cut(s)	162, 406, 438, 471, 480, 483
MhlI	GDGCHC	4 cut(s)	36, 79, 89, 152
MluCI	AATT	1 cut(s)	93
MmeI	TCCRAC	1 cut(s)	506
MseI	TTAA	1 cut(s)	135
MwoI	GCNNNNNNNGC	2 cut(s)	267, 388
NdeII	GATC	1 cut(s)	319
NlaIII	CATG	4 cut(s)	131, 143, 208, 482
NlaIV	GGNNCC	2 cut(s)	162, 415
NmuCI	GTSAC	1 cut(s)	190
NsbI	TGCGCA	1 cut(s)	123
NspI	RCATGY	1 cut(s)	131
PciI	ACATGT	1 cut(s)	127
PciSI	GCTCTTC	1 cut(s)	451
PkrI	GCNGC	2 cut(s)	246, 351
PscI	ACATGT	1 cut(s)	127
Psp124BI	GAGCTC	1 cut(s)	152
PspN4I	GGNNCC	2 cut(s)	162, 415
PspPI	GGNCC	1 cut(s)	414
RsaI	GTAC	3 cut(s)	23, 47, 286
RsaNI	GTAC	3 cut(s)	22, 46, 285
SacI	GAGCTC	1 cut(s)	152
SapI	GCTCTTC	1 cut(s)	451
SaqAI	TTAA	1 cut(s)	135
SatI	GCNGC	2 cut(s)	245, 350
Sau3AI	GATC	1 cut(s)	319
Sau96I	GGNCC	1 cut(s)	414
ScaI	AGTACT	1 cut(s)	47
SduI	GDGCHC	4 cut(s)	36, 79, 89, 152
SfaNI	GCATC	2 cut(s)	109, 264
SinI	GGWCC	1 cut(s)	414
SmlI	CTYRAG	1 cut(s)	151
SmoI	CTYRAG	1 cut(s)	151
Sse9I	AATT	1 cut(s)	93
SsiI	CCGC	2 cut(s)	350, 391
SspMI	CTAG	1 cut(s)	90
SstI	GAGCTC	1 cut(s)	152
TaaI	ACNGT	1 cut(s)	50
TaiI	ACGT	1 cut(s)	336
TaqI	TCGA	1 cut(s)	365
TasI	AATT	1 cut(s)	93
TatI	WGTACW	2 cut(s)	21, 45
TauI	GCSGC	1 cut(s)	352
Tru1I	TTAA	1 cut(s)	135
Tru9I	TTAA	1 cut(s)	135
TscAI	CASTG	2 cut(s)	171, 195
TseFI	GTSAC	1 cut(s)	190
TseI	GCWGC	1 cut(s)	244
Tsp45I	GTSAC	1 cut(s)	190
TspDTI	ATGAA	3 cut(s)	87, 332, 525
TspRI	CASTG	2 cut(s)	171, 195
VpaK11BI	GGWCC	1 cut(s)	414
XapI	RAATTY	1 cut(s)	93
XceI	RCATGY	1 cut(s)	131
XspI	CTAG	1 cut(s)	90
ZrmI	AGTACT	1 cut(s)	47

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.