Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0003589

Physical Location & Seq

Genomic Coordinates Reverse (-)

15789555 .. 15790696

Gene Structure 1142 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0173500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

ATGGCCATAATGTGTTGTATTCAGGTGCAGCCTCACCAGGAGATGACAGTGGACGAGTTCAAAGCGTGGCTGCACCGGTTCGACAATGATCACAATGGACAGATCAGCCGGGAGGAGCTAAAAGAAGCTCTTCACAGCTTGAGGATTTGGTTCGGGTGGTGGAGAAGTCGTCAAGTAATGAAGCAAGCAGACTCCAATAGAGATGGCCAAATAGACAACGCCAAGGAATTCGAAAAGCTGGTGAACTATGCTCAGCAAAATTTGCACATGAAGATTTATGAGAGTAATGGGTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

98

Amino Acids

11.84

Weight (kDa)

6.18

Isoelectric Point (pI)

36.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_1	PF00036	19 - 46	8.9e-06	EF hand domain
EF-hand_6	PF13405	19 - 47	4.8e-06	EF-hand domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003589)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38090 AT4G38090 AT4G38090
fragaria_vesca	FvH4_1g19800 FvH4_1g19810 FvH4_1g19820 FvH4_1g19820 FvH4_1g19820 FvH4_1g19820
malus_domestica	MD15G1314800.v1.1
prunus_persica	Prupe.6G197200_v2.0.a1
pyrus_communis	pycom15g27800
rosa_chinensis	RchiOBHm_Chr2g0111411 RchiOBHm_Chr2g0111431
rosa_laevigata	RLG00000017894
rosa_multiflora	Rmu_ssc0000075.1_g000016
rosa_roxburghii	Rroxscaffold_2G00132400
rosa_rugosa	Rorug02G0173400 Rorug02G0173500 Rorug02G0173600 Rorug02G0173800 Rorug02G0173900 Rorug02G0173900 Rorug02G0173900 Rorug02G0173900
rosa_samantha	Rh2AG226700 Rh2BG238500 Rh2CG229800 Rh2CG230000 Rh2CG230200 Rh2CG230400 Rh2DG234100 Rh2DG234200 Rh2DG234300
rosa_wichuraiana	Rw2G017500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	2 cut(s)	3, 205
AcsI	RAATTY	2 cut(s)	227, 259
AgeI	ACCGGT	1 cut(s)	75
AgsI	TTSAA	1 cut(s)	61
AjnI	CCWGG	1 cut(s)	36
AluBI	AGCT	4 cut(s)	118, 128, 138, 238
AluI	AGCT	4 cut(s)	118, 128, 138, 238
AoxI	GGCC	2 cut(s)	3, 205
ApeKI	GCWGC	2 cut(s)	28, 70
ApoI	RAATTY	2 cut(s)	227, 259
AsiGI	ACCGGT	1 cut(s)	75
Asp700I	GAANNNNTTC	1 cut(s)	129
AsuC2I	CCSGG	1 cut(s)	110
AsuHPI	GGTGA	2 cut(s)	26, 253
AsuII	TTCGAA	1 cut(s)	231
BalI	TGGCCA	2 cut(s)	5, 207
BbvI	GCAGC	2 cut(s)	40, 57
BccI	CCATC	1 cut(s)	197
BciT130I	CCWGG	1 cut(s)	38
BclI	TGATCA	1 cut(s)	88
BcnI	CCSGG	1 cut(s)	110
BisI	GCNGC	2 cut(s)	29, 71
BlpI	GCTNAGC	1 cut(s)	252
BlsI	GCNGC	2 cut(s)	30, 72
Bme1390I	CCNGG	2 cut(s)	38, 110
BmrFI	CCNGG	2 cut(s)	38, 110
Bpu1102I	GCTNAGC	1 cut(s)	252
Bpu14I	TTCGAA	1 cut(s)	231
BpuEI	CTTGAG	1 cut(s)	160
BpuMI	CCSGG	1 cut(s)	110
BsaJI	CCNNGG	1 cut(s)	222
BsaWI	WCCGGW	1 cut(s)	75
BsaXI	ACNNNNNCTCC	2 cut(s)	154, 184
Bse118I	RCCGGY	1 cut(s)	75
BseBI	CCWGG	1 cut(s)	38
BseDI	CCNNGG	1 cut(s)	222
BseMII	CTCAG	1 cut(s)	266
BseRI	GAGGAG	1 cut(s)	128
BseXI	GCAGC	2 cut(s)	40, 57
BsgI	GTGCAG	2 cut(s)	47, 56
BshFI	GGCC	2 cut(s)	5, 207
BshTI	ACCGGT	1 cut(s)	75
BsiSI	CCGG	2 cut(s)	76, 109
BsnI	GGCC	2 cut(s)	5, 207
Bsp119I	TTCGAA	1 cut(s)	231
Bsp143I	GATC	2 cut(s)	88, 102
Bsp1720I	GCTNAGC	1 cut(s)	252
BspANI	GGCC	2 cut(s)	5, 207
BspCNI	CTCAG	1 cut(s)	265
BspQI	GCTCTTC	1 cut(s)	135
BspT104I	TTCGAA	1 cut(s)	231
BsrFI	RCCGGY	1 cut(s)	75
BssAI	RCCGGY	1 cut(s)	75
BssECI	CCNNGG	1 cut(s)	222
BssMI	GATC	2 cut(s)	88, 102
BssT1I	CCWWGG	1 cut(s)	222
Bst2UI	CCWGG	1 cut(s)	38
Bst4CI	ACNGT	1 cut(s)	49
Bst6I	CTCTTC	1 cut(s)	135
BstAPI	GCANNNNNTGC	1 cut(s)	262
BstBI	TTCGAA	1 cut(s)	231
BstC8I	GCNNGC	1 cut(s)	186
BstDEI	CTNAG	1 cut(s)	252
BstKTI	GATC	2 cut(s)	91, 105
BstMBI	GATC	2 cut(s)	88, 102
BstMWI	GCNNNNNNNGC	1 cut(s)	262
BstNI	CCWGG	1 cut(s)	38
BstSCI	CCNGG	2 cut(s)	36, 108
BstV1I	GCAGC	2 cut(s)	40, 57
BsuRI	GGCC	2 cut(s)	5, 207
BtsIMutI	CAGTG	1 cut(s)	54
Cac8I	GCNNGC	1 cut(s)	186
Cfr10I	RCCGGY	1 cut(s)	75
CspAI	ACCGGT	1 cut(s)	75
CviAII	CATG	1 cut(s)	268
CviJI	RGCY	9 cut(s)	5, 31, 70, 108, 118, 128, 138, 207, 238
CviKI_1	RGCY	9 cut(s)	5, 31, 70, 108, 118, 128, 138, 207, 238
DdeI	CTNAG	1 cut(s)	252
DpnI	GATC	2 cut(s)	90, 104
DpnII	GATC	2 cut(s)	88, 102
EaeI	YGGCCR	2 cut(s)	3, 205
Eam1104I	CTCTTC	1 cut(s)	135
EarI	CTCTTC	1 cut(s)	135
Eco130I	CCWWGG	1 cut(s)	222
EcoRI	GAATTC	1 cut(s)	227
EcoRII	CCWGG	1 cut(s)	36
EcoT14I	CCWWGG	1 cut(s)	222
ErhI	CCWWGG	1 cut(s)	222
FaeI	CATG	1 cut(s)	271
FaiI	YATR	4 cut(s)	8, 249, 269, 279
FalI	AAGNNNNNCTT	2 cut(s)	114, 146
FatI	CATG	1 cut(s)	267
FbaI	TGATCA	1 cut(s)	88
Fnu4HI	GCNGC	2 cut(s)	29, 71
Fsp4HI	GCNGC	2 cut(s)	29, 71
GluI	GCNGC	2 cut(s)	29, 71
HaeIII	GGCC	2 cut(s)	5, 207
HapII	CCGG	2 cut(s)	76, 109
Hin1II	CATG	1 cut(s)	271
HinfI	GANTC	1 cut(s)	191
HpaII	CCGG	2 cut(s)	76, 109
HphI	GGTGA	2 cut(s)	26, 253
Hpy166II	GTNNAC	2 cut(s)	52, 244
Hpy8I	GTNNAC	2 cut(s)	52, 244
HpyCH4III	ACNGT	1 cut(s)	49
HpyCH4V	TGCA	3 cut(s)	28, 73, 265
HpyF10VI	GCNNNNNNNGC	1 cut(s)	262
HpyF3I	CTNAG	1 cut(s)	252
Hsp92II	CATG	1 cut(s)	271
Ksp22I	TGATCA	1 cut(s)	88
Kzo9I	GATC	2 cut(s)	88, 102
LguI	GCTCTTC	1 cut(s)	135
LmnI	GCTCC	1 cut(s)	115
LpnPI	CCDG	6 cut(s)	8, 23, 50, 89, 122, 224
Lsp1109I	GCAGC	2 cut(s)	40, 57
MalI	GATC	2 cut(s)	90, 104
MboI	GATC	2 cut(s)	88, 102
MboII	GAAGA	2 cut(s)	122, 283
MlsI	TGGCCA	2 cut(s)	5, 207
MluCI	AATT	2 cut(s)	227, 259
MluNI	TGGCCA	2 cut(s)	5, 207
MlyI	GAGTC	1 cut(s)	185
MnlI	CCTC	3 cut(s)	42, 106, 135
Mox20I	TGGCCA	2 cut(s)	5, 207
MroXI	GAANNNNTTC	1 cut(s)	129
MscI	TGGCCA	2 cut(s)	5, 207
Msp20I	TGGCCA	2 cut(s)	5, 207
MspI	CCGG	2 cut(s)	76, 109
MspR9I	CCNGG	2 cut(s)	38, 110
MvaI	CCWGG	1 cut(s)	38
MwoI	GCNNNNNNNGC	1 cut(s)	262
NciI	CCSGG	1 cut(s)	110
NdeII	GATC	2 cut(s)	88, 102
NlaIII	CATG	1 cut(s)	271
NspV	TTCGAA	1 cut(s)	231
PciSI	GCTCTTC	1 cut(s)	135
PdmI	GAANNNNTTC	1 cut(s)	129
PinAI	ACCGGT	1 cut(s)	75
PkrI	GCNGC	2 cut(s)	30, 72
PleI	GAGTC	1 cut(s)	185
PpsI	GAGTC	1 cut(s)	185
Psp6I	CCWGG	1 cut(s)	36
PspGI	CCWGG	1 cut(s)	36
SapI	GCTCTTC	1 cut(s)	135
SatI	GCNGC	2 cut(s)	29, 71
Sau3AI	GATC	2 cut(s)	88, 102
SchI	GAGTC	1 cut(s)	185
ScrFI	CCNGG	2 cut(s)	38, 110
SetI	ASST	5 cut(s)	27, 120, 130, 140, 240
SfuI	TTCGAA	1 cut(s)	231
SmlI	CTYRAG	1 cut(s)	139
SmoI	CTYRAG	1 cut(s)	139
Sse9I	AATT	2 cut(s)	227, 259
StyD4I	CCNGG	2 cut(s)	36, 108
StyI	CCWWGG	1 cut(s)	222
TaaI	ACNGT	1 cut(s)	49
TaqI	TCGA	2 cut(s)	81, 231
TasI	AATT	2 cut(s)	227, 259
TscAI	CASTG	1 cut(s)	54
TseI	GCWGC	2 cut(s)	28, 70
TspDTI	ATGAA	2 cut(s)	194, 284
TspRI	CASTG	1 cut(s)	54
XapI	RAATTY	2 cut(s)	227, 259
XmnI	GAANNNNTTC	1 cut(s)	129

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.