Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0003589

Physical Location & Seq

Genomic Coordinates Reverse (-)

23281774 .. 23289091

Gene Structure 7318 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG230000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 243 bp

ATGAAGACATATGAGATCACGATCAAGGAGCCCGAAGCTTACCGCAAAGGTTTAGGCATTTCCACACTCAAATCTGAAATCCAAGAGCTACAATCTTTTCAAGTTGAAGACATCAAACAAGATTATGAGACCGGTAAAGATGGTATCACCATGGTTACCTTTCAAGTTGATTTTTACCGTGTTGAGAAATTAGAGAATGCTATCAAAAACAACTGTAGCCGGGAGTTGGTGTTCTATGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UPF0029

Protein Analysis

80

Amino Acids

9.42

Weight (kDa)

4.87

Isoelectric Point (pI)

29.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003589)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38090 AT4G38090 AT4G38090
fragaria_vesca	FvH4_1g19800 FvH4_1g19810 FvH4_1g19820 FvH4_1g19820 FvH4_1g19820 FvH4_1g19820
malus_domestica	MD15G1314800.v1.1
prunus_persica	Prupe.6G197200_v2.0.a1
pyrus_communis	pycom15g27800
rosa_chinensis	RchiOBHm_Chr2g0111411 RchiOBHm_Chr2g0111431
rosa_laevigata	RLG00000017894
rosa_multiflora	Rmu_ssc0000075.1_g000016
rosa_roxburghii	Rroxscaffold_2G00132400
rosa_rugosa	Rorug02G0173400 Rorug02G0173500 Rorug02G0173600 Rorug02G0173800 Rorug02G0173900 Rorug02G0173900 Rorug02G0173900 Rorug02G0173900
rosa_samantha	Rh2AG226700 Rh2BG238500 Rh2CG229800 Rh2CG230000 Rh2CG230200 Rh2CG230400 Rh2DG234100 Rh2DG234200 Rh2DG234300
rosa_wichuraiana	Rw2G017500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	43
AfiI	CCNNNNNNNGG	1 cut(s)	226
AgeI	ACCGGT	1 cut(s)	131
AgsI	TTSAA	3 cut(s)	101, 107, 164
AloI	GAACNNNNNNTCC	1 cut(s)	215
AluBI	AGCT	2 cut(s)	38, 88
AluI	AGCT	2 cut(s)	38, 88
Alw26I	GTCTC	1 cut(s)	122
AsiGI	ACCGGT	1 cut(s)	131
AsuC2I	CCSGG	1 cut(s)	221
AsuHPI	GGTGA	1 cut(s)	139
BanII	GRGCYC	1 cut(s)	33
BbsI	GAAGAC	2 cut(s)	11, 114
BccI	CCATC	1 cut(s)	134
BcnI	CCSGG	1 cut(s)	221
BcoDI	GTCTC	1 cut(s)	122
BfmI	CTRYAG	1 cut(s)	214
Bme1390I	CCNGG	1 cut(s)	221
BmiI	GGNNCC	1 cut(s)	30
BmrFI	CCNGG	1 cut(s)	221
BpiI	GAAGAC	2 cut(s)	11, 114
BpuMI	CCSGG	1 cut(s)	221
BsaBI	GATNNNNATC	1 cut(s)	20
BsaI	GGTCTC	1 cut(s)	122
BsaJI	CCNNGG	1 cut(s)	150
BsaWI	WCCGGW	1 cut(s)	131
BsaXI	ACNNNNNCTCC	1 cut(s)	215
Bsc4I	CCNNNNNNNGG	1 cut(s)	226
Bse118I	RCCGGY	1 cut(s)	131
Bse8I	GATNNNNATC	1 cut(s)	20
BseDI	CCNNGG	1 cut(s)	150
BseJI	GATNNNNATC	1 cut(s)	20
BseLI	CCNNNNNNNGG	1 cut(s)	226
BshTI	ACCGGT	1 cut(s)	131
BsiSI	CCGG	2 cut(s)	132, 220
BslI	CCNNNNNNNGG	1 cut(s)	226
BsmAI	GTCTC	1 cut(s)	122
BsmI	GAATGC	1 cut(s)	202
Bso31I	GGTCTC	1 cut(s)	122
Bsp1286I	GDGCHC	1 cut(s)	33
Bsp143I	GATC	2 cut(s)	15, 21
Bsp19I	CCATGG	1 cut(s)	150
BspACI	CCGC	1 cut(s)	43
BspLI	GGNNCC	1 cut(s)	30
BspTNI	GGTCTC	1 cut(s)	122
BsrFI	RCCGGY	1 cut(s)	131
BssAI	RCCGGY	1 cut(s)	131
BssECI	CCNNGG	1 cut(s)	150
BssMI	GATC	2 cut(s)	15, 21
BssT1I	CCWWGG	1 cut(s)	150
Bst4CI	ACNGT	2 cut(s)	179, 215
BstDSI	CCRYGG	1 cut(s)	150
BstEII	GGTNACC	1 cut(s)	154
BstKTI	GATC	2 cut(s)	18, 24
BstMAI	GTCTC	1 cut(s)	122
BstMBI	GATC	2 cut(s)	15, 21
BstPI	GGTNACC	1 cut(s)	154
BstSCI	CCNGG	1 cut(s)	219
BstSFI	CTRYAG	1 cut(s)	214
BstV2I	GAAGAC	2 cut(s)	11, 114
BtgI	CCRYGG	1 cut(s)	150
Cfr10I	RCCGGY	1 cut(s)	131
CspAI	ACCGGT	1 cut(s)	131
CviAII	CATG	1 cut(s)	151
CviJI	RGCY	4 cut(s)	31, 38, 88, 219
CviKI_1	RGCY	4 cut(s)	31, 38, 88, 219
DpnI	GATC	2 cut(s)	17, 23
DpnII	GATC	2 cut(s)	15, 21
Eco130I	CCWWGG	1 cut(s)	150
Eco24I	GRGCYC	1 cut(s)	33
Eco31I	GGTCTC	1 cut(s)	122
Eco91I	GGTNACC	1 cut(s)	154
EcoO65I	GGTNACC	1 cut(s)	154
EcoT14I	CCWWGG	1 cut(s)	150
EcoT38I	GRGCYC	1 cut(s)	33
ErhI	CCWWGG	1 cut(s)	150
FaeI	CATG	1 cut(s)	154
FaiI	YATR	5 cut(s)	10, 12, 126, 152, 237
FatI	CATG	1 cut(s)	150
FauNDI	CATATG	1 cut(s)	10
FriOI	GRGCYC	1 cut(s)	33
HapII	CCGG	2 cut(s)	132, 220
Hin1II	CATG	1 cut(s)	154
HindIII	AAGCTT	1 cut(s)	36
HpaII	CCGG	2 cut(s)	132, 220
HphI	GGTGA	1 cut(s)	139
Hpy188I	TCNGA	1 cut(s)	76
Hpy188III	TCNNGA	1 cut(s)	19
HpyCH4III	ACNGT	2 cut(s)	179, 215
Hsp92II	CATG	1 cut(s)	154
Kzo9I	GATC	2 cut(s)	15, 21
LmnI	GCTCC	1 cut(s)	28
LpnPI	CCDG	2 cut(s)	145, 233
MaeIII	GTNAC	1 cut(s)	154
MalI	GATC	2 cut(s)	17, 23
MboI	GATC	2 cut(s)	15, 21
MboII	GAAGA	2 cut(s)	16, 119
MhlI	GDGCHC	1 cut(s)	33
MluCI	AATT	1 cut(s)	188
MspI	CCGG	2 cut(s)	132, 220
MspR9I	CCNGG	1 cut(s)	221
Mva1269I	GAATGC	1 cut(s)	202
NciI	CCSGG	1 cut(s)	221
NcoI	CCATGG	1 cut(s)	150
NdeI	CATATG	1 cut(s)	10
NdeII	GATC	2 cut(s)	15, 21
NlaIII	CATG	1 cut(s)	154
NlaIV	GGNNCC	1 cut(s)	30
PctI	GAATGC	1 cut(s)	202
PinAI	ACCGGT	1 cut(s)	131
PspEI	GGTNACC	1 cut(s)	154
PspN4I	GGNNCC	1 cut(s)	30
Sau3AI	GATC	2 cut(s)	15, 21
ScrFI	CCNGG	1 cut(s)	221
SduI	GDGCHC	1 cut(s)	33
SetI	ASST	4 cut(s)	40, 52, 90, 161
SfcI	CTRYAG	1 cut(s)	214
Sse9I	AATT	1 cut(s)	188
SsiI	CCGC	1 cut(s)	43
StyD4I	CCNGG	1 cut(s)	219
StyI	CCWWGG	1 cut(s)	150
TaaI	ACNGT	2 cut(s)	179, 215
TasI	AATT	1 cut(s)	188
TspDTI	ATGAA	1 cut(s)	17

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.