Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0003589

Physical Location & Seq

Genomic Coordinates Forward (+)

20453107 .. 20454992

Gene Structure 1886 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G197200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGCCAGCAGTAGCATTAACAAAATATAATCTCATTTACCACCAGAGGGCAGCGCCGATTAAGCACAATCGCAGCATTCGCATTTGTGCCTCAATTTTAGGCATAGGCTGCATAGCCGCCGGAGCCAACAAGGCCATGGTGACCACCGCCGCAAGCAGCAGCAGCAATGGTGGCGCGTATACGACGATCAAAGAGAGAGTGAGATTCGAAAAGGAGATCAAGAAGAGCAAGTTCATCGCCATCGCTGGTCCCATCCCCGATGAACAATCCGCTCAATCCTTCCTCTCCCAGGTCCGAGATCAACGTGCTACTCACAATTGCTGGGCGTACAAGGTTGGAGATCAATACCGGTCTAATGATGATGGTGAACCGTCGGGAACAGCCGGAAAACCCATTCATTCTGCTATTGAATCTTCAGGAATTGATAGAGTTATGGTGGTCGTCATCAGGCACTTTGGAGGTATTAAATTGGGTACTGGAGGACTTGTCAGGGCTTATGGAGGAGTTGCCTCAGAATGCTTGAGAAATGCCCCAACTTGTCTTGTAAAATCCAAGGTGAGAATGGGTGTGGAGGTTCCATTTGATCTTTTGGGCGTTCTATACCATCAGCTACAGTCTTTTCAAGTTGAAGACATCAAGCAAGATTATGAGACTGGTAAAGATGGCATCACCGTGGTTACTTTCCAAGTTGATTTTGACCGTATTGAGAAATTGGAGGATGCTATCAAAAGCCATTGTAGCCGTGACTTAGTGTTCTATAAGCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UPF0029

Protein Analysis

256

Amino Acids

27.94

Weight (kDa)

9.16

Isoelectric Point (pI)

42.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003589)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38090 AT4G38090 AT4G38090
fragaria_vesca	FvH4_1g19800 FvH4_1g19810 FvH4_1g19820 FvH4_1g19820 FvH4_1g19820 FvH4_1g19820
malus_domestica	MD15G1314800.v1.1
prunus_persica	Prupe.6G197200_v2.0.a1
pyrus_communis	pycom15g27800
rosa_chinensis	RchiOBHm_Chr2g0111411 RchiOBHm_Chr2g0111431
rosa_laevigata	RLG00000017894
rosa_multiflora	Rmu_ssc0000075.1_g000016
rosa_roxburghii	Rroxscaffold_2G00132400
rosa_rugosa	Rorug02G0173400 Rorug02G0173500 Rorug02G0173600 Rorug02G0173800 Rorug02G0173900 Rorug02G0173900 Rorug02G0173900 Rorug02G0173900
rosa_samantha	Rh2AG226700 Rh2BG238500 Rh2CG229800 Rh2CG230000 Rh2CG230200 Rh2CG230400 Rh2DG234100 Rh2DG234200 Rh2DG234300
rosa_wichuraiana	Rw2G017500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	272
AccI	GTMKAC	1 cut(s)	179
AccII	CGCG	1 cut(s)	176
AciI	CCGC	4 cut(s)	117, 147, 150, 270
AcuI	CTGAAG	1 cut(s)	399
AfaI	GTAC	2 cut(s)	329, 475
AfeI	AGCGCT	1 cut(s)	764
AfiI	CCNNNNNNNGG	2 cut(s)	46, 289
AgeI	ACCGGT	1 cut(s)	348
AgsI	TTSAA	3 cut(s)	410, 623, 629
AjnI	CCWGG	1 cut(s)	288
AluBI	AGCT	1 cut(s)	610
AluI	AGCT	1 cut(s)	610
Alw26I	GTCTC	1 cut(s)	644
Aor51HI	AGCGCT	1 cut(s)	764
AoxI	GGCC	1 cut(s)	132
ApeKI	GCWGC	6 cut(s)	50, 72, 108, 156, 159, 162
AsiGI	ACCGGT	1 cut(s)	348
AspLEI	GCGC	3 cut(s)	55, 176, 765
AspS9I	GGNCC	2 cut(s)	248, 292
AsuHPI	GGTGA	4 cut(s)	151, 377, 568, 661
AsuII	TTCGAA	1 cut(s)	207
AvaII	GGWCC	2 cut(s)	248, 292
BbsI	GAAGAC	1 cut(s)	636
BbvI	GCAGC	6 cut(s)	62, 84, 95, 168, 171, 174
BccI	CCATC	5 cut(s)	248, 260, 356, 612, 656
BceAI	ACGGC	1 cut(s)	726
BcgI	CGANNNNNNTGC	2 cut(s)	217, 251
BciT130I	CCWGG	1 cut(s)	290
BcoDI	GTCTC	1 cut(s)	644
BfmI	CTRYAG	1 cut(s)	611
BfoI	RGCGCY	2 cut(s)	56, 766
BglI	GCCNNNNNGGC	1 cut(s)	131
BisI	GCNGC	8 cut(s)	51, 73, 109, 117, 150, 157, 160, 163
BlsI	GCNGC	8 cut(s)	52, 74, 110, 118, 151, 158, 161, 164
Bme1390I	CCNGG	1 cut(s)	290
Bme18I	GGWCC	2 cut(s)	248, 292
BmgT120I	GGNCC	2 cut(s)	248, 292
BmiI	GGNNCC	3 cut(s)	124, 250, 576
BmrFI	CCNGG	1 cut(s)	290
BmsI	GCATC	2 cut(s)	675, 709
BpiI	GAAGAC	1 cut(s)	636
BpmI	CTGGAG	1 cut(s)	498
Bpu14I	TTCGAA	1 cut(s)	207
BpuEI	CTTGAG	1 cut(s)	541
BsaJI	CCNNGG	4 cut(s)	135, 288, 552, 672
BsaWI	WCCGGW	1 cut(s)	348
BsaXI	ACNNNNNCTCC	2 cut(s)	471, 501
Bsc4I	CCNNNNNNNGG	2 cut(s)	46, 289
Bse118I	RCCGGY	1 cut(s)	348
Bse1I	ACTGG	2 cut(s)	481, 658
Bse3DI	GCAATG	1 cut(s)	172
BseBI	CCWGG	1 cut(s)	290
BseDI	CCNNGG	4 cut(s)	135, 288, 552, 672
BseGI	GGATG	2 cut(s)	252, 724
BseLI	CCNNNNNNNGG	2 cut(s)	46, 289
BseMI	GCAATG	1 cut(s)	172
BseMII	CTCAG	1 cut(s)	525
BseNI	ACTGG	2 cut(s)	481, 658
BseRI	GAGGAG	1 cut(s)	516
BseXI	GCAGC	6 cut(s)	62, 84, 95, 168, 171, 174
BseYI	CCCAGC	1 cut(s)	321
Bsh1236I	CGCG	1 cut(s)	176
BshFI	GGCC	1 cut(s)	134
BshTI	ACCGGT	1 cut(s)	348
BsiSI	CCGG	3 cut(s)	120, 349, 384
BslFI	GGGAC	1 cut(s)	234
BslI	CCNNNNNNNGG	2 cut(s)	46, 289
BsmAI	GTCTC	1 cut(s)	644
BsmFI	GGGAC	1 cut(s)	234
BsmI	GAATGC	2 cut(s)	75, 521
BsnI	GGCC	1 cut(s)	134
Bsp119I	TTCGAA	1 cut(s)	207
Bsp143I	GATC	5 cut(s)	186, 216, 298, 340, 583
Bsp19I	CCATGG	1 cut(s)	135
BspACI	CCGC	4 cut(s)	117, 147, 150, 270
BspANI	GGCC	1 cut(s)	134
BspCNI	CTCAG	1 cut(s)	524
BspFNI	CGCG	1 cut(s)	176
BspLI	GGNNCC	3 cut(s)	124, 250, 576
BspQI	GCTCTTC	1 cut(s)	218
BspT104I	TTCGAA	1 cut(s)	207
BsrBI	CCGCTC	1 cut(s)	272
BsrDI	GCAATG	1 cut(s)	172
BsrFI	RCCGGY	1 cut(s)	348
BsrI	ACTGG	2 cut(s)	481, 658
BssAI	RCCGGY	1 cut(s)	348
BssECI	CCNNGG	4 cut(s)	135, 288, 552, 672
BssMI	GATC	5 cut(s)	186, 216, 298, 340, 583
BssNAI	GTATAC	1 cut(s)	180
BssT1I	CCWWGG	2 cut(s)	135, 552
Bst1107I	GTATAC	1 cut(s)	180
Bst2UI	CCWGG	1 cut(s)	290
Bst4CI	ACNGT	4 cut(s)	372, 615, 673, 701
Bst6I	CTCTTC	1 cut(s)	218
BstAPI	GCANNNNNTGC	1 cut(s)	108
BstBI	TTCGAA	1 cut(s)	207
BstC8I	GCNNGC	2 cut(s)	6, 154
BstDEI	CTNAG	2 cut(s)	511, 748
BstDSI	CCRYGG	2 cut(s)	135, 672
BstEII	GGTNACC	1 cut(s)	139
BstENI	CCTNNNNNAGG	1 cut(s)	287
BstF5I	GGATG	2 cut(s)	252, 724
BstFNI	CGCG	1 cut(s)	176
BstH2I	RGCGCY	2 cut(s)	56, 766
BstHHI	GCGC	3 cut(s)	55, 176, 765
BstKTI	GATC	5 cut(s)	189, 219, 301, 343, 586
BstMAI	GTCTC	1 cut(s)	644
BstMBI	GATC	5 cut(s)	186, 216, 298, 340, 583
BstMWI	GCNNNNNNNGC	8 cut(s)	61, 78, 108, 122, 131, 162, 171, 738
BstNI	CCWGG	1 cut(s)	290
BstPI	GGTNACC	1 cut(s)	139
BstSCI	CCNGG	1 cut(s)	288
BstSFI	CTRYAG	1 cut(s)	611
BstUI	CGCG	1 cut(s)	176
BstV1I	GCAGC	6 cut(s)	62, 84, 95, 168, 171, 174
BstV2I	GAAGAC	1 cut(s)	636
BstZ17I	GTATAC	1 cut(s)	180
BsuRI	GGCC	1 cut(s)	134
BtgI	CCRYGG	2 cut(s)	135, 672
BtgZI	GCGATG	2 cut(s)	220, 226
BtsCI	GGATG	2 cut(s)	252, 724
Cac8I	GCNNGC	2 cut(s)	6, 154
CfoI	GCGC	3 cut(s)	55, 176, 765
Cfr10I	RCCGGY	1 cut(s)	348
Cfr13I	GGNCC	2 cut(s)	248, 292
Csp6I	GTAC	2 cut(s)	328, 474
CspAI	ACCGGT	1 cut(s)	348
CviAII	CATG	1 cut(s)	136
CviJI	RGCY	9 cut(s)	108, 116, 125, 134, 383, 494, 610, 732, 741
CviKI_1	RGCY	9 cut(s)	108, 116, 125, 134, 383, 494, 610, 732, 741
CviQI	GTAC	2 cut(s)	328, 474
DdeI	CTNAG	2 cut(s)	511, 748
DpnI	GATC	5 cut(s)	188, 218, 300, 342, 585
DpnII	GATC	5 cut(s)	186, 216, 298, 340, 583
Eam1104I	CTCTTC	1 cut(s)	218
EarI	CTCTTC	1 cut(s)	218
Eco130I	CCWWGG	2 cut(s)	135, 552
Eco47I	GGWCC	2 cut(s)	248, 292
Eco47III	AGCGCT	1 cut(s)	764
Eco57I	CTGAAG	1 cut(s)	399
Eco91I	GGTNACC	1 cut(s)	139
EcoNI	CCTNNNNNAGG	1 cut(s)	287
EcoO65I	GGTNACC	1 cut(s)	139
EcoRII	CCWGG	1 cut(s)	288
EcoT14I	CCWWGG	2 cut(s)	135, 552
ErhI	CCWWGG	2 cut(s)	135, 552
FaeI	CATG	1 cut(s)	139
FaqI	GGGAC	1 cut(s)	234
FatI	CATG	1 cut(s)	135
FblI	GTMKAC	1 cut(s)	179
Fnu4HI	GCNGC	8 cut(s)	51, 73, 109, 117, 150, 157, 160, 163
FokI	GGATG	2 cut(s)	239, 731
Fsp4HI	GCNGC	8 cut(s)	51, 73, 109, 117, 150, 157, 160, 163
GlaI	GCGC	3 cut(s)	54, 175, 764
GluI	GCNGC	8 cut(s)	51, 73, 109, 117, 150, 157, 160, 163
GsaI	CCCAGC	1 cut(s)	325
GsuI	CTGGAG	1 cut(s)	498
HaeII	RGCGCY	2 cut(s)	56, 766
HaeIII	GGCC	1 cut(s)	134
HapII	CCGG	3 cut(s)	120, 349, 384
HhaI	GCGC	3 cut(s)	55, 176, 765
Hin1II	CATG	1 cut(s)	139
Hin6I	GCGC	3 cut(s)	53, 174, 763
HinP1I	GCGC	3 cut(s)	53, 174, 763
HinfI	GANTC	2 cut(s)	204, 410
HpaII	CCGG	3 cut(s)	120, 349, 384
HphI	GGTGA	4 cut(s)	151, 377, 568, 661
Hpy166II	GTNNAC	2 cut(s)	180, 368
Hpy188I	TCNGA	2 cut(s)	296, 514
Hpy188III	TCNNGA	3 cut(s)	220, 375, 417
Hpy8I	GTNNAC	2 cut(s)	180, 368
Hpy99I	CGWCG	2 cut(s)	187, 376
HpyAV	CCTTC	1 cut(s)	289
HpyCH4III	ACNGT	4 cut(s)	372, 615, 673, 701
HpyCH4IV	ACGT	1 cut(s)	304
HpyCH4V	TGCA	1 cut(s)	111
HpyF10VI	GCNNNNNNNGC	8 cut(s)	61, 78, 108, 122, 131, 162, 171, 738
HpyF3I	CTNAG	2 cut(s)	511, 748
HpySE526I	ACGT	1 cut(s)	304
Hsp92II	CATG	1 cut(s)	139
HspAI	GCGC	3 cut(s)	53, 174, 763
Kzo9I	GATC	5 cut(s)	186, 216, 298, 340, 583
LguI	GCTCTTC	1 cut(s)	218
LmnI	GCTCC	1 cut(s)	122
Lsp1109I	GCAGC	6 cut(s)	62, 84, 95, 168, 171, 174
LweI	GCATC	2 cut(s)	675, 709
MaeII	ACGT	1 cut(s)	304
MaeIII	GTNAC	3 cut(s)	139, 676, 743
MalI	GATC	5 cut(s)	188, 218, 300, 342, 585
MbiI	CCGCTC	1 cut(s)	272
MboI	GATC	5 cut(s)	186, 216, 298, 340, 583
MboII	GAAGA	3 cut(s)	235, 405, 641
MfeI	CAATTG	1 cut(s)	316
MluCI	AATT	5 cut(s)	93, 316, 420, 467, 710
MmeI	TCCRAC	1 cut(s)	316
MnlI	CCTC	9 cut(s)	39, 100, 293, 452, 473, 494, 520, 565, 709
MseI	TTAA	3 cut(s)	17, 60, 465
MslI	CAYNNNNRTG	1 cut(s)	671
MspI	CCGG	3 cut(s)	120, 349, 384
MspR9I	CCNGG	1 cut(s)	290
MunI	CAATTG	1 cut(s)	316
Mva1269I	GAATGC	2 cut(s)	75, 521
MvaI	CCWGG	1 cut(s)	290
MvnI	CGCG	1 cut(s)	176
MwoI	GCNNNNNNNGC	8 cut(s)	61, 78, 108, 122, 131, 162, 171, 738
NcoI	CCATGG	1 cut(s)	135
NdeII	GATC	5 cut(s)	186, 216, 298, 340, 583
NlaIII	CATG	1 cut(s)	139
NlaIV	GGNNCC	3 cut(s)	124, 250, 576
NmuCI	GTSAC	2 cut(s)	139, 743
NspV	TTCGAA	1 cut(s)	207
PciSI	GCTCTTC	1 cut(s)	218
PctI	GAATGC	2 cut(s)	75, 521
PfeI	GAWTC	2 cut(s)	204, 410
PinAI	ACCGGT	1 cut(s)	348
PkrI	GCNGC	8 cut(s)	52, 74, 110, 118, 151, 158, 161, 164
Psp6I	CCWGG	1 cut(s)	288
PspEI	GGTNACC	1 cut(s)	139
PspFI	CCCAGC	1 cut(s)	321
PspGI	CCWGG	1 cut(s)	288
PspN4I	GGNNCC	3 cut(s)	124, 250, 576
PspPI	GGNCC	2 cut(s)	248, 292
RsaI	GTAC	2 cut(s)	329, 475
RsaNI	GTAC	2 cut(s)	328, 474
RseI	CAYNNNNRTG	1 cut(s)	671
SapI	GCTCTTC	1 cut(s)	218
SaqAI	TTAA	3 cut(s)	17, 60, 465
SatI	GCNGC	8 cut(s)	51, 73, 109, 117, 150, 157, 160, 163
Sau3AI	GATC	5 cut(s)	186, 216, 298, 340, 583
Sau96I	GGNCC	2 cut(s)	248, 292
ScrFI	CCNGG	1 cut(s)	290
SetI	ASST	7 cut(s)	294, 307, 336, 463, 558, 576, 612
SfaNI	GCATC	2 cut(s)	675, 709
SfcI	CTRYAG	1 cut(s)	611
SfuI	TTCGAA	1 cut(s)	207
SinI	GGWCC	2 cut(s)	248, 292
SmiMI	CAYNNNNRTG	1 cut(s)	671
SmlI	CTYRAG	1 cut(s)	520
SmoI	CTYRAG	1 cut(s)	520
Sse9I	AATT	5 cut(s)	93, 316, 420, 467, 710
SsiI	CCGC	4 cut(s)	117, 147, 150, 270
StyD4I	CCNGG	1 cut(s)	288
StyI	CCWWGG	2 cut(s)	135, 552
TaaI	ACNGT	4 cut(s)	372, 615, 673, 701
TaiI	ACGT	1 cut(s)	307
TaqI	TCGA	1 cut(s)	207
TasI	AATT	5 cut(s)	93, 316, 420, 467, 710
TauI	GCSGC	2 cut(s)	119, 152
TfiI	GAWTC	2 cut(s)	204, 410
Tru1I	TTAA	3 cut(s)	17, 60, 465
Tru9I	TTAA	3 cut(s)	17, 60, 465
TseFI	GTSAC	2 cut(s)	139, 743
TseI	GCWGC	6 cut(s)	50, 72, 108, 156, 159, 162
Tsp45I	GTSAC	2 cut(s)	139, 743
TspDTI	ATGAA	3 cut(s)	223, 276, 386
VpaK11BI	GGWCC	2 cut(s)	248, 292
XagI	CCTNNNNNAGG	1 cut(s)	287
XcmI	CCANNNNNNNNNTGG	2 cut(s)	133, 559
XmiI	GTMKAC	1 cut(s)	179

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.