Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0003589

Physical Location & Seq

Genomic Coordinates Reverse (-)

23277749 .. 23279006

Gene Structure 1258 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG229800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGACCATCGGATTACATGCTTATAAAACGAAGGCTAATATATCTCCGTCAAGTATTCAGTTTGATGGGGGTGGAGAGAGGAACGGAATAGATGGAATTGCTGATGGAATAGTGGGGATTGTTGTTGGGAGTGTGGGCACTGAGTTGGCTGGCAATGGAGGTAGAGTAGTTGGCAAGGGTGTTGTAGGCACTGCTGATTTCGGCAACGATGGGATTGATGGCAATGGCGGCAATGTGGCCTTTGGCAGAGTCAGGGCAGTTGGAAATGAAGGCAAAGGGTTTGAGGGCAGAGGTGGCAATGTGGCCTTGGGCAGTGTTGGTAGTGAGCTGGATTGCAATGGAGGTAGTGTCGTGGGCAAGGGGGTTGTCGGCACAGTAGGGAATGCTGATTTTGGCAAAGATGGGATTACAGGTGGGGTGGTAGGCGGTGTAGGCAACGGGGTGGATGGCAATGGTGGCAAGGTGGCTTTTGGAAGAGTTGGGGTAGTTGGAAGTGTAGGCAAGGGGTTTGAGGGCAATGGTGGCAATGTGGCTTTGGGCAGTGTTGGTACCGAGGGCAACGGGGGCAGGGTGGCCTTGGGCAGTGTCGGTGCCGAGGGTAATGGAGGCAATGCAGTCTTGGGTAGAGAGGGAATTGTGGGCACTACTGGCAATGCTGGTGGAGGAGCCGCTGCTGTGTCCAAGAGGTGGCGAGCTGCTTGGCTCTTATGGGTACTTGACAGTAGCAACATCATGGCCAGAGACAGAACGAAGAAAAGCTTAGAAGAAGTCATGTTTGAGTTTAAAGGAGCTGCCAAGGCAAATCTCATCAGAAAAGAAATGTTGTTTATTGTGATGATGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

281

Amino Acids

27.5

Weight (kDa)

9.04

Isoelectric Point (pI)

3.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003589)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38090 AT4G38090 AT4G38090
fragaria_vesca	FvH4_1g19800 FvH4_1g19810 FvH4_1g19820 FvH4_1g19820 FvH4_1g19820 FvH4_1g19820
malus_domestica	MD15G1314800.v1.1
prunus_persica	Prupe.6G197200_v2.0.a1
pyrus_communis	pycom15g27800
rosa_chinensis	RchiOBHm_Chr2g0111411 RchiOBHm_Chr2g0111431
rosa_laevigata	RLG00000017894
rosa_multiflora	Rmu_ssc0000075.1_g000016
rosa_roxburghii	Rroxscaffold_2G00132400
rosa_rugosa	Rorug02G0173400 Rorug02G0173500 Rorug02G0173600 Rorug02G0173800 Rorug02G0173900 Rorug02G0173900 Rorug02G0173900 Rorug02G0173900
rosa_samantha	Rh2AG226700 Rh2BG238500 Rh2CG229800 Rh2CG230000 Rh2CG230200 Rh2CG230400 Rh2DG234100 Rh2DG234200 Rh2DG234300
rosa_wichuraiana	Rw2G017500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	24
Acc65I	GGTACC	1 cut(s)	548
AccB1I	GGYRCC	2 cut(s)	548, 590
AccB7I	CCANNNNNTGG	1 cut(s)	687
AciI	CCGC	3 cut(s)	228, 426, 669
AcoI	YGGCCR	1 cut(s)	735
AfaI	GTAC	2 cut(s)	550, 714
AfiI	CCNNNNNNNGG	1 cut(s)	687
AluBI	AGCT	4 cut(s)	328, 695, 759, 791
AluI	AGCT	4 cut(s)	328, 695, 759, 791
Alw26I	GTCTC	1 cut(s)	735
AoxI	GGCC	4 cut(s)	237, 303, 573, 735
ApeKI	GCWGC	3 cut(s)	671, 695, 791
Asp718I	GGTACC	1 cut(s)	548
BaeGI	GKGCMC	2 cut(s)	140, 644
BalI	TGGCCA	1 cut(s)	737
BanI	GGYRCC	2 cut(s)	548, 590
BbvI	GCAGC	3 cut(s)	658, 682, 778
BccI	CCATC	8 cut(s)	14, 59, 86, 98, 203, 212, 395, 440
BcoDI	GTCTC	1 cut(s)	735
BisI	GCNGC	5 cut(s)	229, 669, 672, 696, 792
BlsI	GCNGC	5 cut(s)	230, 670, 673, 697, 793
BmiI	GGNNCC	3 cut(s)	550, 592, 667
BsaJI	CCNNGG	5 cut(s)	306, 552, 576, 594, 795
BsaXI	ACNNNNNCTCC	4 cut(s)	150, 180, 333, 363
Bsc4I	CCNNNNNNNGG	1 cut(s)	687
Bse1I	ACTGG	1 cut(s)	652
BseDI	CCNNGG	5 cut(s)	306, 552, 576, 594, 795
BseGI	GGATG	1 cut(s)	451
BseLI	CCNNNNNNNGG	1 cut(s)	687
BseMII	CTCAG	1 cut(s)	132
BseNI	ACTGG	1 cut(s)	652
BseRI	GAGGAG	1 cut(s)	678
BseSI	GKGCMC	2 cut(s)	140, 644
BseXI	GCAGC	3 cut(s)	658, 682, 778
BshFI	GGCC	4 cut(s)	239, 305, 575, 737
BshNI	GGYRCC	2 cut(s)	548, 590
BslI	CCNNNNNNNGG	1 cut(s)	687
BsmAI	GTCTC	1 cut(s)	735
BsmI	GAATGC	1 cut(s)	388
BsnI	GGCC	4 cut(s)	239, 305, 575, 737
Bsp1286I	GDGCHC	2 cut(s)	140, 644
BspACI	CCGC	3 cut(s)	228, 426, 669
BspANI	GGCC	4 cut(s)	239, 305, 575, 737
BspCNI	CTCAG	1 cut(s)	133
BspLI	GGNNCC	3 cut(s)	550, 592, 667
BspT107I	GGYRCC	2 cut(s)	548, 590
BsrI	ACTGG	1 cut(s)	652
BssECI	CCNNGG	5 cut(s)	306, 552, 576, 594, 795
BssT1I	CCWWGG	3 cut(s)	306, 576, 795
Bst4CI	ACNGT	2 cut(s)	376, 722
Bst6I	CTCTTC	1 cut(s)	469
BstC8I	GCNNGC	2 cut(s)	151, 693
BstDEI	CTNAG	2 cut(s)	141, 760
BstF5I	GGATG	1 cut(s)	451
BstMAI	GTCTC	1 cut(s)	735
BstMWI	GCNNNNNNNGC	8 cut(s)	228, 294, 432, 456, 522, 564, 648, 797
BstNSI	RCATGY	1 cut(s)	20
BstSLI	GKGCMC	2 cut(s)	140, 644
BstV1I	GCAGC	3 cut(s)	658, 682, 778
BsuRI	GGCC	4 cut(s)	239, 305, 575, 737
BtsCI	GGATG	1 cut(s)	451
BtsI	GCAGTG	4 cut(s)	189, 319, 547, 589
BtsIMutI	CAGTG	5 cut(s)	138, 189, 319, 547, 589
Cac8I	GCNNGC	2 cut(s)	151, 693
Csp6I	GTAC	2 cut(s)	549, 713
CspCI	CAANNNNNGTGG	2 cut(s)	640, 675
CviAII	CATG	3 cut(s)	17, 733, 772
CviQI	GTAC	2 cut(s)	549, 713
DdeI	CTNAG	2 cut(s)	141, 760
DraI	TTTAAA	1 cut(s)	784
EaeI	YGGCCR	1 cut(s)	735
Eam1104I	CTCTTC	1 cut(s)	469
EarI	CTCTTC	1 cut(s)	469
Eco130I	CCWWGG	3 cut(s)	306, 576, 795
EcoT14I	CCWWGG	3 cut(s)	306, 576, 795
ErhI	CCWWGG	3 cut(s)	306, 576, 795
FaeI	CATG	3 cut(s)	20, 736, 775
FaiI	YATR	6 cut(s)	18, 24, 41, 709, 734, 773
FalI	AAGNNNNNCTT	2 cut(s)	743, 775
FatI	CATG	3 cut(s)	16, 732, 771
Fnu4HI	GCNGC	5 cut(s)	229, 669, 672, 696, 792
FokI	GGATG	1 cut(s)	458
Fsp4HI	GCNGC	5 cut(s)	229, 669, 672, 696, 792
GluI	GCNGC	5 cut(s)	229, 669, 672, 696, 792
HaeIII	GGCC	4 cut(s)	239, 305, 575, 737
Hin1II	CATG	3 cut(s)	20, 736, 775
HindIII	AAGCTT	1 cut(s)	757
HinfI	GANTC	1 cut(s)	249
Hpy188I	TCNGA	2 cut(s)	11, 812
HpyAV	CCTTC	2 cut(s)	25, 263
HpyCH4III	ACNGT	2 cut(s)	376, 722
HpyCH4V	TGCA	2 cut(s)	336, 614
HpyF10VI	GCNNNNNNNGC	8 cut(s)	228, 294, 432, 456, 522, 564, 648, 797
HpyF3I	CTNAG	2 cut(s)	141, 760
Hsp92II	CATG	3 cut(s)	20, 736, 775
KpnI	GGTACC	1 cut(s)	552
LmnI	GCTCC	2 cut(s)	665, 788
LpnPI	CCDG	8 cut(s)	135, 238, 314, 396, 553, 633, 642, 751
Lsp1109I	GCAGC	3 cut(s)	658, 682, 778
MboII	GAAGA	3 cut(s)	486, 763, 776
MhlI	GDGCHC	2 cut(s)	140, 644
MlsI	TGGCCA	1 cut(s)	737
MluCI	AATT	2 cut(s)	96, 633
MluNI	TGGCCA	1 cut(s)	737
MlyI	GAGTC	1 cut(s)	258
MmeI	TCCRAC	2 cut(s)	241, 469
Mox20I	TGGCCA	1 cut(s)	737
MscI	TGGCCA	1 cut(s)	737
MseI	TTAA	1 cut(s)	783
Msp20I	TGGCCA	1 cut(s)	737
MspA1I	CMGCKG	1 cut(s)	671
Mva1269I	GAATGC	1 cut(s)	388
MwoI	GCNNNNNNNGC	8 cut(s)	228, 294, 432, 456, 522, 564, 648, 797
NlaIII	CATG	3 cut(s)	20, 736, 775
NlaIV	GGNNCC	3 cut(s)	550, 592, 667
NmeAIII	GCCGAG	1 cut(s)	619
NspI	RCATGY	1 cut(s)	20
PctI	GAATGC	1 cut(s)	388
PflMI	CCANNNNNTGG	1 cut(s)	687
PkrI	GCNGC	5 cut(s)	230, 670, 673, 697, 793
PleI	GAGTC	1 cut(s)	257
PpsI	GAGTC	1 cut(s)	257
PsiI	TTATAA	1 cut(s)	24
PspN4I	GGNNCC	3 cut(s)	550, 592, 667
RsaI	GTAC	2 cut(s)	550, 714
RsaNI	GTAC	2 cut(s)	549, 713
SaqAI	TTAA	1 cut(s)	783
SatI	GCNGC	5 cut(s)	229, 669, 672, 696, 792
SchI	GAGTC	1 cut(s)	258
SduI	GDGCHC	2 cut(s)	140, 644
Sse9I	AATT	2 cut(s)	96, 633
SsiI	CCGC	3 cut(s)	228, 426, 669
StyI	CCWWGG	3 cut(s)	306, 576, 795
TaaI	ACNGT	2 cut(s)	376, 722
TasI	AATT	2 cut(s)	96, 633
TauI	GCSGC	2 cut(s)	231, 671
Tru1I	TTAA	1 cut(s)	783
Tru9I	TTAA	1 cut(s)	783
TscAI	CASTG	5 cut(s)	145, 196, 319, 547, 589
TseI	GCWGC	3 cut(s)	671, 695, 791
TspDTI	ATGAA	1 cut(s)	282
TspGWI	ACGGA	2 cut(s)	36, 99
TspRI	CASTG	5 cut(s)	145, 196, 319, 547, 589
Van91I	CCANNNNNTGG	1 cut(s)	687
XceI	RCATGY	1 cut(s)	20

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.