Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000075.1

Orthogroup ID

OG0003589

Physical Location & Seq

Genomic Coordinates Reverse (-)

76508 .. 78164

Gene Structure 1657 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000075.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

atgaatttggctaatccaaaacaagcctcaaggcttaagcacgttgatacgataaaatcaaatcaaatgccggcagcagcagcatcaatcacaccaataccaaatttccatttccattcccacaaggtagctcccattaggtttcgtctctgggcctcgattctcagcattgccgccgtagccaaccgagccaccatggtcaccactgccgccaccagcaacagctgtcgcggtggcgcggatcctcgtgctactcacaattgctgggcatacaaggtgggagatcagtaccggtctaatgatgacggtgagccatctggaacggccgggaagcccattcattctgctattgagtcttcaggagttgatagagtaatggtggtggtcatccgttattttggaggaattaaattggggactggaggactagtcagggcatatggaggagtaacatcggaatgcttgagaaatgccccaactcatctcgtaaaatcgaaggtaagaatgggtgtagaggttccatttgatcttatcggcattctataccatcagctacaatcttttcaagttgaagacatcaaacaagattatgagaccggtaaagatggtatcaccatggttacctttcaagttgattttgactgtgttgataaattagaggatgctatcaaaaataactgtagccgggagttagtgttctataagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UPF0029

Protein Analysis

235

Amino Acids

25.71

Weight (kDa)

8.94

Isoelectric Point (pI)

29.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003589)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38090 AT4G38090 AT4G38090
fragaria_vesca	FvH4_1g19800 FvH4_1g19810 FvH4_1g19820 FvH4_1g19820 FvH4_1g19820 FvH4_1g19820
malus_domestica	MD15G1314800.v1.1
prunus_persica	Prupe.6G197200_v2.0.a1
pyrus_communis	pycom15g27800
rosa_chinensis	RchiOBHm_Chr2g0111411 RchiOBHm_Chr2g0111431
rosa_laevigata	RLG00000017894
rosa_multiflora	Rmu_ssc0000075.1_g000016
rosa_roxburghii	Rroxscaffold_2G00132400
rosa_rugosa	Rorug02G0173400 Rorug02G0173500 Rorug02G0173600 Rorug02G0173800 Rorug02G0173900 Rorug02G0173900 Rorug02G0173900 Rorug02G0173900
rosa_samantha	Rh2AG226700 Rh2BG238500 Rh2CG229800 Rh2CG230000 Rh2CG230200 Rh2CG230400 Rh2DG234100 Rh2DG234200 Rh2DG234300
rosa_wichuraiana	Rw2G017500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	231, 239
AciI	CCGC	4 cut(s)	174, 210, 231, 239
AclWI	GGATC	2 cut(s)	236, 249
AcoI	YGGCCR	1 cut(s)	324
AcsI	RAATTY	2 cut(s)	4, 103
AcuI	CTGAAG	1 cut(s)	342
AfaI	GTAC	1 cut(s)	290
AflII	CTTAAG	1 cut(s)	35
AgeI	ACCGGT	2 cut(s)	291, 596
AgsI	TTSAA	3 cut(s)	566, 572, 629
AhlI	ACTAGT	1 cut(s)	427
AloI	GAACNNNNNNTCC	1 cut(s)	680
AluBI	AGCT	3 cut(s)	131, 225, 553
AluI	AGCT	3 cut(s)	131, 225, 553
Alw26I	GTCTC	2 cut(s)	152, 587
AlwI	GGATC	2 cut(s)	236, 249
AoxI	GGCC	2 cut(s)	153, 324
ApeKI	GCWGC	3 cut(s)	74, 77, 80
ApoI	RAATTY	2 cut(s)	4, 103
AsiGI	ACCGGT	2 cut(s)	291, 596
AspLEI	GCGC	1 cut(s)	239
AspS9I	GGNCC	1 cut(s)	153
AsuC2I	CCSGG	2 cut(s)	328, 686
AsuHPI	GGTGA	3 cut(s)	193, 320, 604
BamHI	GGATCC	1 cut(s)	241
BauI	CACGAG	1 cut(s)	246
BbsI	GAAGAC	2 cut(s)	348, 579
BbvI	GCAGC	3 cut(s)	86, 89, 92
BccI	CCATC	3 cut(s)	322, 555, 599
BceAI	ACGGC	2 cut(s)	161, 339
BcnI	CCSGG	2 cut(s)	328, 686
BcoDI	GTCTC	2 cut(s)	152, 587
BcuI	ACTAGT	1 cut(s)	427
BfaI	CTAG	1 cut(s)	428
BfmI	CTRYAG	1 cut(s)	679
BfrI	CTTAAG	1 cut(s)	35
BisI	GCNGC	5 cut(s)	75, 78, 81, 174, 210
BlsI	GCNGC	5 cut(s)	76, 79, 82, 175, 211
Bme1390I	CCNGG	2 cut(s)	328, 686
BmgT120I	GGNCC	1 cut(s)	153
BmiI	GGNNCC	2 cut(s)	243, 519
BmrFI	CCNGG	2 cut(s)	328, 686
BmsI	GCATC	2 cut(s)	92, 652
BpiI	GAAGAC	2 cut(s)	348, 579
BpmI	CTGGAG	1 cut(s)	441
BpuEI	CTTGAG	2 cut(s)	13, 484
BpuMI	CCSGG	2 cut(s)	328, 686
BsaI	GGTCTC	1 cut(s)	587
BsaJI	CCNNGG	2 cut(s)	195, 615
BsaWI	WCCGGW	2 cut(s)	291, 596
BsaXI	ACNNNNNCTCC	3 cut(s)	414, 444, 680
Bse118I	RCCGGY	3 cut(s)	70, 291, 596
Bse1I	ACTGG	1 cut(s)	424
Bse3DI	GCAATG	1 cut(s)	168
BseDI	CCNNGG	2 cut(s)	195, 615
BseGI	GGATG	2 cut(s)	387, 667
BseMI	GCAATG	1 cut(s)	168
BseMII	CTCAG	1 cut(s)	178
BseNI	ACTGG	1 cut(s)	424
BseRI	GAGGAG	1 cut(s)	459
BseX3I	CGGCCG	1 cut(s)	324
BseXI	GCAGC	3 cut(s)	86, 89, 92
BseYI	CCCAGC	1 cut(s)	264
Bsh1236I	CGCG	2 cut(s)	231, 239
Bsh1285I	CGRYCG	1 cut(s)	327
BshFI	GGCC	2 cut(s)	155, 326
BshTI	ACCGGT	2 cut(s)	291, 596
BsiEI	CGRYCG	1 cut(s)	327
BsiSI	CCGG	5 cut(s)	71, 292, 327, 597, 685
BslFI	GGGAC	1 cut(s)	430
BsmAI	GTCTC	2 cut(s)	152, 587
BsmBI	CGTCTC	1 cut(s)	152
BsmFI	GGGAC	1 cut(s)	430
BsmI	GAATGC	2 cut(s)	464, 537
BsnI	GGCC	2 cut(s)	155, 326
Bso31I	GGTCTC	1 cut(s)	587
Bsp143I	GATC	3 cut(s)	241, 283, 526
Bsp19I	CCATGG	2 cut(s)	195, 615
BspACI	CCGC	4 cut(s)	174, 210, 231, 239
BspANI	GGCC	2 cut(s)	155, 326
BspCNI	CTCAG	1 cut(s)	177
BspFNI	CGCG	2 cut(s)	231, 239
BspLI	GGNNCC	2 cut(s)	243, 519
BspPI	GGATC	2 cut(s)	236, 249
BspTI	CTTAAG	1 cut(s)	35
BspTNI	GGTCTC	1 cut(s)	587
BsrDI	GCAATG	1 cut(s)	168
BsrFI	RCCGGY	3 cut(s)	70, 291, 596
BsrI	ACTGG	1 cut(s)	424
BssAI	RCCGGY	3 cut(s)	70, 291, 596
BssECI	CCNNGG	2 cut(s)	195, 615
BssMI	GATC	3 cut(s)	241, 283, 526
BssSI	CACGAG	1 cut(s)	246
BssT1I	CCWWGG	2 cut(s)	195, 615
Bst2BI	CACGAG	1 cut(s)	246
Bst4CI	ACNGT	3 cut(s)	308, 644, 680
BstAFI	CTTAAG	1 cut(s)	35
BstC8I	GCNNGC	1 cut(s)	72
BstDEI	CTNAG	1 cut(s)	164
BstDSI	CCRYGG	2 cut(s)	195, 615
BstEII	GGTNACC	2 cut(s)	199, 619
BstF5I	GGATG	2 cut(s)	387, 667
BstFNI	CGCG	2 cut(s)	231, 239
BstHHI	GCGC	1 cut(s)	239
BstKTI	GATC	3 cut(s)	244, 286, 529
BstMAI	GTCTC	2 cut(s)	152, 587
BstMBI	GATC	3 cut(s)	241, 283, 526
BstMCI	CGRYCG	1 cut(s)	327
BstMWI	GCNNNNNNNGC	3 cut(s)	80, 179, 188
BstPI	GGTNACC	2 cut(s)	199, 619
BstSCI	CCNGG	2 cut(s)	326, 684
BstSFI	CTRYAG	1 cut(s)	679
BstUI	CGCG	2 cut(s)	231, 239
BstV1I	GCAGC	3 cut(s)	86, 89, 92
BstV2I	GAAGAC	2 cut(s)	348, 579
BstX2I	RGATCY	1 cut(s)	241
BstYI	RGATCY	1 cut(s)	241
BstZI	CGGCCG	1 cut(s)	324
BsuRI	GGCC	2 cut(s)	155, 326
BtgI	CCRYGG	2 cut(s)	195, 615
BtsCI	GGATG	2 cut(s)	387, 667
BtsI	GCAGTG	1 cut(s)	204
BtsIMutI	CAGTG	1 cut(s)	204
Cac8I	GCNNGC	1 cut(s)	72
CfoI	GCGC	1 cut(s)	239
Cfr10I	RCCGGY	3 cut(s)	70, 291, 596
Cfr13I	GGNCC	1 cut(s)	153
Csp6I	GTAC	1 cut(s)	289
CspAI	ACCGGT	2 cut(s)	291, 596
CviAII	CATG	2 cut(s)	196, 616
CviQI	GTAC	1 cut(s)	289
DdeI	CTNAG	1 cut(s)	164
DpnI	GATC	3 cut(s)	243, 285, 528
DpnII	GATC	3 cut(s)	241, 283, 526
EaeI	YGGCCR	1 cut(s)	324
EagI	CGGCCG	1 cut(s)	324
EclXI	CGGCCG	1 cut(s)	324
Eco130I	CCWWGG	2 cut(s)	195, 615
Eco31I	GGTCTC	1 cut(s)	587
Eco52I	CGGCCG	1 cut(s)	324
Eco57I	CTGAAG	1 cut(s)	342
Eco91I	GGTNACC	2 cut(s)	199, 619
EcoO65I	GGTNACC	2 cut(s)	199, 619
EcoT14I	CCWWGG	2 cut(s)	195, 615
ErhI	CCWWGG	2 cut(s)	195, 615
Esp3I	CGTCTC	1 cut(s)	152
FaeI	CATG	2 cut(s)	199, 619
FaiI	YATR	8 cut(s)	197, 271, 439, 441, 544, 591, 617, 702
FaqI	GGGAC	1 cut(s)	430
FatI	CATG	2 cut(s)	195, 615
FauNDI	CATATG	1 cut(s)	439
Fnu4HI	GCNGC	5 cut(s)	75, 78, 81, 174, 210
FokI	GGATG	2 cut(s)	374, 674
Fsp4HI	GCNGC	5 cut(s)	75, 78, 81, 174, 210
FspBI	CTAG	1 cut(s)	428
GlaI	GCGC	1 cut(s)	238
GluI	GCNGC	5 cut(s)	75, 78, 81, 174, 210
GsaI	CCCAGC	1 cut(s)	268
GsuI	CTGGAG	1 cut(s)	441
HaeIII	GGCC	2 cut(s)	155, 326
HapII	CCGG	5 cut(s)	71, 292, 327, 597, 685
HhaI	GCGC	1 cut(s)	239
Hin1II	CATG	2 cut(s)	199, 619
Hin6I	GCGC	1 cut(s)	237
HinP1I	GCGC	1 cut(s)	237
HinfI	GANTC	2 cut(s)	160, 353
HpaII	CCGG	5 cut(s)	71, 292, 327, 597, 685
HphI	GGTGA	3 cut(s)	193, 320, 604
Hpy188I	TCNGA	1 cut(s)	457
Hpy188III	TCNNGA	2 cut(s)	318, 360
HpyAV	CCTTC	1 cut(s)	490
HpyCH4III	ACNGT	3 cut(s)	308, 644, 680
HpyCH4IV	ACGT	1 cut(s)	42
HpyF10VI	GCNNNNNNNGC	3 cut(s)	80, 179, 188
HpyF3I	CTNAG	1 cut(s)	164
HpySE526I	ACGT	1 cut(s)	42
Hsp92II	CATG	2 cut(s)	199, 619
HspAI	GCGC	1 cut(s)	237
KroI	GCCGGC	1 cut(s)	70
KroNI	GCCGGC	1 cut(s)	72
Kzo9I	GATC	3 cut(s)	241, 283, 526
LmnI	GCTCC	1 cut(s)	136
Lsp1109I	GCAGC	3 cut(s)	86, 89, 92
LweI	GCATC	2 cut(s)	92, 652
MaeI	CTAG	1 cut(s)	428
MaeII	ACGT	1 cut(s)	42
MaeIII	GTNAC	3 cut(s)	199, 448, 619
MalI	GATC	3 cut(s)	243, 285, 528
MboI	GATC	3 cut(s)	241, 283, 526
MboII	GAAGA	2 cut(s)	348, 584
MfeI	CAATTG	1 cut(s)	259
MflI	RGATCY	1 cut(s)	241
MluCI	AATT	6 cut(s)	4, 103, 259, 405, 410, 653
MlyI	GAGTC	1 cut(s)	362
MnlI	CCTC	8 cut(s)	37, 166, 255, 395, 416, 437, 508, 652
MroNI	GCCGGC	1 cut(s)	70
MseI	TTAA	2 cut(s)	36, 408
MslI	CAYNNNNRTG	1 cut(s)	457
MspA1I	CMGCKG	1 cut(s)	225
MspCI	CTTAAG	1 cut(s)	35
MspI	CCGG	5 cut(s)	71, 292, 327, 597, 685
MspR9I	CCNGG	2 cut(s)	328, 686
MunI	CAATTG	1 cut(s)	259
Mva1269I	GAATGC	2 cut(s)	464, 537
MvnI	CGCG	2 cut(s)	231, 239
MwoI	GCNNNNNNNGC	3 cut(s)	80, 179, 188
NaeI	GCCGGC	1 cut(s)	72
NciI	CCSGG	2 cut(s)	328, 686
NcoI	CCATGG	2 cut(s)	195, 615
NdeI	CATATG	1 cut(s)	439
NdeII	GATC	3 cut(s)	241, 283, 526
NgoMIV	GCCGGC	1 cut(s)	70
NlaIII	CATG	2 cut(s)	199, 619
NlaIV	GGNNCC	2 cut(s)	243, 519
NmuCI	GTSAC	1 cut(s)	199
PctI	GAATGC	2 cut(s)	464, 537
PdiI	GCCGGC	1 cut(s)	72
PfeI	GAWTC	1 cut(s)	160
PinAI	ACCGGT	2 cut(s)	291, 596
PkrI	GCNGC	5 cut(s)	76, 79, 82, 175, 211
PleI	GAGTC	1 cut(s)	361
PpsI	GAGTC	1 cut(s)	361
PspEI	GGTNACC	2 cut(s)	199, 619
PspFI	CCCAGC	1 cut(s)	264
PspN4I	GGNNCC	2 cut(s)	243, 519
PspPI	GGNCC	1 cut(s)	153
PsuI	RGATCY	1 cut(s)	241
PvuII	CAGCTG	1 cut(s)	225
RsaI	GTAC	1 cut(s)	290
RsaNI	GTAC	1 cut(s)	289
RseI	CAYNNNNRTG	1 cut(s)	457
SaqAI	TTAA	2 cut(s)	36, 408
SatI	GCNGC	5 cut(s)	75, 78, 81, 174, 210
Sau3AI	GATC	3 cut(s)	241, 283, 526
Sau96I	GGNCC	1 cut(s)	153
SchI	GAGTC	1 cut(s)	362
ScrFI	CCNGG	2 cut(s)	328, 686
SfaNI	GCATC	2 cut(s)	92, 652
SfcI	CTRYAG	1 cut(s)	679
SmiMI	CAYNNNNRTG	1 cut(s)	457
SmlI	CTYRAG	3 cut(s)	28, 35, 463
SmoI	CTYRAG	3 cut(s)	28, 35, 463
SpeI	ACTAGT	1 cut(s)	427
Sse9I	AATT	6 cut(s)	4, 103, 259, 405, 410, 653
SsiI	CCGC	4 cut(s)	174, 210, 231, 239
SspMI	CTAG	1 cut(s)	428
StyD4I	CCNGG	2 cut(s)	326, 684
StyI	CCWWGG	2 cut(s)	195, 615
TaaI	ACNGT	3 cut(s)	308, 644, 680
TaiI	ACGT	1 cut(s)	45
TaqI	TCGA	2 cut(s)	158, 494
TasI	AATT	6 cut(s)	4, 103, 259, 405, 410, 653
TauI	GCSGC	2 cut(s)	176, 212
TfiI	GAWTC	1 cut(s)	160
Tru1I	TTAA	2 cut(s)	36, 408
Tru9I	TTAA	2 cut(s)	36, 408
TscAI	CASTG	1 cut(s)	211
TseFI	GTSAC	1 cut(s)	199
TseI	GCWGC	3 cut(s)	74, 77, 80
Tsp45I	GTSAC	1 cut(s)	199
TspDTI	ATGAA	2 cut(s)	17, 329
TspGWI	ACGGA	1 cut(s)	380
TspRI	CASTG	1 cut(s)	211
Vha464I	CTTAAG	1 cut(s)	35
XapI	RAATTY	2 cut(s)	4, 103
XspI	CTAG	1 cut(s)	428

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.