Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0003589

Physical Location & Seq

Genomic Coordinates Reverse (-)

15832245 .. 15835256

Gene Structure 3012 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0173800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGGCGATTGATGCCATTGAAGCTCCCTCTCCTCCATCTCTATCACCTTCCCATTTCAGTCAACAGCGCCACTTCTATCTCGCCGTCGACAGACTCCAGTTCAAGTTGGAGACATTTATGGACCTGTTGGGCGTGGCGGGAAGGCGCCCCTGTCTTCCAATGATGGTCTGCTGCAGCTCACGTGACGAACTCGACGCCGTCAGCTCCGCCGTCGCAACCGTCCCCTATATCTCTATGGCCCCTCTGTACACTGACCTTGCTGAAGCAGACCGTGCTGCGATATTAGAGTCTTTCAAGCAAGCAACCATCAGGTGGAACCCAGAAGTTGGTGCTCAATCAGCTGATGACAGTGAGCCTGTGAAAGAGGAACAAAAATCTCATATGATAGTTGCTACAGATGCATGCATTCCGCTTCTTGCTTCTGGGGAGTCACCTATTTCTGCTCGTGTTCTTATAAACTATGAGTTACCTGCAAAGAAGGAAATATATATGAGGCGTATGGCAACTTGTTTGGCTGCAGATGGGATTGTAATCAATATGGTTGTGGGGGGTGAGGTAGTAACTCTCAAAAGTATTGAAGAAAGCAGCAACCTAGTCATAGCTGAGATGCCCATAAATATTTCTGAGATTTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UPF0029

Protein Analysis

211

Amino Acids

22.99

Weight (kDa)

4.7

Isoelectric Point (pI)

68.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003589)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38090 AT4G38090 AT4G38090
fragaria_vesca	FvH4_1g19800 FvH4_1g19810 FvH4_1g19820 FvH4_1g19820 FvH4_1g19820 FvH4_1g19820
malus_domestica	MD15G1314800.v1.1
prunus_persica	Prupe.6G197200_v2.0.a1
pyrus_communis	pycom15g27800
rosa_chinensis	RchiOBHm_Chr2g0111411 RchiOBHm_Chr2g0111431
rosa_laevigata	RLG00000017894
rosa_multiflora	Rmu_ssc0000075.1_g000016
rosa_roxburghii	Rroxscaffold_2G00132400
rosa_rugosa	Rorug02G0173400 Rorug02G0173500 Rorug02G0173600 Rorug02G0173800 Rorug02G0173900 Rorug02G0173900 Rorug02G0173900 Rorug02G0173900
rosa_samantha	Rh2AG226700 Rh2BG238500 Rh2CG229800 Rh2CG230000 Rh2CG230200 Rh2CG230400 Rh2DG234100 Rh2DG234200 Rh2DG234300
rosa_wichuraiana	Rw2G017500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	455
Acc36I	ACCTGC	1 cut(s)	478
AccB1I	GGYRCC	1 cut(s)	144
AccB7I	CCANNNNNTGG	2 cut(s)	312, 326
AccI	GTMKAC	1 cut(s)	87
AciI	CCGC	3 cut(s)	137, 207, 410
AcuI	CTGAAG	1 cut(s)	282
AcvI	CACGTG	1 cut(s)	182
AcyI	GRCGYC	2 cut(s)	145, 195
AfaI	GTAC	1 cut(s)	248
AfiI	CCNNNNNNNGG	2 cut(s)	312, 326
AgsI	TTSAA	4 cut(s)	20, 103, 295, 578
AluBI	AGCT	5 cut(s)	23, 177, 204, 341, 602
AluI	AGCT	5 cut(s)	23, 177, 204, 341, 602
Alw21I	GWGCWC	1 cut(s)	334
Alw26I	GTCTC	1 cut(s)	104
AoxI	GGCC	1 cut(s)	237
ApeKI	GCWGC	5 cut(s)	171, 174, 275, 515, 585
AspLEI	GCGC	2 cut(s)	69, 147
AspS9I	GGNCC	2 cut(s)	121, 238
AsuHPI	GGTGA	3 cut(s)	36, 423, 563
AvaII	GGWCC	1 cut(s)	121
BanI	GGYRCC	1 cut(s)	144
BauI	CACGAG	1 cut(s)	444
BbrPI	CACGTG	1 cut(s)	182
BbsI	GAAGAC	1 cut(s)	146
Bbv12I	GWGCWC	1 cut(s)	334
BbvI	GCAGC	5 cut(s)	158, 186, 262, 502, 597
BccI	CCATC	4 cut(s)	43, 157, 314, 515
BceAI	ACGGC	3 cut(s)	68, 182, 194
BcoDI	GTCTC	1 cut(s)	104
BfaI	CTAG	1 cut(s)	593
BfmI	CTRYAG	3 cut(s)	172, 393, 516
BfoI	RGCGCY	2 cut(s)	70, 148
BfuAI	ACCTGC	1 cut(s)	478
BisI	GCNGC	5 cut(s)	172, 175, 276, 516, 586
BlsI	GCNGC	5 cut(s)	173, 176, 277, 517, 587
Bme18I	GGWCC	1 cut(s)	121
BmgT120I	GGNCC	2 cut(s)	121, 238
BmiI	GGNNCC	3 cut(s)	146, 240, 317
BmsI	GCATC	2 cut(s)	388, 597
BpiI	GAAGAC	1 cut(s)	146
BpmI	CTGGAG	1 cut(s)	80
BsaAI	YACGTR	1 cut(s)	182
BsaBI	GATNNNNATC	1 cut(s)	530
BsaHI	GRCGYC	2 cut(s)	145, 195
Bsc4I	CCNNNNNNNGG	2 cut(s)	312, 326
Bse1I	ACTGG	1 cut(s)	97
Bse8I	GATNNNNATC	1 cut(s)	530
BseJI	GATNNNNATC	1 cut(s)	530
BseLI	CCNNNNNNNGG	2 cut(s)	312, 326
BseMII	CTCAG	2 cut(s)	594, 615
BseNI	ACTGG	1 cut(s)	97
BseRI	GAGGAG	1 cut(s)	21
BseXI	GCAGC	5 cut(s)	158, 186, 262, 502, 597
BshFI	GGCC	1 cut(s)	239
BshNI	GGYRCC	1 cut(s)	144
BsiHKAI	GWGCWC	1 cut(s)	334
BslFI	GGGAC	1 cut(s)	206
BslI	CCNNNNNNNGG	2 cut(s)	312, 326
BsmAI	GTCTC	1 cut(s)	104
BsmFI	GGGAC	1 cut(s)	206
BsmI	GAATGC	1 cut(s)	405
BsnI	GGCC	1 cut(s)	239
Bsp1286I	GDGCHC	1 cut(s)	334
Bsp1407I	TGTACA	1 cut(s)	246
BspACI	CCGC	3 cut(s)	137, 207, 410
BspANI	GGCC	1 cut(s)	239
BspCNI	CTCAG	2 cut(s)	595, 616
BspLI	GGNNCC	3 cut(s)	146, 240, 317
BspMAI	CTGCAG	2 cut(s)	176, 520
BspMI	ACCTGC	1 cut(s)	478
BspT107I	GGYRCC	1 cut(s)	144
BsrGI	TGTACA	1 cut(s)	246
BsrI	ACTGG	1 cut(s)	97
BssNI	GRCGYC	2 cut(s)	145, 195
BssSI	CACGAG	1 cut(s)	444
Bst2BI	CACGAG	1 cut(s)	444
Bst4CI	ACNGT	3 cut(s)	220, 272, 350
BstACI	GRCGYC	2 cut(s)	145, 195
BstAPI	GCANNNNNTGC	1 cut(s)	272
BstAUI	TGTACA	1 cut(s)	246
BstBAI	YACGTR	1 cut(s)	182
BstC8I	GCNNGC	2 cut(s)	300, 403
BstDEI	CTNAG	2 cut(s)	603, 624
BstH2I	RGCGCY	2 cut(s)	70, 148
BstHHI	GCGC	2 cut(s)	69, 147
BstMAI	GTCTC	1 cut(s)	104
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 20, 272, 338, 398
BstNSI	RCATGY	1 cut(s)	405
BstSFI	CTRYAG	3 cut(s)	172, 393, 516
BstV1I	GCAGC	5 cut(s)	158, 186, 262, 502, 597
BstV2I	GAAGAC	1 cut(s)	146
BsuRI	GGCC	1 cut(s)	239
BtsIMutI	CAGTG	2 cut(s)	249, 355
BveI	ACCTGC	1 cut(s)	478
Cac8I	GCNNGC	2 cut(s)	300, 403
CfoI	GCGC	2 cut(s)	69, 147
Cfr13I	GGNCC	2 cut(s)	121, 238
CseI	GACGC	1 cut(s)	203
Csp6I	GTAC	1 cut(s)	247
CviAII	CATG	1 cut(s)	402
CviJI	RGCY	8 cut(s)	23, 177, 204, 239, 341, 355, 515, 602
CviKI_1	RGCY	8 cut(s)	23, 177, 204, 239, 341, 355, 515, 602
CviQI	GTAC	1 cut(s)	247
DdeI	CTNAG	2 cut(s)	603, 624
DinI	GGCGCC	1 cut(s)	146
EciI	GGCGGA	1 cut(s)	196
Eco47I	GGWCC	1 cut(s)	121
Eco57I	CTGAAG	1 cut(s)	282
Eco72I	CACGTG	1 cut(s)	182
EcoT22I	ATGCAT	2 cut(s)	403, 407
EgeI	GGCGCC	1 cut(s)	146
EheI	GGCGCC	1 cut(s)	146
FaeI	CATG	1 cut(s)	405
FaqI	GGGAC	1 cut(s)	206
FatI	CATG	1 cut(s)	401
FauI	CCCGC	1 cut(s)	130
FauNDI	CATATG	1 cut(s)	381
FblI	GTMKAC	1 cut(s)	87
Fnu4HI	GCNGC	5 cut(s)	172, 175, 276, 516, 586
Fsp4HI	GCNGC	5 cut(s)	172, 175, 276, 516, 586
FspBI	CTAG	1 cut(s)	593
GlaI	GCGC	2 cut(s)	68, 146
GluI	GCNGC	5 cut(s)	172, 175, 276, 516, 586
GsuI	CTGGAG	1 cut(s)	80
HaeII	RGCGCY	2 cut(s)	70, 148
HaeIII	GGCC	1 cut(s)	239
HgaI	GACGC	1 cut(s)	203
HhaI	GCGC	2 cut(s)	69, 147
Hin1I	GRCGYC	2 cut(s)	145, 195
Hin1II	CATG	1 cut(s)	405
Hin6I	GCGC	2 cut(s)	67, 145
HinP1I	GCGC	2 cut(s)	67, 145
HincII	GTYRAC	2 cut(s)	62, 88
HindII	GTYRAC	2 cut(s)	62, 88
HinfI	GANTC	3 cut(s)	93, 287, 428
HphI	GGTGA	3 cut(s)	36, 423, 563
Hpy166II	GTNNAC	3 cut(s)	62, 88, 249
Hpy188I	TCNGA	1 cut(s)	625
Hpy8I	GTNNAC	3 cut(s)	62, 88, 249
Hpy99I	CGWCG	3 cut(s)	89, 197, 215
HpyAV	CCTTC	3 cut(s)	57, 135, 472
HpyCH4III	ACNGT	3 cut(s)	220, 272, 350
HpyCH4IV	ACGT	1 cut(s)	181
HpyCH4V	TGCA	5 cut(s)	174, 401, 405, 473, 518
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 20, 272, 338, 398
HpyF3I	CTNAG	2 cut(s)	603, 624
HpySE526I	ACGT	1 cut(s)	181
Hsp92I	GRCGYC	2 cut(s)	145, 195
Hsp92II	CATG	1 cut(s)	405
HspAI	GCGC	2 cut(s)	67, 145
KasI	GGCGCC	1 cut(s)	144
LmnI	GCTCC	2 cut(s)	28, 209
LpnPI	CCDG	8 cut(s)	110, 137, 163, 295, 333, 369, 408, 483
Lsp1109I	GCAGC	5 cut(s)	158, 186, 262, 502, 597
LweI	GCATC	2 cut(s)	388, 597
MaeI	CTAG	1 cut(s)	593
MaeII	ACGT	1 cut(s)	181
MaeIII	GTNAC	4 cut(s)	182, 429, 465, 559
MboII	GAAGA	2 cut(s)	146, 590
MhlI	GDGCHC	1 cut(s)	334
Mly113I	GGCGCC	1 cut(s)	145
MlyI	GAGTC	3 cut(s)	87, 296, 437
MmeI	TCCRAC	1 cut(s)	87
MnlI	CCTC	6 cut(s)	37, 42, 252, 358, 486, 547
Mph1103I	ATGCAT	2 cut(s)	403, 407
MspA1I	CMGCKG	1 cut(s)	341
Mva1269I	GAATGC	1 cut(s)	405
MwoI	GCNNNNNNNGC	5 cut(s)	11, 20, 272, 338, 398
NarI	GGCGCC	1 cut(s)	145
NdeI	CATATG	1 cut(s)	381
NlaIII	CATG	1 cut(s)	405
NlaIV	GGNNCC	3 cut(s)	146, 240, 317
NmuCI	GTSAC	2 cut(s)	182, 429
NsiI	ATGCAT	2 cut(s)	403, 407
NspI	RCATGY	1 cut(s)	405
PaeI	GCATGC	1 cut(s)	405
PctI	GAATGC	1 cut(s)	405
PflFI	GACNNNGTC	1 cut(s)	197
PflMI	CCANNNNNTGG	2 cut(s)	312, 326
PkrI	GCNGC	5 cut(s)	173, 176, 277, 517, 587
PleI	GAGTC	3 cut(s)	87, 295, 436
PluTI	GGCGCC	1 cut(s)	148
PmaCI	CACGTG	1 cut(s)	182
PmlI	CACGTG	1 cut(s)	182
PpsI	GAGTC	3 cut(s)	87, 295, 436
Ppu21I	YACGTR	1 cut(s)	182
PsiI	TTATAA	1 cut(s)	455
PspCI	CACGTG	1 cut(s)	182
PspN4I	GGNNCC	3 cut(s)	146, 240, 317
PspPI	GGNCC	2 cut(s)	121, 238
PstI	CTGCAG	2 cut(s)	176, 520
PsyI	GACNNNGTC	1 cut(s)	197
PvuII	CAGCTG	1 cut(s)	341
RsaI	GTAC	1 cut(s)	248
RsaNI	GTAC	1 cut(s)	247
SalI	GTCGAC	1 cut(s)	86
SatI	GCNGC	5 cut(s)	172, 175, 276, 516, 586
Sau96I	GGNCC	2 cut(s)	121, 238
SchI	GAGTC	3 cut(s)	87, 296, 437
SduI	GDGCHC	1 cut(s)	334
SfaNI	GCATC	2 cut(s)	388, 597
SfcI	CTRYAG	3 cut(s)	172, 393, 516
SfoI	GGCGCC	1 cut(s)	146
SinI	GGWCC	1 cut(s)	121
SphI	GCATGC	1 cut(s)	405
SsiI	CCGC	3 cut(s)	137, 207, 410
SspDI	GGCGCC	1 cut(s)	144
SspI	AATATT	1 cut(s)	619
SspMI	CTAG	1 cut(s)	593
TaaI	ACNGT	3 cut(s)	220, 272, 350
TaiI	ACGT	1 cut(s)	184
TaqI	TCGA	2 cut(s)	87, 192
TatI	WGTACW	1 cut(s)	246
TscAI	CASTG	2 cut(s)	256, 355
TseFI	GTSAC	2 cut(s)	182, 429
TseI	GCWGC	5 cut(s)	171, 174, 275, 515, 585
Tsp45I	GTSAC	2 cut(s)	182, 429
TspRI	CASTG	2 cut(s)	256, 355
Tth111I	GACNNNGTC	1 cut(s)	197
Van91I	CCANNNNNTGG	2 cut(s)	312, 326
VpaK11BI	GGWCC	1 cut(s)	121
XceI	RCATGY	1 cut(s)	405
XmiI	GTMKAC	1 cut(s)	87
XspI	CTAG	1 cut(s)	593
Zsp2I	ATGCAT	2 cut(s)	403, 407

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.