Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0003589

Physical Location & Seq

Genomic Coordinates Reverse (-)

12007254 .. 12008045

Gene Structure 792 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g19810.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGGATGGAATTCCTGACGGAATAGTGGGGAGGGTTGTCGGGAGTGTGGGCAATGAGTTGGCTGGCAATGGAGGTAGTGTCGTGGGCAAGGGGGTTGTCGGCACAGTAGATGGCAATGGTGGCAAGGTGGCTTTGGGAAGAGTTGGGGTAGTTGGAAGTGTAGGCATGGGGTTTGAAGGCAGTGGTGGTAATGTAGTCTTGGGTAGTGCTGGTACCGAGGGCAATGGAGGTAGGGTGGCCTTGGGCAGTGTTGGCGCCGAGGGTAGTGGAGGCAATGTCTTAGGCAGAGCGGGAATTGTGGGCACTACTGGCAATGCTGGTGGAGGAGCCGCTGCTGTGTCCAAAAGGTGGCGAGCTGCTTGGCTCATATGGGTACTTGAGAGTAACATCACAGCCAAAGACACAACGAAGAAAAGCTTAGAAGAAGTCATGATTGAGTTCAAAGGAGCTGCTAAGGCAAATGTTTCTTGTAGTGATGAGATGACAATACTACACTGGTTTTTATGGGGAAAGTATGTCAAAGATTTTGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

178

Amino Acids

17.46

Weight (kDa)

7.85

Isoelectric Point (pI)

9.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003589)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38090 AT4G38090 AT4G38090
fragaria_vesca	FvH4_1g19800 FvH4_1g19810 FvH4_1g19820 FvH4_1g19820 FvH4_1g19820 FvH4_1g19820
malus_domestica	MD15G1314800.v1.1
prunus_persica	Prupe.6G197200_v2.0.a1
pyrus_communis	pycom15g27800
rosa_chinensis	RchiOBHm_Chr2g0111411 RchiOBHm_Chr2g0111431
rosa_laevigata	RLG00000017894
rosa_multiflora	Rmu_ssc0000075.1_g000016
rosa_roxburghii	Rroxscaffold_2G00132400
rosa_rugosa	Rorug02G0173400 Rorug02G0173500 Rorug02G0173600 Rorug02G0173800 Rorug02G0173900 Rorug02G0173900 Rorug02G0173900 Rorug02G0173900
rosa_samantha	Rh2AG226700 Rh2BG238500 Rh2CG229800 Rh2CG230000 Rh2CG230200 Rh2CG230400 Rh2DG234100 Rh2DG234200 Rh2DG234300
rosa_wichuraiana	Rw2G017500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	212
AccB1I	GGYRCC	2 cut(s)	212, 254
AccB7I	CCANNNNNTGG	1 cut(s)	348
AccBSI	CCGCTC	1 cut(s)	290
AciI	CCGC	2 cut(s)	290, 330
AcsI	RAATTY	1 cut(s)	9
AcyI	GRCGYC	1 cut(s)	255
AfaI	GTAC	2 cut(s)	214, 375
AfiI	CCNNNNNNNGG	1 cut(s)	348
AgsI	TTSAA	2 cut(s)	176, 442
AluBI	AGCT	3 cut(s)	356, 417, 449
AluI	AGCT	3 cut(s)	356, 417, 449
AoxI	GGCC	1 cut(s)	237
ApeKI	GCWGC	3 cut(s)	332, 356, 449
ApoI	RAATTY	1 cut(s)	9
Asp718I	GGTACC	1 cut(s)	212
AspLEI	GCGC	1 cut(s)	257
BaeGI	GKGCMC	1 cut(s)	305
BanI	GGYRCC	2 cut(s)	212, 254
BbvI	GCAGC	3 cut(s)	319, 343, 436
BccI	CCATC	1 cut(s)	104
BfoI	RGCGCY	1 cut(s)	258
BisI	GCNGC	4 cut(s)	330, 333, 357, 450
BlsI	GCNGC	4 cut(s)	331, 334, 358, 451
BmiI	GGNNCC	3 cut(s)	214, 256, 328
Bpu10I	CCTNAGC	1 cut(s)	453
BpuEI	CTTGAG	1 cut(s)	398
BsaHI	GRCGYC	1 cut(s)	255
BsaJI	CCNNGG	3 cut(s)	216, 240, 258
BsaXI	ACNNNNNCTCC	6 cut(s)	63, 93, 219, 249, 261, 291
Bsc4I	CCNNNNNNNGG	1 cut(s)	348
Bse1I	ACTGG	2 cut(s)	313, 500
Bse3DI	GCAATG	6 cut(s)	58, 73, 121, 229, 280, 319
BseDI	CCNNGG	3 cut(s)	216, 240, 258
BseGI	GGATG	1 cut(s)	10
BseLI	CCNNNNNNNGG	1 cut(s)	348
BseMI	GCAATG	6 cut(s)	58, 73, 121, 229, 280, 319
BseNI	ACTGG	2 cut(s)	313, 500
BseRI	GAGGAG	1 cut(s)	339
BseSI	GKGCMC	1 cut(s)	305
BseXI	GCAGC	3 cut(s)	319, 343, 436
BshFI	GGCC	1 cut(s)	239
BshNI	GGYRCC	2 cut(s)	212, 254
BslI	CCNNNNNNNGG	1 cut(s)	348
BsnI	GGCC	1 cut(s)	239
Bsp1286I	GDGCHC	1 cut(s)	305
BspACI	CCGC	2 cut(s)	290, 330
BspANI	GGCC	1 cut(s)	239
BspHI	TCATGA	1 cut(s)	429
BspLI	GGNNCC	3 cut(s)	214, 256, 328
BspT107I	GGYRCC	2 cut(s)	212, 254
BsrBI	CCGCTC	1 cut(s)	290
BsrDI	GCAATG	6 cut(s)	58, 73, 121, 229, 280, 319
BsrI	ACTGG	2 cut(s)	313, 500
BssECI	CCNNGG	3 cut(s)	216, 240, 258
BssNI	GRCGYC	1 cut(s)	255
BssT1I	CCWWGG	1 cut(s)	240
Bst4CI	ACNGT	1 cut(s)	106
Bst6I	CTCTTC	1 cut(s)	133
BstACI	GRCGYC	1 cut(s)	255
BstC8I	GCNNGC	2 cut(s)	64, 354
BstDEI	CTNAG	3 cut(s)	280, 418, 453
BstF5I	GGATG	1 cut(s)	10
BstH2I	RGCGCY	1 cut(s)	258
BstHHI	GCGC	1 cut(s)	257
BstMWI	GCNNNNNNNGC	4 cut(s)	120, 252, 309, 455
BstSLI	GKGCMC	1 cut(s)	305
BstV1I	GCAGC	3 cut(s)	319, 343, 436
BsuRI	GGCC	1 cut(s)	239
BtsCI	GGATG	1 cut(s)	10
BtsI	GCAGTG	2 cut(s)	187, 253
BtsIMutI	CAGTG	3 cut(s)	187, 253, 493
Cac8I	GCNNGC	2 cut(s)	64, 354
CciI	TCATGA	1 cut(s)	429
CfoI	GCGC	1 cut(s)	257
Csp6I	GTAC	2 cut(s)	213, 374
CspCI	CAANNNNNGTGG	2 cut(s)	301, 336
CviAII	CATG	3 cut(s)	166, 430, 531
CviJI	RGCY	9 cut(s)	62, 131, 239, 329, 356, 364, 395, 417, 449
CviKI_1	RGCY	9 cut(s)	62, 131, 239, 329, 356, 364, 395, 417, 449
CviQI	GTAC	2 cut(s)	213, 374
DdeI	CTNAG	3 cut(s)	280, 418, 453
DinI	GGCGCC	1 cut(s)	256
Eam1104I	CTCTTC	1 cut(s)	133
EarI	CTCTTC	1 cut(s)	133
Eco130I	CCWWGG	1 cut(s)	240
EcoRI	GAATTC	1 cut(s)	9
EcoT14I	CCWWGG	1 cut(s)	240
EgeI	GGCGCC	1 cut(s)	256
EheI	GGCGCC	1 cut(s)	256
ErhI	CCWWGG	1 cut(s)	240
FaeI	CATG	3 cut(s)	169, 433, 534
FaiI	YATR	7 cut(s)	167, 368, 370, 431, 505, 516, 532
FalI	AAGNNNNNCTT	2 cut(s)	401, 433
FatI	CATG	3 cut(s)	165, 429, 530
FauI	CCCGC	1 cut(s)	283
FauNDI	CATATG	1 cut(s)	368
Fnu4HI	GCNGC	4 cut(s)	330, 333, 357, 450
FokI	GGATG	1 cut(s)	17
Fsp4HI	GCNGC	4 cut(s)	330, 333, 357, 450
GlaI	GCGC	1 cut(s)	256
GluI	GCNGC	4 cut(s)	330, 333, 357, 450
HaeII	RGCGCY	1 cut(s)	258
HaeIII	GGCC	1 cut(s)	239
HhaI	GCGC	1 cut(s)	257
Hin1I	GRCGYC	1 cut(s)	255
Hin1II	CATG	3 cut(s)	169, 433, 534
Hin6I	GCGC	1 cut(s)	255
HinP1I	GCGC	1 cut(s)	255
HindIII	AAGCTT	1 cut(s)	415
Hpy188III	TCNNGA	3 cut(s)	14, 40, 430
HpyAV	CCTTC	1 cut(s)	170
HpyCH4III	ACNGT	1 cut(s)	106
HpyCH4V	TGCA	1 cut(s)	530
HpyF10VI	GCNNNNNNNGC	4 cut(s)	120, 252, 309, 455
HpyF3I	CTNAG	3 cut(s)	280, 418, 453
Hsp92I	GRCGYC	1 cut(s)	255
Hsp92II	CATG	3 cut(s)	169, 433, 534
HspAI	GCGC	1 cut(s)	255
KasI	GGCGCC	1 cut(s)	254
KpnI	GGTACC	1 cut(s)	216
LmnI	GCTCC	2 cut(s)	326, 446
LpnPI	CCDG	6 cut(s)	27, 48, 195, 294, 303, 481
Lsp1109I	GCAGC	3 cut(s)	319, 343, 436
MaeIII	GTNAC	1 cut(s)	383
MbiI	CCGCTC	1 cut(s)	290
MboII	GAAGA	3 cut(s)	150, 421, 434
MhlI	GDGCHC	1 cut(s)	305
MluCI	AATT	2 cut(s)	9, 294
Mly113I	GGCGCC	1 cut(s)	255
MmeI	TCCRAC	1 cut(s)	133
MnlI	CCTC	7 cut(s)	24, 65, 211, 221, 253, 263, 317
MspA1I	CMGCKG	1 cut(s)	332
MwoI	GCNNNNNNNGC	4 cut(s)	120, 252, 309, 455
NarI	GGCGCC	1 cut(s)	255
NdeI	CATATG	1 cut(s)	368
NlaIII	CATG	3 cut(s)	169, 433, 534
NlaIV	GGNNCC	3 cut(s)	214, 256, 328
NmeAIII	GCCGAG	1 cut(s)	283
PagI	TCATGA	1 cut(s)	429
PflMI	CCANNNNNTGG	1 cut(s)	348
PkrI	GCNGC	4 cut(s)	331, 334, 358, 451
PluTI	GGCGCC	1 cut(s)	258
PspN4I	GGNNCC	3 cut(s)	214, 256, 328
RsaI	GTAC	2 cut(s)	214, 375
RsaNI	GTAC	2 cut(s)	213, 374
SatI	GCNGC	4 cut(s)	330, 333, 357, 450
SduI	GDGCHC	1 cut(s)	305
SetI	ASST	7 cut(s)	76, 129, 232, 350, 358, 419, 451
SfoI	GGCGCC	1 cut(s)	256
SmlI	CTYRAG	1 cut(s)	377
SmoI	CTYRAG	1 cut(s)	377
Sse9I	AATT	2 cut(s)	9, 294
SsiI	CCGC	2 cut(s)	290, 330
SspDI	GGCGCC	1 cut(s)	254
StyI	CCWWGG	1 cut(s)	240
TaaI	ACNGT	1 cut(s)	106
TasI	AATT	2 cut(s)	9, 294
TauI	GCSGC	1 cut(s)	332
TscAI	CASTG	3 cut(s)	187, 253, 500
TseI	GCWGC	3 cut(s)	332, 356, 449
TspGWI	ACGGA	1 cut(s)	33
TspRI	CASTG	3 cut(s)	187, 253, 500
Van91I	CCANNNNNTGG	1 cut(s)	348
XapI	RAATTY	1 cut(s)	9

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.