Rh2DG234200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0003589
Physical Location & Seq
Reverse (-)
23300220 .. 23300807
588 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG234200.1

Sequence Viewer

Length: 588 bp
ATGGATGGAATTGCTGATGGAATAGTGGGGATTGTTGTTGGGAGTGTGGGCAGTGAGTTGGCTGGCAATGGAGGTAGAGTAGTTGGCAAGGGTGTTGTAGGCAATGCTGATTTCGGCAACGATGGGATTGATGGCAATGGCGGCAATGTGGCCTTTGGCAGAGATGGGGCAGTTGGAAGTGAAGGCAAAGGGTTTGAGGGCAGAGGTGGCAATGTGGCCTTGGGCAGTGTTGGTAGTGAGCTGGCTGGCAATGGAGGTAGTGTCGCGGGCAAGGGGGTTGTCGGCACAGTAGGCAATGCTGATTTTGGCAAAGATGGGATTACAGGTGGGGTGATAGGCGGTGTAGGCAATGGGGTAGATGGCAATGGTGGCAAAGTGGCTTTTGGAAGAGTTGGGGTAGTTGGAAGTGTAGGCAAGGGGTTTGAGGGCAATGGTGGCAGTGTTGGTACCGAAGGCAACGGGGCCAGGGTGGCCTTAGGCAGTGTTGGTGCCGAGGGTAGTGGAGGCAATGCAGTCTTGGGTAGAGAGGGAATTGTGGGTACTACTGGCAATGCTGGTGGAGGAGCTGCTGCTGTGTCCAAGAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

195

Amino Acids

17.59

Weight (kDa)

4.94

Isoelectric Point (pI)

-11.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 446
AccB1I GGYRCC 2 cut(s) 446, 488
AccII CGCG 1 cut(s) 266
AciI CCGC 3 cut(s) 141, 266, 339
AfaI GTAC 2 cut(s) 448, 541
AjnI CCWGG 1 cut(s) 464
AluBI AGCT 2 cut(s) 241, 566
AluI AGCT 2 cut(s) 241, 566
AoxI GGCC 4 cut(s) 150, 216, 462, 471
ApeKI GCWGC 2 cut(s) 566, 569
Asp718I GGTACC 1 cut(s) 446
AspS9I GGNCC 1 cut(s) 462
AsuHPI GGTGA 1 cut(s) 343
AxyI CCTNAGG 1 cut(s) 475
BanI GGYRCC 2 cut(s) 446, 488
BbvI GCAGC 2 cut(s) 553, 556
BccI CCATC 6 cut(s) 11, 116, 125, 158, 308, 353
BciT130I CCWGG 1 cut(s) 466
BglI GCCNNNNNGGC 1 cut(s) 470
BisI GCNGC 3 cut(s) 142, 567, 570
BlsI GCNGC 3 cut(s) 143, 568, 571
Bme1390I CCNGG 1 cut(s) 466
BmgT120I GGNCC 1 cut(s) 462
BmiI GGNNCC 3 cut(s) 448, 463, 490
BmrFI CCNGG 1 cut(s) 466
BsaJI CCNNGG 3 cut(s) 219, 465, 492
BsaXI ACNNNNNCTCC 4 cut(s) 63, 93, 246, 276
Bse1I ACTGG 1 cut(s) 550
Bse21I CCTNAGG 1 cut(s) 475
BseBI CCWGG 1 cut(s) 466
BseDI CCNNGG 3 cut(s) 219, 465, 492
BseGI GGATG 1 cut(s) 10
BseNI ACTGG 1 cut(s) 550
BseRI GAGGAG 1 cut(s) 576
BseXI GCAGC 2 cut(s) 553, 556
Bsh1236I CGCG 1 cut(s) 266
BshFI GGCC 4 cut(s) 152, 218, 464, 473
BshNI GGYRCC 2 cut(s) 446, 488
BsnI GGCC 4 cut(s) 152, 218, 464, 473
BspACI CCGC 3 cut(s) 141, 266, 339
BspANI GGCC 4 cut(s) 152, 218, 464, 473
BspFNI CGCG 1 cut(s) 266
BspLI GGNNCC 3 cut(s) 448, 463, 490
BspT107I GGYRCC 2 cut(s) 446, 488
BsrI ACTGG 1 cut(s) 550
BssECI CCNNGG 3 cut(s) 219, 465, 492
BssT1I CCWWGG 1 cut(s) 219
Bst2UI CCWGG 1 cut(s) 466
Bst4CI ACNGT 1 cut(s) 289
Bst6I CTCTTC 1 cut(s) 382
BstC8I GCNNGC 4 cut(s) 64, 243, 247, 268
BstDEI CTNAG 1 cut(s) 475
BstF5I GGATG 1 cut(s) 10
BstFNI CGCG 1 cut(s) 266
BstMWI GCNNNNNNNGC 7 cut(s) 141, 207, 291, 345, 369, 435, 470
BstNI CCWGG 1 cut(s) 466
BstSCI CCNGG 1 cut(s) 464
BstUI CGCG 1 cut(s) 266
BstV1I GCAGC 2 cut(s) 553, 556
Bsu36I CCTNAGG 1 cut(s) 475
BsuRI GGCC 4 cut(s) 152, 218, 464, 473
BtsCI GGATG 1 cut(s) 10
BtsI GCAGTG 4 cut(s) 58, 232, 445, 487
BtsIMutI CAGTG 4 cut(s) 58, 232, 445, 487
Cac8I GCNNGC 4 cut(s) 64, 243, 247, 268
Cfr13I GGNCC 1 cut(s) 462
Csp6I GTAC 2 cut(s) 447, 540
CspCI CAANNNNNGTGG 2 cut(s) 538, 573
CviJI RGCY 9 cut(s) 62, 152, 218, 241, 245, 380, 464, 473, 566
CviKI_1 RGCY 9 cut(s) 62, 152, 218, 241, 245, 380, 464, 473, 566
CviQI GTAC 2 cut(s) 447, 540
DdeI CTNAG 1 cut(s) 475
Eam1104I CTCTTC 1 cut(s) 382
EarI CTCTTC 1 cut(s) 382
Eco130I CCWWGG 1 cut(s) 219
Eco81I CCTNAGG 1 cut(s) 475
EcoRII CCWGG 1 cut(s) 464
EcoT14I CCWWGG 1 cut(s) 219
ErhI CCWWGG 1 cut(s) 219
FauI CCCGC 1 cut(s) 259
Fnu4HI GCNGC 3 cut(s) 142, 567, 570
FokI GGATG 1 cut(s) 17
Fsp4HI GCNGC 3 cut(s) 142, 567, 570
GluI GCNGC 3 cut(s) 142, 567, 570
HaeIII GGCC 4 cut(s) 152, 218, 464, 473
HphI GGTGA 1 cut(s) 343
HpyAV CCTTC 2 cut(s) 176, 446
HpyCH4III ACNGT 1 cut(s) 289
HpyCH4V TGCA 1 cut(s) 512
HpyF10VI GCNNNNNNNGC 7 cut(s) 141, 207, 291, 345, 369, 435, 470
HpyF3I CTNAG 1 cut(s) 475
KpnI GGTACC 1 cut(s) 450
LmnI GCTCC 1 cut(s) 563
LpnPI CCDG 8 cut(s) 48, 227, 231, 309, 451, 478, 531, 540
Lsp1109I GCAGC 2 cut(s) 553, 556
MboII GAAGA 1 cut(s) 399
MluCI AATT 2 cut(s) 9, 531
MmeI TCCRAC 2 cut(s) 154, 382
MspR9I CCNGG 1 cut(s) 466
MvaI CCWGG 1 cut(s) 466
MvnI CGCG 1 cut(s) 266
MwoI GCNNNNNNNGC 7 cut(s) 141, 207, 291, 345, 369, 435, 470
NlaIV GGNNCC 3 cut(s) 448, 463, 490
NmeAIII GCCGAG 1 cut(s) 517
PkrI GCNGC 3 cut(s) 143, 568, 571
Psp6I CCWGG 1 cut(s) 464
PspGI CCWGG 1 cut(s) 464
PspN4I GGNNCC 3 cut(s) 448, 463, 490
PspPI GGNCC 1 cut(s) 462
RsaI GTAC 2 cut(s) 448, 541
RsaNI GTAC 2 cut(s) 447, 540
SatI GCNGC 3 cut(s) 142, 567, 570
Sau96I GGNCC 1 cut(s) 462
ScrFI CCNGG 1 cut(s) 466
SetI ASST 7 cut(s) 76, 208, 243, 259, 328, 568, 587
SfiI GGCCNNNNNGGCC 1 cut(s) 470
Sse9I AATT 2 cut(s) 9, 531
SsiI CCGC 3 cut(s) 141, 266, 339
StyD4I CCNGG 1 cut(s) 464
StyI CCWWGG 1 cut(s) 219
TaaI ACNGT 1 cut(s) 289
TasI AATT 2 cut(s) 9, 531
TauI GCSGC 1 cut(s) 144
TscAI CASTG 4 cut(s) 58, 232, 445, 487
TseI GCWGC 2 cut(s) 566, 569
TspRI CASTG 4 cut(s) 58, 232, 445, 487
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.