AT4G38120

HEAT repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0003181
Physical Location & Seq
Reverse (-)
17888501 .. 17896255
7755 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G38120.4

Sequence Viewer

Length: 3498 bp
ATGTTCACGGCGGCAGCTTCGTCAAGCGTGGGAAGGTGGCGGACGGCGTTTCTCTCTCTCAGGGACGAAATCTCAACCACTCCACCGCCGCCGGTTCCTCTGTTGCTCGAGGATCTACTCTTCTCTCAATCCCATTCCCTTATCTCTGCCGTCTCTCACCTCCCACTGCACGAGCTCACTTCCGATTGCTTGTTCCTGCTCGATTTGGTTTCCAAAGCTGATGGTCCTGACTGGATCCCTGTCTCTCGTCATACTTGTCAACTGATTCACGATGTTTGTGCTCGTCTACTTTTCCAACTAAATTCTTCGTCATGGCCGCTCCTTCTTCACTCTTTTGCTTCTGTCTTGGAGTTTCTTCTTCGCCAACCCATGCCTTCTTCACCTTATTCCGCTGCCTATTTCTCCAGAATCGAACCTGTGATCCAATGCTTCGAGACTTTAAGACGTTTGGCCCCTATGCATCCGGAGAACATTCATCTAGTCAAGTTTCTTGTGCGCGTAGTTCCTTTATTACACCAGGATTTAGTTTTATCCTATGGTTTCTCAAATCAAGACCCTTCTCCTACTTTACTTGTGGAAAAGAAACTGCCTCAACAGAATCGCTTATGGGATTCCATGGCTCTTGCCTTTGACATGTTTGGTAGAGCATTTTCTCTATCTGAGTCTTTGTTTCCTACTGACGTCTCCCAATGCACGCTAGAGGTTCTAAGGAAAGTAATGGACGTATTAGCATCTAAGGGCCAGCTTGTCGAAGACCGATTCATGTGGAGGTATATGCCTTTGGTTTTGTGGAGACTACAATTTACTCCTTTTTTTCTGGGTTCTATTAGACTTGTTGCCCTCTTAGCGTCATTGAGAATGTTTTTCTGTTTTGGACTTACTGGCCCACCTCAGTTATCAGTTTCTGATGTTGTTCACAACGATAAGCATTTGAATGTCAAGCTTTCTCCATTGATTTCTGGAGTAAGTAAGAATGCCAAGAATACTCCTTATAGGCCACCCCACTTGCGCAAGAGGGATGATTTGAACACTAGGCAGCCAGTGTCTTCAAGCTGGCGGCGCCTATCTGCTCATGATTCTGGTAGTTCTGATGTTATATCATCAGATTCCGATTTTAGTGACAGTGACGGCTCCGTACCGGATTCTTATTTTGCCCAAAGCTCCAAGGTTAGAATAGCTGCAATTGTTTGCATACAGGATCTTTGCCAGGCTGATTCAAAGTCATTTACCACTCAGTGGGTGACTCTCTTTCCAACAAGTGATGTACTCAAGCCAAGGAAGTTTGAAGCTACTCTAATGACCTGCTTGCTTTTTGATCCTCATTTGAAGGTAAGGATTGCATCTGCGTCAGCTCTTGCCACCATGATGGATGGGCCTTCATCTATTTTCCTTCAAGTGGCAGAGTACAAGGAATCTACTAAATATGGATCATTTATGCCCCTCTCCAATTCCCTTGGTCTAATATTAATGCAACTCCACACAGGCATTCTACATTTGATTCACAGTGATAATCATGGTAGATTGTTGATTCAGCTGTTCAAGATCCTCTTGCTTCTAATATCAAGCACACCTTACTCGAGAATGCCGGGAGAATTGCTGCCAAAAGTTATAATGTCTCTGCATGCTAGGATTAATGAGGGCTTTCCTTTCAAAAATGATAAAACTGGTCTGCTGGTTGCCGCAATAGGTTGCCTGTCAGCTGCATTTTCCACCTTTCCTCCTCAAATGAAAGTGCATAATATGCTTTTGGATGAGACATCAGCAGGATTCAATGGATGTGAATGGAATTCAGGAGTTCTTTCTACTTTATTTCGTTTTGCTGAGCAATTTTCTGACGCATCAACATGCATTGAGGCTCTTCAGGTCCTCCGAGCTGTGGCTCTCAATTATCCAACCTTAGTGCCAGCATATTGGGAAAGGGTCTCTATCCTCGTGTATAAACTTTTGCAGTCTGCTGTTGTTGAAGATTCTCCAACGACATGGAAGTCTTCGGTTAGAGAGTCTGTTGGATATAATGGGGATAAAGTCCTTACAGCTGCTATTAAGGTTTTGGATGGATGCCTTCGCGCAATATCTGGATTTAAGGGAACCGAAGATCTTCAGTATGATAGATTAATGGATACACCATTTACATCTGACTGCATAAGGTCAATAAGAATCTCATCTGCACCATCATATGGATTTGATAATACCCAAGAGCCAATCTTTCAGGCAGGATGTGACCAATGGTCTGAGGCTATTCGTAAACATATAGTTCTGGTGTTACACCATGGTTCTGCAGTGGTGAGGAGCACTACAGTTACTTGCTTTGCTGGTATTACATCCTCCATATTTTCCGCTTTCAATAAGCAGGAAAAGGACTTTATTACTTCATCAATTATAACCGCTGCATTGCATGACAAAACACCTTCAGTCAGATCAGCAGCTTGCCGAGCGATTGGTGTTATTTCATGTTTTCCAGAAACTTCTTTAAGTGCGGAGATATATGAAAAATTTATCTTAGCTGTTGAAGCGAATACCCGGGACTCCTTGACCTCGGTGCGTATAACAGCATCATGGGCTTTGGCCAATCTATGCGATGCTCTGCGATACCGCGTTGATGATAGGTCCTTTGAAGGATTGAAGACAACTTCACAAGTTGTGGATGCACTAATAGAATGTGCTTTGCGCCTAACTGAGGATGGGGACAAGGTTAAATCCAATGCAGTTCGGGCACTGGGGAGTATTTCAAAATATGTAAAATTGAGATGCATGACAAGTATAAAGTCAGTGGACCAAGATGTGTTACCTTTTCCCCATCAACAGTCATCAAATTCTCACCATCTATCCTGCGCGGTAGATACAAGGTGGTTGGAGAGAACCGTGCAAGCATTTCTTTCCTGTGTTACTACTGGTAATGTTAAGGTTCAATGGAATGTTTGTCATGCGTTGAGCAATTTATTCTCCAATGAGACAGTAAAACTGCAAGATATGGATTGGGCTCCAAGTGTTTTTAGTATCTTACTATTGCTACTTCGTGATGCATCAAACTTTAAGATAAGAATACAAGCTGCTTCCGCTTTAGCTGTCCCAGCAACCCCACTTGCTTATGGGAGATCATTCCCTGATGTTGTCAAAGGTGTAGAGCATACTTTACAAAGTCTCCATTCTGACAGAGAGACGACTCCAGCAAATTTCAAATATAAGAGGTCGCTTGAGAATCAGTTAACGTCAACCATGCTGCATCTCCTGAGCCTAGTTTCAAGCTGTCATTTCGAAGCGTTGTCAGAATTTCTTATAAGAAAAGCCTCATTTCTAGAGGAGTGGTTGAGAGGATTGTGTGTGACATTGAAAGAGGAAGATAATGTTTCTGGATCAAGCGGCACAAGCACTTCGGGTGGGAAGCAGAAGAAAGAGTTGATCTCTAGAGCTATACGGTCGCTTGCCAGAAGTTTGCGGGCTGGACATAGCTCTGAAATGGCTCAAAAGTTGCAGGAGTTAGATAGCAATGTGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4042 HEAT

Protein Analysis

1165

Amino Acids

129.4

Weight (kDa)

8.05

Isoelectric Point (pI)

45.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4042 PF13251 389 - 573 4.8e-60 Domain of unknown function (DUF4042)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 1610, 2381, 3278
AasI GACNNNNNNGTC 1 cut(s) 1984
AatII GACGTC 1 cut(s) 684
Acc16I TGCGCA 1 cut(s) 1010
Acc36I ACCTGC 1 cut(s) 1310
AccB1I GGYRCC 1 cut(s) 1059
AccB7I CCANNNNNTGG 2 cut(s) 1236, 2177
AccBSI CCGCTC 1 cut(s) 319
AccI GTMKAC 1 cut(s) 286
AccII CGCG 4 cut(s) 498, 2067, 2595, 2834
AccIII TCCGGA 1 cut(s) 463
AclWI GGATC 9 cut(s) 120, 229, 242, 415, 1206, 1310, 1435, 1537, 3361
AcoI YGGCCR 2 cut(s) 314, 2565
AcsI RAATTY 6 cut(s) 301, 1786, 2492, 2812, 3172, 3269
AcuI CTGAAG 3 cut(s) 1844, 2084, 2394
AcyI GRCGYC 2 cut(s) 681, 1060
AdeI CACNNNGTG 1 cut(s) 1236
AfaI GTAC 3 cut(s) 1137, 1266, 1406
AfiI CCNNNNNNNGG 5 cut(s) 1236, 1396, 1876, 2177, 2677
AflIII ACRYGT 1 cut(s) 633
AhdI GACNNNNNGTC 1 cut(s) 2227
AjnI CCWGG 2 cut(s) 516, 1206
AloI GAACNNNNNNTCC 2 cut(s) 405, 437
Alw21I GWGCWC 3 cut(s) 177, 283, 2294
AlwI GGATC 9 cut(s) 120, 229, 242, 415, 1206, 1310, 1435, 1537, 3361
AlwNI CAGNNNCTG 1 cut(s) 905
Ama87I CYCGRG 3 cut(s) 107, 1576, 2520
Aor13HI TCCGGA 1 cut(s) 463
AoxI GGCC 7 cut(s) 314, 450, 739, 883, 995, 1373, 2565
ApoI RAATTY 6 cut(s) 301, 1786, 2492, 2812, 3172, 3269
AseI ATTAAT 3 cut(s) 1466, 1632, 2114
Asp700I GAANNNNTTC 1 cut(s) 2097
AspLEI GCGC 6 cut(s) 498, 1011, 1062, 2069, 2670, 2834
AspS9I GGNCC 8 cut(s) 224, 451, 739, 884, 1373, 1864, 2607, 2773
AsuC2I CCSGG 3 cut(s) 1587, 2521, 2522
AsuHPI GGTGA 5 cut(s) 149, 372, 1252, 2296, 2810
AsuII TTCGAA 1 cut(s) 3255
AvaI CYCGRG 3 cut(s) 107, 1576, 2520
AvaII GGWCC 4 cut(s) 224, 1864, 2607, 2773
BaeGI GKGCMC 1 cut(s) 2716
BalI TGGCCA 1 cut(s) 2567
BamHI GGATCC 1 cut(s) 234
BanI GGYRCC 1 cut(s) 1059
BanII GRGCYC 2 cut(s) 177, 2983
BauI CACGAG 2 cut(s) 170, 1931
BbsI GAAGAC 4 cut(s) 759, 1038, 1980, 2630
Bbv12I GWGCWC 3 cut(s) 177, 283, 2294
BccI CCATC 8 cut(s) 215, 1360, 1364, 2048, 2179, 2675, 2805, 2829
BceAI ACGGC 4 cut(s) 24, 60, 134, 1144
BcgI CGANNNNNNTGC 2 cut(s) 260, 294
BciT130I CCWGG 2 cut(s) 518, 1208
BciVI GTATCC 1 cut(s) 2113
BcnI CCSGG 3 cut(s) 1587, 2521, 2522
BfaI CTAG 7 cut(s) 479, 698, 1032, 1626, 3236, 3296, 3405
BfmI CTRYAG 2 cut(s) 2277, 2295
BfoI RGCGCY 1 cut(s) 1063
BfuAI ACCTGC 1 cut(s) 1310
BfuI GTATCC 1 cut(s) 2113
BglII AGATCT 1 cut(s) 2095
BlpI GCTNAGC 1 cut(s) 1821
Bme1390I CCNGG 5 cut(s) 518, 1208, 1587, 2521, 2522
Bme18I GGWCC 4 cut(s) 224, 1864, 2607, 2773
BmeRI GACNNNNNGTC 1 cut(s) 2227
BmeT110I CYCGRG 3 cut(s) 107, 1576, 2520
BmgT120I GGNCC 8 cut(s) 224, 451, 739, 884, 1373, 1864, 2607, 2773
BmiI GGNNCC 7 cut(s) 96, 236, 453, 1061, 1132, 2089, 2982
BmrFI CCNGG 5 cut(s) 518, 1208, 1587, 2521, 2522
BmrI ACTGGG 1 cut(s) 2726
BmuI ACTGGG 1 cut(s) 2726
BpiI GAAGAC 4 cut(s) 759, 1038, 1980, 2630
BplI GAGNNNNNCTC 2 cut(s) 3386, 3418
BpmI CTGGAG 3 cut(s) 388, 981, 3150
Bpu10I CCTNAGC 1 cut(s) 3230
Bpu1102I GCTNAGC 1 cut(s) 1821
Bpu14I TTCGAA 1 cut(s) 3255
BpuEI CTTGAG 2 cut(s) 1253, 3215
BpuMI CCSGG 3 cut(s) 1587, 2521, 2522
BsaHI GRCGYC 2 cut(s) 681, 1060
BsaI GGTCTC 1 cut(s) 1927
BsaJI CCNNGG 7 cut(s) 615, 1164, 1274, 1453, 2269, 2520, 2535
BsaWI WCCGGW 2 cut(s) 463, 1138
BsaXI ACNNNNNCTCC 4 cut(s) 1702, 1732, 3126, 3156
Bsc4I CCNNNNNNNGG 5 cut(s) 1236, 1396, 1876, 2177, 2677
Bse118I RCCGGY 1 cut(s) 91
Bse1I ACTGG 6 cut(s) 236, 886, 1040, 1669, 2721, 2896
Bse3DI GCAATG 2 cut(s) 2390, 3493
BseAI TCCGGA 1 cut(s) 463
BseBI CCWGG 2 cut(s) 518, 1208
BseDI CCNNGG 7 cut(s) 615, 1164, 1274, 1453, 2269, 2520, 2535
BseLI CCNNNNNNNGG 5 cut(s) 1236, 1396, 1876, 2177, 2677
BseMI GCAATG 2 cut(s) 2390, 3493
BseMII CTCAG 8 cut(s) 73, 651, 905, 1247, 1812, 2223, 2667, 3221
BseNI ACTGG 6 cut(s) 236, 886, 1040, 1669, 2721, 2896
BseRI GAGGAG 3 cut(s) 1710, 2302, 3314
BseSI GKGCMC 1 cut(s) 2716
BseYI CCCAGC 1 cut(s) 3070
BsgI GTGCAG 2 cut(s) 152, 2151
Bsh1236I CGCG 4 cut(s) 498, 2067, 2595, 2834
Bsh1285I CGRYCG 1 cut(s) 3419
BshFI GGCC 7 cut(s) 316, 452, 741, 885, 997, 1375, 2567
BshNI GGYRCC 1 cut(s) 1059
BsiEI CGRYCG 1 cut(s) 3419
BsiHKAI GWGCWC 3 cut(s) 177, 283, 2294
BsiHKCI CYCGRG 3 cut(s) 107, 1576, 2520
BsiSI CCGG 5 cut(s) 92, 464, 1139, 1586, 2521
BslFI GGGAC 4 cut(s) 77, 2537, 2699, 3053
BslI CCNNNNNNNGG 5 cut(s) 1236, 1396, 1876, 2177, 2677
BsmBI CGTCTC 3 cut(s) 157, 688, 3152
BsmFI GGGAC 4 cut(s) 77, 2537, 2699, 3053
BsmI GAATGC 3 cut(s) 979, 1485, 1587
BsnI GGCC 7 cut(s) 316, 452, 741, 885, 997, 1375, 2567
Bso31I GGTCTC 1 cut(s) 1927
BsoBI CYCGRG 3 cut(s) 107, 1576, 2520
Bsp119I TTCGAA 1 cut(s) 3255
Bsp1286I GDGCHC 5 cut(s) 177, 283, 2294, 2716, 2983
Bsp13I TCCGGA 1 cut(s) 463
Bsp1720I GCTNAGC 1 cut(s) 1821
Bsp19I CCATGG 2 cut(s) 615, 2269
BspANI GGCC 7 cut(s) 316, 452, 741, 885, 997, 1375, 2567
BspCNI CTCAG 8 cut(s) 72, 652, 904, 1246, 1813, 2224, 2668, 3222
BspEI TCCGGA 1 cut(s) 463
BspFNI CGCG 4 cut(s) 498, 2067, 2595, 2834
BspHI TCATGA 1 cut(s) 1072
BspLI GGNNCC 7 cut(s) 96, 236, 453, 1061, 1132, 2089, 2982
BspMAI CTGCAG 1 cut(s) 2281
BspMI ACCTGC 1 cut(s) 1310
BspPI GGATC 9 cut(s) 120, 229, 242, 415, 1206, 1310, 1435, 1537, 3361
BspQI GCTCTTC 1 cut(s) 1863
BspT104I TTCGAA 1 cut(s) 3255
BspT107I GGYRCC 1 cut(s) 1059
BspTNI GGTCTC 1 cut(s) 1927
BsrBI CCGCTC 1 cut(s) 319
BsrDI GCAATG 2 cut(s) 2390, 3493
BsrFI RCCGGY 1 cut(s) 91
BsrI ACTGG 6 cut(s) 236, 886, 1040, 1669, 2721, 2896
BssAI RCCGGY 1 cut(s) 91
BssECI CCNNGG 7 cut(s) 615, 1164, 1274, 1453, 2269, 2520, 2535
BssNI GRCGYC 2 cut(s) 681, 1060
BssSI CACGAG 2 cut(s) 170, 1931
BssT1I CCWWGG 5 cut(s) 615, 1164, 1274, 1453, 2269
Bst2BI CACGAG 2 cut(s) 170, 1931
Bst2UI CCWGG 2 cut(s) 518, 1208
Bst4CI ACNGT 7 cut(s) 1124, 1505, 2299, 2805, 2863, 2956, 3417
Bst6I CTCTTC 2 cut(s) 125, 1863
BstACI GRCGYC 2 cut(s) 681, 1060
BstAPI GCANNNNNTGC 1 cut(s) 1741
BstBI TTCGAA 1 cut(s) 3255
BstDSI CCRYGG 2 cut(s) 615, 2269
BstENI CCTNNNNNAGG 1 cut(s) 2675
BstFNI CGCG 4 cut(s) 498, 2067, 2595, 2834
BstH2I RGCGCY 1 cut(s) 1063
BstHHI GCGC 6 cut(s) 498, 1011, 1062, 2069, 2670, 2834
BstMCI CGRYCG 1 cut(s) 3419
BstNI CCWGG 2 cut(s) 518, 1208
BstNSI RCATGY 3 cut(s) 637, 1625, 1848
BstSCI CCNGG 5 cut(s) 516, 1206, 1585, 2519, 2520
BstSFI CTRYAG 2 cut(s) 2277, 2295
BstSLI GKGCMC 1 cut(s) 2716
BstUI CGCG 4 cut(s) 498, 2067, 2595, 2834
BstV2I GAAGAC 4 cut(s) 759, 1038, 1980, 2630
BstX2I RGATCY 5 cut(s) 112, 234, 1198, 1542, 2095
BstXI CCANNNNNNTGG 3 cut(s) 1366, 1911, 1980
BstYI RGATCY 5 cut(s) 112, 234, 1198, 1542, 2095
BsuI GTATCC 1 cut(s) 2113
BsuRI GGCC 7 cut(s) 316, 452, 741, 885, 997, 1375, 2567
BtgI CCRYGG 2 cut(s) 615, 2269
BtgZI GCGATG 1 cut(s) 2592
BtsI GCAGTG 2 cut(s) 164, 2286
BtsIMutI CAGTG 8 cut(s) 164, 1047, 1129, 1241, 1510, 2286, 2714, 2775
BveI ACCTGC 1 cut(s) 1310
CaiI CAGNNNCTG 1 cut(s) 905
CciI TCATGA 1 cut(s) 1072
CfoI GCGC 6 cut(s) 498, 1011, 1062, 2069, 2670, 2834
Cfr10I RCCGGY 1 cut(s) 91
Cfr13I GGNCC 8 cut(s) 224, 451, 739, 884, 1373, 1864, 2607, 2773
Cfr9I CCCGGG 1 cut(s) 2520
CseI GACGC 3 cut(s) 837, 1335, 1844
Csp6I GTAC 3 cut(s) 1136, 1265, 1405
CspCI CAANNNNNGTGG 2 cut(s) 987, 1022
CviQI GTAC 3 cut(s) 1136, 1265, 1405
DinI GGCGCC 1 cut(s) 1061
DraIII CACNNNGTG 1 cut(s) 1236
DrdI GACNNNNNNGTC 1 cut(s) 1984
DriI GACNNNNNGTC 1 cut(s) 2227
DseDI GACNNNNNNGTC 1 cut(s) 1984
EaeI YGGCCR 2 cut(s) 314, 2565
Eam1104I CTCTTC 2 cut(s) 125, 1863
Eam1105I GACNNNNNGTC 1 cut(s) 2227
EarI CTCTTC 2 cut(s) 125, 1863
EciI GGCGGA 1 cut(s) 55
Ecl136II GAGCTC 1 cut(s) 175
Eco130I CCWWGG 5 cut(s) 615, 1164, 1274, 1453, 2269
Eco24I GRGCYC 2 cut(s) 177, 2983
Eco31I GGTCTC 1 cut(s) 1927
Eco47I GGWCC 4 cut(s) 224, 1864, 2607, 2773
Eco53kI GAGCTC 1 cut(s) 175
Eco57I CTGAAG 3 cut(s) 1844, 2084, 2394
Eco88I CYCGRG 3 cut(s) 107, 1576, 2520
EcoICRI GAGCTC 1 cut(s) 175
EcoNI CCTNNNNNAGG 1 cut(s) 2675
EcoO109I RGGNCCY 2 cut(s) 1864, 2607
EcoRI GAATTC 1 cut(s) 1786
EcoRII CCWGG 2 cut(s) 516, 1206
EcoT14I CCWWGG 5 cut(s) 615, 1164, 1274, 1453, 2269
EcoT22I ATGCAT 4 cut(s) 462, 1850, 2753, 3025
EcoT38I GRGCYC 2 cut(s) 177, 2983
EgeI GGCGCC 1 cut(s) 1061
EheI GGCGCC 1 cut(s) 1061
ErhI CCWWGG 5 cut(s) 615, 1164, 1274, 1453, 2269
Esp3I CGTCTC 3 cut(s) 157, 688, 3152
FalI AAGNNNNNCTT 6 cut(s) 1532, 1564, 1555, 1587, 2859, 2891
FaqI GGGAC 4 cut(s) 77, 2537, 2699, 3053
FauI CCCGC 1 cut(s) 3429
FauNDI CATATG 1 cut(s) 2176
FblI GTMKAC 1 cut(s) 286
FriOI GRGCYC 2 cut(s) 177, 2983
FspBI CTAG 7 cut(s) 479, 698, 1032, 1626, 3236, 3296, 3405
FspI TGCGCA 1 cut(s) 1010
GlaI GCGC 6 cut(s) 497, 1010, 1061, 2068, 2669, 2833
GsaI CCCAGC 1 cut(s) 3074
GsuI CTGGAG 3 cut(s) 388, 981, 3150
HaeII RGCGCY 1 cut(s) 1063
HaeIII GGCC 7 cut(s) 316, 452, 741, 885, 997, 1375, 2567
HapII CCGG 5 cut(s) 92, 464, 1139, 1586, 2521
HgaI GACGC 3 cut(s) 837, 1335, 1844
HhaI GCGC 6 cut(s) 498, 1011, 1062, 2069, 2670, 2834
Hin1I GRCGYC 2 cut(s) 681, 1060
Hin6I GCGC 6 cut(s) 496, 1009, 1060, 2067, 2668, 2832
HinP1I GCGC 6 cut(s) 496, 1009, 1060, 2067, 2668, 2832
HincII GTYRAC 3 cut(s) 260, 3207, 3213
HindII GTYRAC 3 cut(s) 260, 3207, 3213
HindIII AAGCTT 1 cut(s) 941
HpaI GTTAAC 1 cut(s) 3207
HpaII CCGG 5 cut(s) 92, 464, 1139, 1586, 2521
HphI GGTGA 5 cut(s) 149, 372, 1252, 2296, 2810
Hpy166II GTNNAC 8 cut(s) 6, 260, 287, 916, 2246, 2773, 3207, 3213
Hpy8I GTNNAC 8 cut(s) 6, 260, 287, 916, 2246, 2773, 3207, 3213
HpyCH4III ACNGT 7 cut(s) 1124, 1505, 2299, 2805, 2863, 2956, 3417
HpyCH4IV ACGT 4 cut(s) 445, 681, 723, 3209
HpySE526I ACGT 4 cut(s) 445, 681, 723, 3209
Hsp92I GRCGYC 2 cut(s) 681, 1060
HspAI GCGC 6 cut(s) 496, 1009, 1060, 2067, 2668, 2832
KasI GGCGCC 1 cut(s) 1059
Kpn2I TCCGGA 1 cut(s) 463
KspAI GTTAAC 1 cut(s) 3207
LguI GCTCTTC 1 cut(s) 1863
LmnI GCTCC 5 cut(s) 324, 1136, 1166, 2289, 2986
MaeI CTAG 7 cut(s) 479, 698, 1032, 1626, 3236, 3296, 3405
MaeII ACGT 4 cut(s) 445, 681, 723, 3209
MaeIII GTNAC 9 cut(s) 1118, 1124, 1240, 2219, 2262, 2299, 2784, 2884, 3322
MbiI CCGCTC 1 cut(s) 319
MfeI CAATTG 1 cut(s) 1182
MflI RGATCY 5 cut(s) 112, 234, 1198, 1542, 2095
MhlI GDGCHC 5 cut(s) 177, 283, 2294, 2716, 2983
MlsI TGGCCA 1 cut(s) 2567
MluNI TGGCCA 1 cut(s) 2567
Mly113I GGCGCC 1 cut(s) 1060
MlyI GAGTC 5 cut(s) 671, 1237, 2009, 2519, 3157
MmeI TCCRAC 6 cut(s) 319, 1277, 1916, 1987, 1997, 2832
Mox20I TGGCCA 1 cut(s) 2567
Mph1103I ATGCAT 4 cut(s) 462, 1850, 2753, 3025
MroI TCCGGA 1 cut(s) 463
MroXI GAANNNNTTC 1 cut(s) 2097
MscI TGGCCA 1 cut(s) 2567
MslI CAYNNNNRTG 3 cut(s) 933, 1364, 1843
Msp20I TGGCCA 1 cut(s) 2567
MspA1I CMGCKG 5 cut(s) 392, 1534, 1700, 2036, 2387
MspI CCGG 5 cut(s) 92, 464, 1139, 1586, 2521
MspR9I CCNGG 5 cut(s) 518, 1208, 1587, 2521, 2522
MunI CAATTG 1 cut(s) 1182
Mva1269I GAATGC 3 cut(s) 979, 1485, 1587
MvaI CCWGG 2 cut(s) 518, 1208
MvnI CGCG 4 cut(s) 498, 2067, 2595, 2834
NarI GGCGCC 1 cut(s) 1060
NciI CCSGG 3 cut(s) 1587, 2521, 2522
NcoI CCATGG 2 cut(s) 615, 2269
NdeI CATATG 1 cut(s) 2176
NlaIV GGNNCC 7 cut(s) 96, 236, 453, 1061, 1132, 2089, 2982
NmeAIII GCCGAG 1 cut(s) 2456
NmuCI GTSAC 5 cut(s) 1118, 1124, 1240, 2219, 3322
NsbI TGCGCA 1 cut(s) 1010
NsiI ATGCAT 4 cut(s) 462, 1850, 2753, 3025
NspI RCATGY 3 cut(s) 637, 1625, 1848
NspV TTCGAA 1 cut(s) 3255
PaeI GCATGC 1 cut(s) 1625
PaeR7I CTCGAG 2 cut(s) 107, 1576
PagI TCATGA 1 cut(s) 1072
PciI ACATGT 1 cut(s) 633
PciSI GCTCTTC 1 cut(s) 1863
PctI GAATGC 3 cut(s) 979, 1485, 1587
PdmI GAANNNNTTC 1 cut(s) 2097
PflMI CCANNNNNTGG 2 cut(s) 1236, 2177
PleI GAGTC 5 cut(s) 670, 1237, 2008, 2519, 3157
PluTI GGCGCC 1 cut(s) 1063
PpsI GAGTC 5 cut(s) 670, 1237, 2008, 2519, 3157
PpuMI RGGWCCY 2 cut(s) 1864, 2607
PscI ACATGT 1 cut(s) 633
PshBI ATTAAT 3 cut(s) 1466, 1632, 2114
PsiI TTATAA 3 cut(s) 1610, 2381, 3278
Psp124BI GAGCTC 1 cut(s) 177
Psp5II RGGWCCY 2 cut(s) 1864, 2607
Psp6I CCWGG 2 cut(s) 516, 1206
PspFI CCCAGC 1 cut(s) 3070
PspGI CCWGG 2 cut(s) 516, 1206
PspN4I GGNNCC 7 cut(s) 96, 236, 453, 1061, 1132, 2089, 2982
PspPI GGNCC 8 cut(s) 224, 451, 739, 884, 1373, 1864, 2607, 2773
PspPPI RGGWCCY 2 cut(s) 1864, 2607
PspXI VCTCGAGB 1 cut(s) 107
PstI CTGCAG 1 cut(s) 2281
PstNI CAGNNNCTG 1 cut(s) 905
PsuI RGATCY 5 cut(s) 112, 234, 1198, 1542, 2095
PvuII CAGCTG 3 cut(s) 1534, 1700, 2036
RsaI GTAC 3 cut(s) 1137, 1266, 1406
RsaNI GTAC 3 cut(s) 1136, 1265, 1405
RseI CAYNNNNRTG 3 cut(s) 933, 1364, 1843
SacI GAGCTC 1 cut(s) 177
SapI GCTCTTC 1 cut(s) 1863
Sau96I GGNCC 8 cut(s) 224, 451, 739, 884, 1373, 1864, 2607, 2773
SchI GAGTC 5 cut(s) 671, 1237, 2009, 2519, 3157
ScrFI CCNGG 5 cut(s) 518, 1208, 1587, 2521, 2522
SduI GDGCHC 5 cut(s) 177, 283, 2294, 2716, 2983
SfcI CTRYAG 2 cut(s) 2277, 2295
SfoI GGCGCC 1 cut(s) 1061
Sfr274I CTCGAG 2 cut(s) 107, 1576
SfuI TTCGAA 1 cut(s) 3255
SinI GGWCC 4 cut(s) 224, 1864, 2607, 2773
SlaI CTCGAG 2 cut(s) 107, 1576
SmaI CCCGGG 1 cut(s) 2522
SmiMI CAYNNNNRTG 3 cut(s) 933, 1364, 1843
SmlI CTYRAG 4 cut(s) 107, 1268, 1576, 3194
SmoI CTYRAG 4 cut(s) 107, 1268, 1576, 3194
SphI GCATGC 1 cut(s) 1625
SspDI GGCGCC 1 cut(s) 1059
SspI AATATT 1 cut(s) 1464
SspMI CTAG 7 cut(s) 479, 698, 1032, 1626, 3236, 3296, 3405
SstI GAGCTC 1 cut(s) 177
StyD4I CCNGG 5 cut(s) 516, 1206, 1585, 2519, 2520
StyI CCWWGG 5 cut(s) 615, 1164, 1274, 1453, 2269
TaaI ACNGT 7 cut(s) 1124, 1505, 2299, 2805, 2863, 2956, 3417
TaiI ACGT 4 cut(s) 448, 684, 726, 3212
TaqI TCGA 7 cut(s) 108, 201, 411, 432, 750, 1577, 3255
TaqII GACCGA 1 cut(s) 771
TatI WGTACW 2 cut(s) 1264, 1404
TauI GCSGC 6 cut(s) 14, 91, 319, 1060, 1682, 3363
TscAI CASTG 8 cut(s) 171, 1047, 1129, 1241, 1510, 2286, 2721, 2775
TseFI GTSAC 5 cut(s) 1118, 1124, 1240, 2219, 3322
Tsp45I GTSAC 5 cut(s) 1118, 1124, 1240, 2219, 3322
TspDTI ATGAA 7 cut(s) 464, 751, 1368, 1742, 2361, 2439, 2502
TspGWI ACGGA 1 cut(s) 1123
TspMI CCCGGG 1 cut(s) 2520
TspRI CASTG 8 cut(s) 171, 1047, 1129, 1241, 1510, 2286, 2721, 2775
Van91I CCANNNNNTGG 2 cut(s) 1236, 2177
VpaK11BI GGWCC 4 cut(s) 224, 1864, 2607, 2773
VspI ATTAAT 3 cut(s) 1466, 1632, 2114
XagI CCTNNNNNAGG 1 cut(s) 2675
XapI RAATTY 6 cut(s) 301, 1786, 2492, 2812, 3172, 3269
XbaI TCTAGA 2 cut(s) 3295, 3404
XceI RCATGY 3 cut(s) 637, 1625, 1848
XhoI CTCGAG 2 cut(s) 107, 1576
XmaI CCCGGG 1 cut(s) 2520
XmiI GTMKAC 1 cut(s) 286
XmnI GAANNNNTTC 1 cut(s) 2097
XspI CTAG 7 cut(s) 479, 698, 1032, 1626, 3236, 3296, 3405
ZraI GACGTC 1 cut(s) 682
Zsp2I ATGCAT 4 cut(s) 462, 1850, 2753, 3025
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.