RchiOBHm_Chr7g0188121

HEAT repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0003181
Physical Location & Seq
Forward (+)
7746376 .. 7747113
738 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ16797

Sequence Viewer

Length: 294 bp
ATGTTGGATGGGCCTTCTTCTGTTTTTCTGCTGGTAGCAGAGTTCAAAGAGTCTTCTAAAAGGGGATCTTTTACAGCACTTTCAAGTTCCCTTGGACATATACTAATGCAGCTTCATACAGGTATTTTATACTTGGTTCAACGACAAACTCATAGTAGATTGCTGGCATCCTTGTTCAAGATTCTCATGCTTTTGATATCATCTACACCATATTTATTCTCCAACCGAAGTATTTTTATAGTCAATGTTTTTTTCTTTCTTTTTTCAATGTCACATGTTTGTTTGTTTGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4042 HEAT

Protein Analysis

97

Amino Acids

10.98

Weight (kDa)

9.86

Isoelectric Point (pI)

43.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4042 PF13251 1 - 71 1.4e-17 Domain of unknown function (DUF4042)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 73
AflIII ACRYGT 1 cut(s) 274
AgsI TTSAA 5 cut(s) 46, 84, 140, 178, 267
AluBI AGCT 1 cut(s) 112
AluI AGCT 1 cut(s) 112
AlwI GGATC 1 cut(s) 73
AoxI GGCC 1 cut(s) 11
ApeKI GCWGC 1 cut(s) 109
AspS9I GGNCC 1 cut(s) 11
BbsI GAAGAC 1 cut(s) 45
BbvI GCAGC 1 cut(s) 121
BccI CCATC 1 cut(s) 2
BisI GCNGC 1 cut(s) 110
BlsI GCNGC 1 cut(s) 111
BmgT120I GGNCC 1 cut(s) 11
BmsI GCATC 1 cut(s) 176
BpiI GAAGAC 1 cut(s) 45
BsaJI CCNNGG 1 cut(s) 91
BseDI CCNNGG 1 cut(s) 91
BseGI GGATG 2 cut(s) 13, 167
BseXI GCAGC 1 cut(s) 121
BshFI GGCC 1 cut(s) 13
BsnI GGCC 1 cut(s) 13
Bsp143I GATC 1 cut(s) 65
BspANI GGCC 1 cut(s) 13
BspPI GGATC 1 cut(s) 73
BssECI CCNNGG 1 cut(s) 91
BssMI GATC 1 cut(s) 65
BssT1I CCWWGG 1 cut(s) 91
BstC8I GCNNGC 1 cut(s) 165
BstF5I GGATG 2 cut(s) 13, 167
BstKTI GATC 1 cut(s) 68
BstMBI GATC 1 cut(s) 65
BstNSI RCATGY 1 cut(s) 278
BstV1I GCAGC 1 cut(s) 121
BstV2I GAAGAC 1 cut(s) 45
BstX2I RGATCY 1 cut(s) 65
BstYI RGATCY 1 cut(s) 65
BsuRI GGCC 1 cut(s) 13
BtsCI GGATG 2 cut(s) 13, 167
Cac8I GCNNGC 1 cut(s) 165
Cfr13I GGNCC 1 cut(s) 11
CviAII CATG 2 cut(s) 187, 275
CviJI RGCY 2 cut(s) 13, 112
CviKI_1 RGCY 2 cut(s) 13, 112
DpnI GATC 1 cut(s) 67
DpnII GATC 1 cut(s) 65
Eco130I CCWWGG 1 cut(s) 91
Eco32I GATATC 1 cut(s) 198
EcoRV GATATC 1 cut(s) 198
EcoT14I CCWWGG 1 cut(s) 91
ErhI CCWWGG 1 cut(s) 91
FaeI CATG 2 cut(s) 190, 278
FaiI YATR 9 cut(s) 99, 101, 117, 130, 153, 188, 211, 239, 276
FalI AAGNNNNNCTT 2 cut(s) 52, 84
FatI CATG 2 cut(s) 186, 274
Fnu4HI GCNGC 1 cut(s) 110
FokI GGATG 2 cut(s) 20, 154
Fsp4HI GCNGC 1 cut(s) 110
GluI GCNGC 1 cut(s) 110
HaeIII GGCC 1 cut(s) 13
Hin1II CATG 2 cut(s) 190, 278
HinfI GANTC 2 cut(s) 50, 181
Hpy188III TCNNGA 1 cut(s) 178
HpyAV CCTTC 1 cut(s) 24
HpyCH4V TGCA 1 cut(s) 109
Hsp92II CATG 2 cut(s) 190, 278
Kzo9I GATC 1 cut(s) 65
LpnPI CCDG 3 cut(s) 17, 105, 149
Lsp1109I GCAGC 1 cut(s) 121
LweI GCATC 1 cut(s) 176
MaeIII GTNAC 1 cut(s) 270
MalI GATC 1 cut(s) 67
MboI GATC 1 cut(s) 65
MboII GAAGA 2 cut(s) 9, 45
MflI RGATCY 1 cut(s) 65
MlyI GAGTC 1 cut(s) 59
MmeI TCCRAC 1 cut(s) 246
MseI TTAA 1 cut(s) 292
NdeII GATC 1 cut(s) 65
NlaIII CATG 2 cut(s) 190, 278
NmuCI GTSAC 1 cut(s) 270
NspI RCATGY 1 cut(s) 278
PciI ACATGT 1 cut(s) 274
PfeI GAWTC 1 cut(s) 181
PkrI GCNGC 1 cut(s) 111
PleI GAGTC 1 cut(s) 58
PpsI GAGTC 1 cut(s) 58
PscI ACATGT 1 cut(s) 274
PspPI GGNCC 1 cut(s) 11
PsuI RGATCY 1 cut(s) 65
SaqAI TTAA 1 cut(s) 292
SatI GCNGC 1 cut(s) 110
Sau3AI GATC 1 cut(s) 65
Sau96I GGNCC 1 cut(s) 11
SchI GAGTC 1 cut(s) 59
SetI ASST 2 cut(s) 114, 124
SfaNI GCATC 1 cut(s) 176
StyI CCWWGG 1 cut(s) 91
TfiI GAWTC 1 cut(s) 181
Tru1I TTAA 1 cut(s) 292
Tru9I TTAA 1 cut(s) 292
TseFI GTSAC 1 cut(s) 270
TseI GCWGC 1 cut(s) 109
Tsp45I GTSAC 1 cut(s) 270
TspDTI ATGAA 1 cut(s) 104
XceI RCATGY 1 cut(s) 278
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.