pycom06g11740

HEAT repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0003181
Physical Location & Seq
Forward (+)
16952566 .. 16952817
252 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g11740.1

Sequence Viewer

Length: 252 bp
ATGGCGGCAGCGGCATCACCGTCGTCATCGCCAGTACGGTGGTGGAGGACGGCGTTTCTAACTGTGAGGGACGAAACCCTAACAACTCCTCTGTGCACTCCAATCCCCGAGCTCCTCAACCATTCCATCTTCTCCCACTCCCACACTCTCCTCTCCGCCGCCCACGACCTACCTCCGCAGGAAGTCACCTCCGATTTGCTCTTCATCATGGATCGATCGTCACCACAAAGTCTCACGGCGGCGAAGACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4042 HEAT

Protein Analysis

84

Amino Acids

9.07

Weight (kDa)

6.0

Isoelectric Point (pI)

69.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 6 cut(s) 5, 11, 156, 159, 176, 239
AclWI GGATC 1 cut(s) 219
AfaI GTAC 1 cut(s) 36
AluBI AGCT 1 cut(s) 112
AluI AGCT 1 cut(s) 112
Alw21I GWGCWC 2 cut(s) 98, 114
Alw26I GTCTC 1 cut(s) 236
Alw44I GTGCAC 1 cut(s) 94
AlwI GGATC 1 cut(s) 219
Ama87I CYCGRG 1 cut(s) 107
ApaLI GTGCAC 1 cut(s) 94
ApeKI GCWGC 1 cut(s) 8
AsuHPI GGTGA 3 cut(s) 9, 178, 213
AvaI CYCGRG 1 cut(s) 107
BaeGI GKGCMC 1 cut(s) 98
BanII GRGCYC 1 cut(s) 114
Bbv12I GWGCWC 2 cut(s) 98, 114
BbvI GCAGC 1 cut(s) 20
BccI CCATC 1 cut(s) 134
BceAI ACGGC 1 cut(s) 66
BcgI CGANNNNNNTGC 1 cut(s) 37
BcoDI GTCTC 1 cut(s) 236
BisI GCNGC 5 cut(s) 6, 9, 12, 159, 240
BlsI GCNGC 5 cut(s) 7, 10, 13, 160, 241
BmeT110I CYCGRG 1 cut(s) 107
BmsI GCATC 1 cut(s) 23
Bsa29I ATCGAT 1 cut(s) 214
Bse1I ACTGG 1 cut(s) 32
BseCI ATCGAT 1 cut(s) 214
BseNI ACTGG 1 cut(s) 32
BseRI GAGGAG 3 cut(s) 78, 104, 140
BseSI GKGCMC 1 cut(s) 98
BseXI GCAGC 1 cut(s) 20
Bsh1285I CGRYCG 1 cut(s) 218
BshVI ATCGAT 1 cut(s) 214
BsiEI CGRYCG 1 cut(s) 218
BsiHKAI GWGCWC 2 cut(s) 98, 114
BsiHKCI CYCGRG 1 cut(s) 107
BslFI GGGAC 1 cut(s) 83
BsmAI GTCTC 1 cut(s) 236
BsmFI GGGAC 1 cut(s) 83
BsoBI CYCGRG 1 cut(s) 107
Bsp1286I GDGCHC 2 cut(s) 98, 114
Bsp143I GATC 2 cut(s) 211, 215
BspACI CCGC 6 cut(s) 5, 11, 156, 159, 176, 239
BspDI ATCGAT 1 cut(s) 214
BspPI GGATC 1 cut(s) 219
BspQI GCTCTTC 1 cut(s) 206
BsrI ACTGG 1 cut(s) 32
BssMI GATC 2 cut(s) 211, 215
Bst4CI ACNGT 3 cut(s) 21, 39, 64
Bst6I CTCTTC 1 cut(s) 206
BstKTI GATC 2 cut(s) 214, 218
BstMAI GTCTC 1 cut(s) 236
BstMBI GATC 2 cut(s) 211, 215
BstMCI CGRYCG 1 cut(s) 218
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstSLI GKGCMC 1 cut(s) 98
BstV1I GCAGC 1 cut(s) 20
BstXI CCANNNNNNTGG 1 cut(s) 39
Bsu15I ATCGAT 1 cut(s) 214
BsuTUI ATCGAT 1 cut(s) 214
BtgZI GCGATG 1 cut(s) 12
ClaI ATCGAT 1 cut(s) 214
Csp6I GTAC 1 cut(s) 35
CviAII CATG 1 cut(s) 208
CviJI RGCY 1 cut(s) 112
CviKI_1 RGCY 1 cut(s) 112
CviQI GTAC 1 cut(s) 35
DpnI GATC 2 cut(s) 213, 217
DpnII GATC 2 cut(s) 211, 215
Eam1104I CTCTTC 1 cut(s) 206
EarI CTCTTC 1 cut(s) 206
EciI GGCGGA 1 cut(s) 145
Ecl136II GAGCTC 1 cut(s) 112
Eco24I GRGCYC 1 cut(s) 114
Eco53kI GAGCTC 1 cut(s) 112
Eco88I CYCGRG 1 cut(s) 107
EcoICRI GAGCTC 1 cut(s) 112
EcoT38I GRGCYC 1 cut(s) 114
FaeI CATG 1 cut(s) 211
FaiI YATR 1 cut(s) 209
FaqI GGGAC 1 cut(s) 83
FatI CATG 1 cut(s) 207
Fnu4HI GCNGC 5 cut(s) 6, 9, 12, 159, 240
FriOI GRGCYC 1 cut(s) 114
Fsp4HI GCNGC 5 cut(s) 6, 9, 12, 159, 240
GluI GCNGC 5 cut(s) 6, 9, 12, 159, 240
Hin1II CATG 1 cut(s) 211
HphI GGTGA 3 cut(s) 9, 178, 213
Hpy166II GTNNAC 1 cut(s) 96
Hpy188I TCNGA 1 cut(s) 193
Hpy8I GTNNAC 1 cut(s) 96
Hpy99I CGWCG 1 cut(s) 25
HpyCH4III ACNGT 3 cut(s) 21, 39, 64
HpyCH4V TGCA 1 cut(s) 96
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
Hsp92II CATG 1 cut(s) 211
Kzo9I GATC 2 cut(s) 211, 215
LguI GCTCTTC 1 cut(s) 206
LmnI GCTCC 1 cut(s) 117
LpnPI CCDG 2 cut(s) 45, 164
Lsp1109I GCAGC 1 cut(s) 20
LweI GCATC 1 cut(s) 23
MaeIII GTNAC 2 cut(s) 184, 219
MalI GATC 2 cut(s) 213, 217
MboI GATC 2 cut(s) 211, 215
MboII GAAGA 2 cut(s) 121, 193
MhlI GDGCHC 2 cut(s) 98, 114
MnlI CCTC 7 cut(s) 39, 60, 99, 125, 161, 183, 199
MspA1I CMGCKG 1 cut(s) 11
MwoI GCNNNNNNNGC 1 cut(s) 11
NdeII GATC 2 cut(s) 211, 215
NlaIII CATG 1 cut(s) 211
NmuCI GTSAC 2 cut(s) 184, 219
PciSI GCTCTTC 1 cut(s) 206
PkrI GCNGC 5 cut(s) 7, 10, 13, 160, 241
Ple19I CGATCG 1 cut(s) 218
Psp124BI GAGCTC 1 cut(s) 114
PvuI CGATCG 1 cut(s) 218
RsaI GTAC 1 cut(s) 36
RsaNI GTAC 1 cut(s) 35
SacI GAGCTC 1 cut(s) 114
SapI GCTCTTC 1 cut(s) 206
SatI GCNGC 5 cut(s) 6, 9, 12, 159, 240
Sau3AI GATC 2 cut(s) 211, 215
SduI GDGCHC 2 cut(s) 98, 114
SetI ASST 5 cut(s) 114, 171, 175, 191, 251
SfaNI GCATC 1 cut(s) 23
SgeI CNNG 7 cut(s) 44, 119, 121, 176, 191, 220, 247
SsiI CCGC 6 cut(s) 5, 11, 156, 159, 176, 239
SstI GAGCTC 1 cut(s) 114
TaaI ACNGT 3 cut(s) 21, 39, 64
TaqI TCGA 1 cut(s) 214
TauI GCSGC 4 cut(s) 8, 14, 161, 242
TseFI GTSAC 2 cut(s) 184, 219
TseI GCWGC 1 cut(s) 8
Tsp45I GTSAC 2 cut(s) 184, 219
TspDTI ATGAA 1 cut(s) 193
VneI GTGCAC 1 cut(s) 94
XcmI CCANNNNNNNNNTGG 1 cut(s) 39
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.